Wall clock time and date at job start Tue Mar 31 2020 11:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38249 * 120.00112 * 2 1 4 4 C 1.38216 * 120.00021 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99664 * 0.25857 * 4 3 2 6 6 C 1.38206 * 120.00108 * 359.48378 * 5 4 3 7 7 C 1.38217 * 119.99790 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00222 * 0.02562 * 7 2 1 9 9 H 1.09008 * 109.56326 * 320.77888 * 8 7 2 10 10 C 1.50436 * 109.56821 * 200.54267 * 8 7 2 11 11 O 1.21277 * 118.49112 * 72.90777 * 10 8 7 12 12 N 1.33382 * 123.02347 * 252.87803 * 10 8 7 13 13 C 1.45655 * 124.58442 * 355.68838 * 12 10 8 14 14 C 1.52980 * 110.77540 * 21.89390 * 13 12 10 15 15 N 1.47051 * 109.56920 * 81.00951 * 8 7 2 16 16 C 1.34776 * 121.35642 * 257.06959 * 15 8 7 17 17 O 1.21591 * 119.99898 * 4.70692 * 16 15 8 18 18 N 1.34771 * 120.00103 * 184.70308 * 16 15 8 19 19 C 1.46500 * 120.00115 * 185.12896 * 18 16 15 20 20 C 1.50699 * 109.47299 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99892 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00133 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99999 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00138 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47232 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47373 * 119.99944 * 24 22 20 27 27 H 1.48498 * 109.47623 * 240.00221 * 24 22 20 28 28 H 1.08997 * 109.47219 * 89.99720 * 1 2 3 29 29 H 1.08998 * 109.46943 * 210.00280 * 1 2 3 30 30 H 1.09002 * 109.46649 * 329.99626 * 1 2 3 31 31 H 1.07994 * 120.00231 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00030 * 179.97438 * 4 3 2 33 33 H 1.08004 * 119.99678 * 179.72368 * 5 4 3 34 34 H 1.08004 * 119.99896 * 180.23291 * 6 5 4 35 35 H 0.96995 * 117.71098 * 175.65805 * 12 10 8 36 36 H 1.09000 * 109.21335 * 142.22999 * 13 12 10 37 37 H 1.09006 * 109.21255 * 261.55522 * 13 12 10 38 38 H 1.08999 * 109.72085 * 72.95358 * 14 13 12 39 39 H 1.09010 * 109.71723 * 193.55868 * 14 13 12 40 40 H 0.97002 * 120.00220 * 5.12765 * 18 16 15 41 41 H 1.09002 * 109.46924 * 299.99467 * 19 18 16 42 42 H 1.09000 * 109.47102 * 60.00007 * 19 18 16 43 43 H 0.97001 * 119.99732 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0065 6 6 3.5806 -1.1970 -0.0011 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0017 9 1 0.5727 -2.4208 0.6475 10 6 2.3420 -3.6025 0.4953 11 8 2.6098 -3.6410 1.6775 12 7 2.8562 -4.5380 -0.3043 13 6 2.5519 -4.6721 -1.7224 14 6 2.0324 -3.3512 -2.2931 15 7 1.0113 -2.8195 -1.3706 16 6 -0.2646 -2.6339 -1.7632 17 8 -1.0641 -2.1165 -1.0073 18 7 -0.6542 -3.0219 -2.9936 19 6 -2.0090 -2.7197 -3.4622 20 6 -2.1895 -3.2581 -4.8581 21 1 -1.3762 -3.7734 -5.3475 22 6 -3.3928 -3.0928 -5.5105 23 7 -4.3833 -2.4656 -4.9144 24 14 -3.6164 -3.7595 -7.2411 25 1 -2.3615 -4.4191 -7.6834 26 1 -4.7247 -4.7478 -7.2515 27 1 -3.9407 -2.6423 -8.1640 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1325 0.0004 32 1 4.1205 2.1325 -0.0010 33 1 5.3517 -0.0002 -0.0114 34 1 4.1206 -2.1324 -0.0019 35 1 3.4767 -5.1734 0.0858 36 1 3.4558 -4.9633 -2.2573 37 1 1.7932 -5.4434 -1.8550 38 1 2.8540 -2.6404 -2.3817 39 1 1.5879 -3.5236 -3.2734 40 1 -0.0377 -3.5012 -3.5690 41 1 -2.7359 -3.1855 -2.7968 42 1 -2.1596 -1.6402 -3.4665 43 1 -5.2298 -2.3490 -5.3736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787360119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:49 Heat of formation + Delta-G solvation = -23.477453 kcal Electronic energy + Delta-G solvation = -27371.578885 eV Core-core repulsion = 23610.100762 eV Total energy + Delta-G solvation = -3761.478122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22234 -39.02067 -38.95360 -36.46169 -34.62107 -34.07704 -32.86222 -32.29410 -31.52283 -29.44162 -27.80905 -26.82334 -25.87072 -24.18933 -22.66140 -22.37026 -21.11772 -20.19964 -18.85023 -18.57289 -17.17710 -16.77532 -16.65547 -16.08602 -15.81221 -15.38248 -15.24448 -14.95147 -14.69495 -14.39351 -14.09848 -13.64562 -13.47214 -13.21383 -13.04260 -12.96992 -12.62649 -12.22835 -12.13385 -12.00875 -11.91884 -11.77433 -11.69054 -11.07478 -10.99499 -10.97094 -10.81242 -10.33465 -10.26609 -9.45367 -9.40830 -9.32222 -8.85538 -8.80033 -8.68853 -8.46240 -7.85028 -6.20461 -4.27299 1.23728 1.40210 2.42303 2.79689 3.08368 3.20488 3.28117 3.30345 3.70550 3.81155 4.20241 4.28012 4.48678 4.63931 4.71031 4.88724 4.93990 4.96466 4.99032 5.04335 5.16225 5.25702 5.39043 5.47827 5.58122 5.63222 5.79539 5.95545 6.03868 6.18042 6.23302 6.42329 6.47235 6.58220 6.60806 6.77688 6.92312 6.99942 7.06682 7.41347 7.44065 7.50634 7.74552 7.95065 7.99008 8.65914 8.79454 9.18647 9.40498 10.89652 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.003837 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.622890 B = 7294.747346 C = 8098.523653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.046 4.046 3 C -0.126 4.126 4 C -0.110 4.110 5 C -0.133 4.133 6 C -0.099 4.099 7 C -0.095 4.095 8 C 0.193 3.807 9 H 0.137 0.863 10 C 0.524 3.476 11 O -0.542 6.542 12 N -0.717 5.717 13 C 0.094 3.906 14 C 0.094 3.906 15 N -0.633 5.633 16 C 0.701 3.299 17 O -0.582 6.582 18 N -0.725 5.725 19 C 0.267 3.733 20 C -0.543 4.543 21 H 0.062 0.938 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.385 0.615 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.306 0.504 5.822 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.047 4.047 3 C -0.144 4.144 4 C -0.128 4.128 5 C -0.151 4.151 6 C -0.118 4.118 7 C -0.097 4.097 8 C 0.085 3.915 9 H 0.155 0.845 10 C 0.309 3.691 11 O -0.418 6.418 12 N -0.369 5.369 13 C -0.031 4.031 14 C -0.030 4.030 15 N -0.374 5.374 16 C 0.402 3.598 17 O -0.460 6.460 18 N -0.379 5.379 19 C 0.146 3.854 20 C -0.581 4.581 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.521 5.521 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.219 0.781 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.377 1.094 6.809 18.695 hybrid contribution 0.462 -0.854 -1.324 1.641 sum 17.839 0.240 5.486 18.665 Atomic orbital electron populations 1.21151 0.89244 1.03057 1.04002 1.19971 0.97169 0.91890 0.95653 1.21063 0.94163 0.97553 1.01595 1.21139 0.94331 0.97895 0.99457 1.20988 0.99582 0.92340 1.02200 1.20958 0.93237 0.98117 0.99450 1.19523 0.93358 0.93469 1.03341 1.19869 0.97222 0.89311 0.85059 0.84527 1.20169 0.80247 0.82540 0.86097 1.90781 1.60354 1.74856 1.15836 1.45356 1.47955 1.33108 1.10505 1.21826 1.01732 0.98735 0.80839 1.21968 0.92590 0.94143 0.94270 1.47545 1.08298 1.70274 1.11245 1.15969 0.80770 0.79628 0.83390 1.90877 1.51604 1.49814 1.53737 1.45873 1.18205 1.59909 1.13894 1.19019 0.75798 0.96647 0.93917 1.21226 0.99042 1.38348 0.99486 0.91982 1.24928 0.95534 0.94962 0.98478 1.69982 1.03673 1.40808 1.37650 0.86377 0.78242 0.78697 0.83659 1.19674 1.20808 1.20808 0.89943 0.89387 0.92579 0.85877 0.86170 0.86242 0.86749 0.76576 0.89229 0.90754 0.90323 0.87827 0.78074 0.95513 0.95716 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.01 36.01 0.29 -1.59 16 2 C -0.05 -0.68 5.88 -104.62 -0.62 -1.29 16 3 C -0.13 -1.58 9.70 -39.59 -0.38 -1.97 16 4 C -0.11 -1.22 10.05 -39.58 -0.40 -1.62 16 5 C -0.13 -1.49 10.05 -39.59 -0.40 -1.88 16 6 C -0.10 -1.25 9.05 -39.59 -0.36 -1.60 16 7 C -0.10 -1.36 5.13 -104.62 -0.54 -1.90 16 8 C 0.19 2.87 2.23 -70.06 -0.16 2.72 16 9 H 0.14 2.33 5.74 -51.92 -0.30 2.03 16 10 C 0.52 7.29 5.21 -11.73 -0.06 7.23 16 11 O -0.54 -9.18 17.80 5.56 0.10 -9.08 16 12 N -0.72 -7.20 5.42 -61.32 -0.33 -7.54 16 13 C 0.09 0.75 7.34 -4.51 -0.03 0.72 16 14 C 0.09 0.98 6.36 -3.49 -0.02 0.96 16 15 N -0.63 -9.26 2.62 -173.37 -0.45 -9.72 16 16 C 0.70 13.30 7.97 -86.92 -0.69 12.60 16 17 O -0.58 -12.85 11.80 5.29 0.06 -12.79 16 18 N -0.73 -14.31 5.45 -66.42 -0.36 -14.68 16 19 C 0.27 6.73 5.43 -5.19 -0.03 6.70 16 20 C -0.54 -14.07 9.28 -34.44 -0.32 -14.39 16 21 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.31 13.29 55.43 0.74 -24.58 16 24 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.08 1.51 7.00 -51.93 -0.36 1.14 16 29 H 0.09 1.53 4.65 -51.93 -0.24 1.29 16 30 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.11 1.34 6.74 -52.48 -0.35 0.98 16 35 H 0.40 3.29 8.80 -40.82 -0.36 2.93 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 39 H 0.10 1.00 5.75 -51.92 -0.30 0.70 16 40 H 0.38 6.43 5.93 -40.82 -0.24 6.18 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -32.77 347.67 -9.33 -42.10 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.48 Total: 9.53 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.81 Total: 6.34 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.41 Total: -56.50 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.16 Total: -21.87 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.77 -9.33 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.620 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds