Wall clock time and date at job start Tue Mar 31 2020 11:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38275 * 119.92861 * 2 1 4 4 C 1.38111 * 120.07088 * 179.72236 * 3 2 1 5 5 C 1.38872 * 119.92774 * 0.25736 * 4 3 2 6 6 N 1.39926 * 120.07136 * 180.02562 * 5 4 3 7 7 C 1.46764 * 124.35144 * 173.99123 * 6 5 4 8 8 C 1.54660 * 105.38095 * 162.85425 * 7 6 5 9 9 C 1.54622 * 101.68660 * 25.76502 * 8 7 6 10 10 H 1.09005 * 110.59654 * 216.25086 * 9 8 7 11 11 N 1.46503 * 110.48507 * 93.66562 * 9 8 7 12 12 C 1.34775 * 119.99631 * 158.76832 * 11 9 8 13 13 O 1.21589 * 120.00251 * 0.02562 * 12 11 9 14 14 N 1.34781 * 119.99694 * 180.02562 * 12 11 9 15 15 C 1.46500 * 119.99998 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46960 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99568 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00363 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47311 * 59.99619 * 20 18 16 22 22 H 1.48497 * 109.47503 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47000 * 300.00265 * 20 18 16 24 24 C 1.34423 * 124.34693 * 354.28660 * 6 5 4 25 25 O 1.21279 * 124.94516 * 0.43222 * 24 6 5 26 26 C 1.38870 * 119.85847 * 359.97438 * 5 4 3 27 27 C 1.38108 * 119.93273 * 0.02562 * 26 5 4 28 28 H 1.09006 * 109.46726 * 90.00210 * 1 2 3 29 29 H 1.09000 * 109.46892 * 209.99484 * 1 2 3 30 30 H 1.08996 * 109.46924 * 330.00349 * 1 2 3 31 31 H 1.08005 * 119.96575 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.03750 * 180.23321 * 4 3 2 33 33 H 1.09000 * 110.24189 * 281.98304 * 7 6 5 34 34 H 1.09004 * 110.24376 * 43.98088 * 7 6 5 35 35 H 1.09009 * 111.18847 * 267.58805 * 8 7 6 36 36 H 1.09000 * 110.85352 * 143.79625 * 8 7 6 37 37 H 0.96996 * 119.99920 * 338.77046 * 11 9 8 38 38 H 0.96996 * 119.99857 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.47237 * 300.00301 * 15 14 12 40 40 H 1.08995 * 109.47254 * 60.00115 * 15 14 12 41 41 H 0.97000 * 119.99834 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.03574 * 179.97438 * 26 5 4 43 43 H 1.08000 * 119.96773 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0058 5 6 4.2739 0.0000 0.0062 6 7 5.6731 0.0000 0.0126 7 6 6.5007 -1.2054 0.1405 8 6 7.9107 -0.7875 -0.3380 9 6 7.8982 0.7333 -0.0591 10 1 8.4451 1.2699 -0.8344 11 7 8.4697 1.0174 1.2597 12 6 8.9483 2.2466 1.5360 13 8 8.9054 3.1199 0.6911 14 7 9.4745 2.5078 2.7491 15 6 9.9942 3.8441 3.0497 16 6 10.5225 3.8718 4.4609 17 1 10.4754 2.9832 5.0726 18 6 11.0660 5.0318 4.9707 19 7 11.1229 6.1143 4.2259 20 14 11.7215 5.0661 6.7196 21 1 12.8117 4.0675 6.8593 22 1 12.2493 6.4203 7.0240 23 1 10.6250 4.7374 7.6657 24 6 6.4320 1.1045 -0.0919 25 8 6.0037 2.2343 -0.1967 26 6 3.5780 -1.2018 0.0013 27 6 2.1970 -1.1985 -0.0044 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6552 2.1327 0.0004 32 1 4.1163 2.1381 0.0096 33 1 6.5334 -1.5318 1.1799 34 1 6.1088 -2.0009 -0.4934 35 1 8.0414 -0.9880 -1.4015 36 1 8.6829 -1.2854 0.2484 37 1 8.5036 0.3208 1.9338 38 1 9.5091 1.8111 3.4229 39 1 10.7995 4.0854 2.3558 40 1 9.1940 4.5769 2.9465 41 1 11.5049 6.9305 4.5848 42 1 4.1163 -2.1381 0.0012 43 1 1.6552 -2.1328 -0.0078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:16 Heat of formation + Delta-G solvation = -59.551891 kcal Electronic energy + Delta-G solvation = -25746.541116 eV Core-core repulsion = 21983.498689 eV Total energy + Delta-G solvation = -3763.042427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39456 -40.79144 -39.72153 -37.91164 -36.34416 -35.81896 -34.44377 -33.50752 -31.95248 -31.24361 -29.36297 -28.11013 -27.13676 -24.81461 -24.13032 -23.22189 -22.22079 -22.01124 -20.83248 -20.00849 -18.73216 -18.15565 -18.03822 -17.07509 -16.93729 -16.60648 -16.26558 -16.20082 -15.76717 -15.37785 -15.30455 -14.98713 -14.71111 -14.66553 -14.52926 -14.36869 -14.04712 -13.99228 -13.70694 -13.27612 -13.03543 -12.93179 -12.69420 -12.62054 -12.45513 -12.34560 -12.23719 -12.07805 -11.51692 -11.37043 -11.22370 -10.99802 -10.80338 -10.22215 -9.94698 -9.67296 -8.81900 -8.28891 -6.46322 0.18587 0.40787 1.19517 1.42804 1.47748 1.55936 1.67931 1.99393 2.19248 2.39362 2.82470 3.05671 3.20147 3.29953 3.49191 3.74650 3.92742 4.00348 4.07929 4.12600 4.35692 4.45612 4.47278 4.53720 4.67996 4.82648 4.87316 4.89679 4.98909 5.05590 5.06753 5.14171 5.23605 5.23748 5.35041 5.39712 5.46076 5.57357 5.63072 5.68806 5.82554 5.98652 6.10058 6.18879 6.65125 6.91326 7.21476 7.26146 7.66598 8.83483 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002593 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.443390 B =10795.492703 C =11489.657277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.190 4.190 5 C 0.141 3.859 6 N -0.554 5.554 7 C 0.087 3.913 8 C -0.116 4.116 9 C 0.134 3.866 10 H 0.100 0.900 11 N -0.712 5.712 12 C 0.689 3.311 13 O -0.638 6.638 14 N -0.719 5.719 15 C 0.286 3.714 16 C -0.555 4.555 17 H 0.087 0.913 18 C 0.001 3.999 19 N -0.933 5.933 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.286 1.286 23 H -0.263 1.263 24 C 0.485 3.515 25 O -0.547 6.547 26 C -0.143 4.143 27 C -0.091 4.091 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.139 0.861 37 H 0.419 0.581 38 H 0.407 0.593 39 H -0.012 1.012 40 H -0.023 1.023 41 H 0.269 0.731 42 H 0.163 0.837 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 -27.182 -7.688 32.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.119 4.119 3 C -0.125 4.125 4 C -0.211 4.211 5 C 0.047 3.953 6 N -0.278 5.278 7 C -0.033 4.033 8 C -0.154 4.154 9 C 0.024 3.976 10 H 0.118 0.882 11 N -0.372 5.372 12 C 0.388 3.612 13 O -0.519 6.519 14 N -0.373 5.373 15 C 0.163 3.837 16 C -0.593 4.593 17 H 0.105 0.895 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.812 3.188 21 H -0.182 1.182 22 H -0.212 1.212 23 H -0.188 1.188 24 C 0.272 3.728 25 O -0.423 6.423 26 C -0.164 4.164 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.157 0.843 37 H 0.258 0.742 38 H 0.242 0.758 39 H 0.006 0.994 40 H -0.005 1.005 41 H 0.078 0.922 42 H 0.181 0.819 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.169 -25.596 -8.498 31.446 hybrid contribution 0.416 1.001 1.061 1.517 sum -15.753 -24.595 -7.436 30.139 Atomic orbital electron populations 1.20790 0.89118 1.03582 1.03014 1.20268 0.97733 0.92696 1.01217 1.21073 0.92698 0.99082 0.99667 1.21573 0.95838 0.98312 1.05336 1.18046 0.81547 0.95096 1.00623 1.46002 1.03948 1.10033 1.67791 1.22809 0.89411 0.86104 1.04983 1.23102 0.97584 0.88335 1.06367 1.21485 0.88446 1.00910 0.86740 0.88183 1.44591 1.65258 1.11280 1.16033 1.16394 0.78494 0.83261 0.83034 1.90899 1.64662 1.47364 1.48984 1.45245 1.63908 1.15351 1.12805 1.18406 0.91374 0.78385 0.95562 1.21563 1.41315 0.98696 0.97691 0.89513 1.26135 0.95605 0.94532 1.03577 1.70158 1.45209 1.02404 1.39323 0.85145 0.78942 0.77513 0.77209 1.18226 1.21169 1.18757 1.22286 0.91418 0.83987 0.75074 1.90643 1.78871 1.24164 1.48591 1.21105 0.94878 0.95980 1.04388 1.21262 0.93211 0.98524 0.97926 0.90427 0.89762 0.91756 0.85745 0.86951 0.87762 0.85616 0.85679 0.84300 0.74243 0.75767 0.99408 1.00482 0.92237 0.81932 0.82107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.54 16 2 C -0.12 -2.12 5.88 -19.84 -0.12 -2.23 16 3 C -0.11 -2.61 9.69 22.25 0.22 -2.39 16 4 C -0.19 -5.80 9.29 22.39 0.21 -5.59 16 5 C 0.14 3.42 6.60 38.15 0.25 3.67 16 6 N -0.55 -12.48 3.14 -627.35 -1.97 -14.45 16 7 C 0.09 0.79 6.52 86.89 0.57 1.36 16 8 C -0.12 -1.07 6.78 31.71 0.22 -0.86 16 9 C 0.13 3.42 3.22 44.98 0.14 3.56 16 10 H 0.10 3.07 7.66 -2.38 -0.02 3.05 16 11 N -0.71 -20.30 5.13 -457.84 -2.35 -22.65 16 12 C 0.69 30.18 8.55 179.05 1.53 31.71 16 13 O -0.64 -35.67 16.05 -4.00 -0.06 -35.73 16 14 N -0.72 -32.10 5.55 -482.29 -2.68 -34.78 16 15 C 0.29 16.54 5.43 85.63 0.46 17.01 16 16 C -0.55 -30.95 9.28 25.60 0.24 -30.71 16 17 H 0.09 4.30 7.60 -2.91 -0.02 4.28 16 18 C 0.00 0.05 5.46 84.65 0.46 0.52 16 19 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 20 Si 0.99 42.99 29.54 68.60 2.03 45.02 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 C 0.49 15.74 7.55 87.90 0.66 16.41 16 25 O -0.55 -24.72 14.81 -3.03 -0.04 -24.77 16 26 C -0.14 -2.23 9.42 22.39 0.21 -2.02 16 27 C -0.09 -1.29 9.69 22.25 0.22 -1.08 16 28 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 30 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.11 4.40 5.25 -2.91 -0.02 4.39 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.13 0.32 7.23 -2.38 -0.02 0.30 16 35 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.14 0.45 8.03 -2.39 -0.02 0.43 16 37 H 0.42 7.91 8.58 -92.71 -0.80 7.11 16 38 H 0.41 14.50 8.34 -92.71 -0.77 13.72 16 39 H -0.01 -0.78 8.14 -2.38 -0.02 -0.79 16 40 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 41 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.16 1.21 6.74 -2.91 -0.02 1.19 16 43 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -94.28 362.94 0.68 -93.60 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.51 Total: 22.69 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 5.98 Total: 28.80 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -6.71 Total: -129.61 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -0.11 Total: -60.50 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -94.28 0.68 -93.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.045 kcal (2) G-P(sol) polarization free energy of solvation -94.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds