Wall clock time and date at job start Tue Mar 31 2020 11:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38249 * 120.00112 * 2 1 4 4 C 1.38216 * 120.00021 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99664 * 0.25857 * 4 3 2 6 6 C 1.38206 * 120.00108 * 359.48378 * 5 4 3 7 7 C 1.38217 * 119.99790 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00222 * 0.02562 * 7 2 1 9 9 H 1.09008 * 109.56326 * 320.77888 * 8 7 2 10 10 C 1.50436 * 109.56821 * 200.54267 * 8 7 2 11 11 O 1.21277 * 118.49112 * 72.90777 * 10 8 7 12 12 N 1.33382 * 123.02347 * 252.87803 * 10 8 7 13 13 C 1.45655 * 124.58442 * 355.68838 * 12 10 8 14 14 C 1.52980 * 110.77540 * 21.89390 * 13 12 10 15 15 N 1.47051 * 109.56920 * 81.00951 * 8 7 2 16 16 C 1.34776 * 121.35642 * 257.06959 * 15 8 7 17 17 O 1.21591 * 119.99898 * 4.70692 * 16 15 8 18 18 N 1.34771 * 120.00103 * 184.70308 * 16 15 8 19 19 C 1.46500 * 120.00115 * 185.12896 * 18 16 15 20 20 C 1.50699 * 109.47299 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99892 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00133 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99999 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00138 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47232 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47373 * 119.99944 * 24 22 20 27 27 H 1.48498 * 109.47623 * 240.00221 * 24 22 20 28 28 H 1.08997 * 109.47219 * 89.99720 * 1 2 3 29 29 H 1.08998 * 109.46943 * 210.00280 * 1 2 3 30 30 H 1.09002 * 109.46649 * 329.99626 * 1 2 3 31 31 H 1.07994 * 120.00231 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00030 * 179.97438 * 4 3 2 33 33 H 1.08004 * 119.99678 * 179.72368 * 5 4 3 34 34 H 1.08004 * 119.99896 * 180.23291 * 6 5 4 35 35 H 0.96995 * 117.71098 * 175.65805 * 12 10 8 36 36 H 1.09000 * 109.21335 * 142.22999 * 13 12 10 37 37 H 1.09006 * 109.21255 * 261.55522 * 13 12 10 38 38 H 1.08999 * 109.72085 * 72.95358 * 14 13 12 39 39 H 1.09010 * 109.71723 * 193.55868 * 14 13 12 40 40 H 0.97002 * 120.00220 * 5.12765 * 18 16 15 41 41 H 1.09002 * 109.46924 * 299.99467 * 19 18 16 42 42 H 1.09000 * 109.47102 * 60.00007 * 19 18 16 43 43 H 0.97001 * 119.99732 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0065 6 6 3.5806 -1.1970 -0.0011 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0017 9 1 0.5727 -2.4208 0.6475 10 6 2.3420 -3.6025 0.4953 11 8 2.6098 -3.6410 1.6775 12 7 2.8562 -4.5380 -0.3043 13 6 2.5519 -4.6721 -1.7224 14 6 2.0324 -3.3512 -2.2931 15 7 1.0113 -2.8195 -1.3706 16 6 -0.2646 -2.6339 -1.7632 17 8 -1.0641 -2.1165 -1.0073 18 7 -0.6542 -3.0219 -2.9936 19 6 -2.0090 -2.7197 -3.4622 20 6 -2.1895 -3.2581 -4.8581 21 1 -1.3762 -3.7734 -5.3475 22 6 -3.3928 -3.0928 -5.5105 23 7 -4.3833 -2.4656 -4.9144 24 14 -3.6164 -3.7595 -7.2411 25 1 -2.3615 -4.4191 -7.6834 26 1 -4.7247 -4.7478 -7.2515 27 1 -3.9407 -2.6423 -8.1640 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1325 0.0004 32 1 4.1205 2.1325 -0.0010 33 1 5.3517 -0.0002 -0.0114 34 1 4.1206 -2.1324 -0.0019 35 1 3.4767 -5.1734 0.0858 36 1 3.4558 -4.9633 -2.2573 37 1 1.7932 -5.4434 -1.8550 38 1 2.8540 -2.6404 -2.3817 39 1 1.5879 -3.5236 -3.2734 40 1 -0.0377 -3.5012 -3.5690 41 1 -2.7359 -3.1855 -2.7968 42 1 -2.1596 -1.6402 -3.4665 43 1 -5.2298 -2.3490 -5.3736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787360119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:48 Heat of formation + Delta-G solvation = -47.028382 kcal Electronic energy + Delta-G solvation = -27372.600130 eV Core-core repulsion = 23610.100762 eV Total energy + Delta-G solvation = -3762.499367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36349 -40.44967 -39.95279 -37.62579 -36.27630 -35.31101 -34.50854 -33.59863 -32.70676 -30.39995 -29.47399 -28.13737 -27.16103 -25.15002 -24.57661 -23.33446 -22.13084 -21.67300 -20.20694 -19.70899 -18.33271 -18.26982 -17.67244 -17.49665 -17.03012 -16.67663 -16.63204 -16.20463 -16.03024 -15.65501 -15.26102 -15.05772 -14.62970 -14.54720 -14.19991 -14.11540 -13.98511 -13.77833 -13.55294 -13.23579 -13.18916 -12.90460 -12.80812 -12.74727 -12.72720 -12.16237 -12.08806 -11.94509 -11.47275 -11.40246 -10.98260 -10.77622 -10.25118 -10.03260 -9.83712 -9.58903 -9.48497 -8.25807 -6.41614 0.23820 0.41914 1.31941 1.45407 1.46848 1.56415 1.61494 2.06733 2.21821 2.40049 2.80453 3.10069 3.10355 3.32966 3.61449 3.75278 3.90709 3.98944 4.03057 4.12223 4.21241 4.32080 4.44312 4.60332 4.64694 4.73561 4.80441 4.87994 4.92925 5.02748 5.07954 5.19340 5.31668 5.35117 5.46989 5.51760 5.53789 5.65074 5.70762 5.73300 5.87079 6.00971 6.04055 6.09845 6.70049 6.99576 7.15005 7.28492 7.67795 8.86512 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.003837 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.622890 B = 7294.747346 C = 8098.523653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.074 4.074 3 C -0.132 4.132 4 C -0.105 4.105 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.109 4.109 8 C 0.192 3.808 9 H 0.103 0.897 10 C 0.528 3.472 11 O -0.578 6.578 12 N -0.699 5.699 13 C 0.096 3.904 14 C 0.084 3.916 15 N -0.623 5.623 16 C 0.698 3.302 17 O -0.621 6.621 18 N -0.718 5.718 19 C 0.288 3.712 20 C -0.550 4.550 21 H 0.085 0.915 22 C 0.005 3.995 23 N -0.931 5.931 24 Si 0.982 3.018 25 H -0.250 1.250 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.413 0.587 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.403 0.597 41 H -0.015 1.015 42 H -0.014 1.014 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.186 -0.417 3.929 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.123 4.123 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.111 4.111 8 C 0.085 3.915 9 H 0.120 0.880 10 C 0.313 3.687 11 O -0.457 6.457 12 N -0.351 5.351 13 C -0.029 4.029 14 C -0.038 4.038 15 N -0.362 5.362 16 C 0.400 3.600 17 O -0.502 6.502 18 N -0.374 5.374 19 C 0.165 3.835 20 C -0.588 4.588 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.570 5.570 24 Si 0.806 3.194 25 H -0.173 1.173 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.143 0.857 35 H 0.250 0.750 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.240 0.760 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.359 0.118 4.890 21.912 hybrid contribution -0.678 -0.520 -0.669 1.085 sum 20.681 -0.401 4.221 21.111 Atomic orbital electron populations 1.20884 0.91138 1.02456 1.01625 1.19961 0.96060 0.93335 0.98127 1.21291 0.95329 0.97150 1.01200 1.21529 0.93564 0.99480 0.97757 1.21412 1.01268 0.91550 1.00125 1.21112 0.92253 0.99453 0.99338 1.19534 0.94342 0.92660 1.04571 1.19769 0.96532 0.90890 0.84307 0.87974 1.19876 0.80125 0.82888 0.85851 1.90763 1.61815 1.75883 1.17286 1.45255 1.46859 1.31817 1.11166 1.22055 1.04164 0.97054 0.79583 1.22379 0.91792 0.95754 0.93891 1.47425 1.07408 1.69427 1.11986 1.16082 0.82047 0.79197 0.82705 1.90860 1.53508 1.51128 1.54698 1.45398 1.16682 1.60667 1.14644 1.18396 0.77659 0.93782 0.93628 1.21615 0.99802 1.38027 0.99392 0.89667 1.26013 0.95116 0.95024 1.03278 1.70151 1.04430 1.42483 1.39908 0.85145 0.78860 0.77835 0.77570 1.17325 1.20784 1.20703 0.93290 0.91765 0.91383 0.84654 0.82876 0.82916 0.85660 0.74951 0.84107 0.90461 0.88724 0.86856 0.75982 0.99695 0.99611 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.65 8.01 71.24 0.57 -3.08 16 2 C -0.07 -2.24 5.88 -19.87 -0.12 -2.36 16 3 C -0.13 -3.20 9.70 22.27 0.22 -2.99 16 4 C -0.11 -2.02 10.05 22.27 0.22 -1.80 16 5 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 6 C -0.10 -2.38 9.05 22.27 0.20 -2.18 16 7 C -0.11 -3.14 5.13 -19.87 -0.10 -3.25 16 8 C 0.19 5.95 2.23 43.31 0.10 6.05 16 9 H 0.10 3.86 5.74 -2.38 -0.01 3.85 16 10 C 0.53 14.42 5.21 87.79 0.46 14.88 16 11 O -0.58 -19.63 17.80 -3.02 -0.05 -19.69 16 12 N -0.70 -12.29 5.42 -467.09 -2.53 -14.82 16 13 C 0.10 1.18 7.34 86.53 0.63 1.81 16 14 C 0.08 1.54 6.36 86.18 0.55 2.09 16 15 N -0.62 -18.51 2.62 -820.67 -2.15 -20.67 16 16 C 0.70 27.98 7.97 179.06 1.43 29.41 16 17 O -0.62 -30.03 11.80 -4.00 -0.05 -30.08 16 18 N -0.72 -29.27 5.45 -482.30 -2.63 -31.90 16 19 C 0.29 15.36 5.43 85.63 0.47 15.83 16 20 C -0.55 -28.77 9.28 25.60 0.24 -28.53 16 21 H 0.09 3.96 7.60 -2.91 -0.02 3.94 16 22 C 0.01 0.28 5.46 84.65 0.46 0.75 16 23 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 24 Si 0.98 41.04 29.54 68.60 2.03 43.07 16 25 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.05 1.99 7.00 -2.39 -0.02 1.98 16 29 H 0.06 2.52 4.65 -2.39 -0.01 2.51 16 30 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 31 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.13 2.58 6.74 -2.91 -0.02 2.56 16 35 H 0.41 5.51 8.80 -92.71 -0.82 4.70 16 36 H 0.14 0.47 8.14 -2.39 -0.02 0.46 16 37 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.09 1.51 7.96 -2.39 -0.02 1.49 16 39 H 0.11 1.88 5.75 -2.38 -0.01 1.86 16 40 H 0.40 13.17 5.93 -92.71 -0.55 12.62 16 41 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -77.52 347.67 0.15 -77.37 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.30 Total: 27.15 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 5.55 Total: 24.47 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -7.02 Total: -122.29 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.10 Total: -49.77 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -77.52 0.15 -77.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.345 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds