Wall clock time and date at job start Tue Mar 31 2020 11:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31200 * 119.31042 * 2 1 4 4 C 1.32915 * 121.84701 * 179.70052 * 3 2 1 5 5 C 1.41112 * 120.20988 * 0.54149 * 4 3 2 6 6 C 1.45984 * 106.42550 * 179.65972 * 5 4 3 7 7 N 1.30202 * 107.58563 * 359.76992 * 6 5 4 8 8 N 1.36624 * 133.26338 * 179.60764 * 4 3 2 9 9 C 1.46501 * 125.33847 * 0.72430 * 8 4 3 10 10 C 1.52996 * 109.46841 * 119.71492 * 9 8 4 11 11 C 1.52994 * 109.47098 * 239.72100 * 9 8 4 12 12 C 1.39597 * 119.45296 * 359.47384 * 5 4 3 13 13 C 1.39601 * 117.94645 * 0.25060 * 12 5 4 14 14 C 1.47562 * 120.41572 * 180.02562 * 13 12 5 15 15 O 1.21488 * 119.99507 * 173.72918 * 14 13 12 16 16 O 1.34722 * 119.99857 * 353.72785 * 14 13 12 17 17 C 1.45202 * 117.00171 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.46830 * 30.00531 * 17 16 14 19 19 C 1.52994 * 109.47485 * 270.00604 * 17 16 14 20 20 C 1.50696 * 109.47141 * 149.99845 * 17 16 14 21 21 H 1.07994 * 120.00517 * 0.02562 * 20 17 16 22 22 C 1.37883 * 119.99746 * 180.02562 * 20 17 16 23 23 N 1.31509 * 120.00119 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99954 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.46841 * 90.00138 * 24 22 20 26 26 H 1.48493 * 109.47060 * 210.00162 * 24 22 20 27 27 H 1.48506 * 109.47149 * 330.00365 * 24 22 20 28 28 H 1.09008 * 109.46851 * 263.36783 * 1 2 3 29 29 H 1.08995 * 109.47741 * 23.36939 * 1 2 3 30 30 H 1.09001 * 109.47364 * 143.37416 * 1 2 3 31 31 H 1.08005 * 126.21255 * 179.76591 * 6 5 4 32 32 H 1.09006 * 109.46445 * 359.72143 * 9 8 4 33 33 H 1.09004 * 109.47136 * 179.97438 * 10 9 8 34 34 H 1.09010 * 109.46741 * 60.00653 * 10 9 8 35 35 H 1.08994 * 109.47622 * 300.00170 * 10 9 8 36 36 H 1.08997 * 109.47418 * 299.99581 * 11 9 8 37 37 H 1.08998 * 109.47442 * 60.00215 * 11 9 8 38 38 H 1.09004 * 109.46855 * 179.97438 * 11 9 8 39 39 H 1.08006 * 121.02499 * 180.27496 * 12 5 4 40 40 H 1.08997 * 109.47275 * 179.97438 * 19 17 16 41 41 H 1.08997 * 109.47272 * 299.99619 * 19 17 16 42 42 H 1.09004 * 109.47296 * 59.99259 * 19 17 16 43 43 H 0.97006 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1493 1.1440 0.0000 4 6 3.4771 1.2029 0.0059 5 6 4.2405 0.0161 0.0009 6 6 5.6415 0.4263 0.0012 7 7 5.6702 1.7280 0.0010 8 7 4.3686 2.2382 0.0005 9 6 4.0158 3.6601 0.0005 10 6 4.5929 4.3286 1.2499 11 6 4.5930 4.3288 -1.2486 12 6 3.5894 -1.2188 0.0009 13 6 2.1934 -1.2224 0.0005 14 6 1.4496 -2.4969 0.0010 15 8 0.2402 -2.4942 0.1156 16 8 2.1118 -3.6633 -0.1256 17 6 1.3158 -4.8776 -0.1163 18 1 0.3285 -4.6680 -0.5281 19 6 1.1723 -5.3824 1.3208 20 6 1.9958 -5.9304 -0.9531 21 1 2.9327 -5.7093 -1.4426 22 6 1.4218 -7.1762 -1.0937 23 7 0.2806 -7.4454 -0.4980 24 14 2.2650 -8.4815 -2.1304 25 1 3.1837 -9.2753 -1.2754 26 1 1.2419 -9.3791 -2.7242 27 1 3.0397 -7.8276 -3.2155 28 1 -0.3633 -0.1187 1.0209 29 1 -0.3634 0.9433 -0.4076 30 1 -0.3634 -0.8247 -0.6131 31 1 6.4987 -0.2306 0.0016 32 1 2.9308 3.7652 0.0005 33 1 4.3309 5.3867 1.2497 34 1 5.6779 4.2235 1.2498 35 1 4.1817 3.8523 2.1398 36 1 5.6779 4.2237 -1.2486 37 1 4.1818 3.8525 -2.1387 38 1 4.3302 5.3866 -1.2488 39 1 4.1486 -2.1429 0.0015 40 1 0.5744 -6.2937 1.3278 41 1 2.1595 -5.5920 1.7326 42 1 0.6805 -4.6209 1.9261 43 1 -0.1234 -8.3217 -0.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778311045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:51 Heat of formation + Delta-G solvation = -8.233351 kcal Electronic energy + Delta-G solvation = -26156.857672 eV Core-core repulsion = 22396.040583 eV Total energy + Delta-G solvation = -3760.817088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.80400 -41.28721 -39.42826 -37.50725 -36.61013 -35.33644 -34.00930 -32.87735 -31.68126 -30.80779 -28.75580 -28.23667 -27.41370 -25.68301 -24.14221 -23.81975 -23.03969 -21.66582 -20.79903 -19.39668 -18.85980 -18.24508 -17.90685 -17.13434 -16.94395 -16.59158 -16.45386 -16.13930 -15.48434 -15.16290 -14.96831 -14.74011 -14.54796 -14.24863 -14.15425 -13.96420 -13.71779 -13.38678 -13.20093 -13.15278 -13.07802 -12.94891 -12.85370 -12.75214 -12.50648 -12.43890 -12.34871 -12.12265 -11.85367 -11.64221 -11.55158 -11.23712 -10.96542 -10.68320 -10.55249 -10.03546 -9.49367 -8.25525 -6.41659 -0.45432 -0.38124 0.97579 1.35117 1.44708 1.46525 1.55785 1.57978 1.93379 2.43080 2.56463 2.91224 3.05667 3.10837 3.40634 3.55082 3.65322 3.88759 3.92736 4.06839 4.15589 4.23423 4.38360 4.58744 4.64988 4.66180 4.70262 4.71940 4.73696 4.77394 4.83905 4.87138 4.89769 5.03908 5.10575 5.15876 5.18021 5.29462 5.40463 5.52891 5.66590 5.74024 5.95190 6.10736 6.29611 6.62917 6.68933 6.96228 7.29708 8.82079 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.002914 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.520835 B = 9605.242382 C =10305.850600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.253 3.747 3 N -0.520 5.520 4 C 0.323 3.677 5 C -0.259 4.259 6 C 0.113 3.887 7 N -0.251 5.251 8 N -0.386 5.386 9 C 0.151 3.849 10 C -0.152 4.152 11 C -0.152 4.152 12 C 0.084 3.916 13 C -0.236 4.236 14 C 0.506 3.494 15 O -0.534 6.534 16 O -0.355 6.355 17 C 0.221 3.779 18 H 0.012 0.988 19 C -0.143 4.143 20 C -0.546 4.546 21 H 0.069 0.931 22 C 0.017 3.983 23 N -0.917 5.917 24 Si 0.981 3.019 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.265 1.265 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.102 0.898 39 H 0.172 0.828 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.024 0.976 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 21.216 1.471 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 N -0.237 5.237 4 C 0.082 3.918 5 C -0.269 4.269 6 C -0.085 4.085 7 N -0.062 5.062 8 N -0.176 5.176 9 C 0.051 3.949 10 C -0.210 4.210 11 C -0.210 4.210 12 C 0.057 3.943 13 C -0.242 4.242 14 C 0.352 3.648 15 O -0.426 6.426 16 O -0.272 6.272 17 C 0.168 3.832 18 H 0.030 0.970 19 C -0.201 4.201 20 C -0.583 4.583 21 H 0.088 0.912 22 C -0.183 4.183 23 N -0.555 5.555 24 Si 0.804 3.196 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.262 0.738 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.190 0.810 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.194 23.123 1.522 25.316 hybrid contribution -0.357 -2.392 -0.301 2.437 sum 9.837 20.732 1.221 22.980 Atomic orbital electron populations 1.21089 0.86251 1.04352 1.04616 1.21435 0.97640 0.84904 0.85697 1.66636 1.06288 1.28509 1.22257 1.19512 0.89255 0.88979 0.94037 1.20690 0.96049 0.93434 1.16738 1.25801 0.95417 0.91728 0.95590 1.76654 0.98519 1.11929 1.19057 1.48845 1.00407 1.05525 1.62807 1.21646 1.01046 0.73781 0.98423 1.22096 1.01943 1.01937 0.95025 1.22092 1.01941 1.01933 0.95036 1.21596 0.91919 0.98102 0.82706 1.19707 0.94666 0.91355 1.18498 1.21074 0.85940 0.85169 0.72642 1.90712 1.16025 1.88143 1.47750 1.86496 1.43186 1.15557 1.81933 1.20361 0.90364 0.77494 0.95007 0.97040 1.21994 1.00768 1.01501 0.95813 1.21297 1.08897 0.96827 1.31305 0.91233 1.25795 0.95478 1.00184 0.96843 1.70016 1.18410 1.23367 1.43667 0.85210 0.78060 0.77750 0.78571 1.19227 1.20550 1.18932 0.89089 0.89079 0.89278 0.73843 0.87743 0.87986 0.91540 0.93422 0.91537 0.93467 0.87975 0.81010 0.90106 0.93503 0.95679 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.10 8.83 71.24 0.63 -2.47 16 2 C 0.25 8.05 6.82 43.13 0.29 8.34 16 3 N -0.52 -15.58 10.25 -180.04 -1.84 -17.43 16 4 C 0.32 9.00 7.91 134.19 1.06 10.06 16 5 C -0.26 -6.65 6.36 -20.24 -0.13 -6.78 16 6 C 0.11 2.15 12.30 86.94 1.07 3.22 16 7 N -0.25 -5.41 12.20 -53.07 -0.65 -6.06 16 8 N -0.39 -8.98 3.31 -324.42 -1.07 -10.06 16 9 C 0.15 2.61 3.66 44.99 0.16 2.78 16 10 C -0.15 -2.07 9.43 71.98 0.68 -1.39 16 11 C -0.15 -2.09 9.43 71.98 0.68 -1.41 16 12 C 0.08 2.39 9.78 22.93 0.22 2.62 16 13 C -0.24 -8.09 5.89 -20.01 -0.12 -8.21 16 14 C 0.51 21.44 7.79 70.28 0.55 21.98 16 15 O -0.53 -24.62 12.58 19.87 0.25 -24.37 16 16 O -0.36 -16.64 9.19 -56.32 -0.52 -17.16 16 17 C 0.22 11.85 2.56 29.84 0.08 11.93 16 18 H 0.01 0.71 7.16 -2.38 -0.02 0.69 16 19 C -0.14 -7.22 9.33 71.98 0.67 -6.55 16 20 C -0.55 -30.22 8.90 25.60 0.23 -30.00 16 21 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 22 C 0.02 0.90 5.30 84.66 0.45 1.35 16 23 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 24 Si 0.98 42.10 29.54 68.60 2.03 44.13 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.09 3.00 5.82 -2.39 -0.01 2.99 16 31 H 0.25 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.10 1.86 8.03 -2.38 -0.02 1.84 16 33 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 39 H 0.17 4.33 7.70 -2.91 -0.02 4.31 16 40 H 0.08 4.39 6.07 -2.39 -0.01 4.38 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -67.87 364.40 5.99 -61.88 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.02 Total: 15.21 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.53 Total: 5.48 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -3.32 Total: -85.18 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.27 Total: -41.53 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.87 5.99 -61.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778311045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.650 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds