Wall clock time and date at job start Tue Mar 31 2020 11:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38285 * 119.92739 * 2 1 4 4 C 1.38112 * 120.06923 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92956 * 0.02763 * 4 3 2 6 6 N 1.39927 * 120.06890 * 180.02562 * 5 4 3 7 7 C 1.46016 * 118.53008 * 262.64155 * 6 5 4 8 8 C 1.52987 * 110.03810 * 161.81596 * 7 6 5 9 9 N 1.47195 * 108.72895 * 50.29400 * 8 7 6 10 10 C 1.46899 * 110.99816 * 167.63465 * 9 8 7 11 11 C 1.50706 * 109.47019 * 293.19914 * 10 9 8 12 12 O 1.21291 * 119.99848 * 0.37336 * 11 10 9 13 13 N 1.34771 * 119.99952 * 180.36774 * 11 10 9 14 14 C 1.37096 * 120.00063 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00015 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00459 * 180.02562 * 14 13 11 17 17 N 1.31422 * 119.99575 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00393 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47090 * 60.00067 * 18 16 14 20 20 H 1.48506 * 109.47309 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47432 * 299.99897 * 18 16 14 22 22 C 1.47074 * 110.00927 * 290.82210 * 9 8 7 23 23 C 1.33713 * 118.54326 * 82.61814 * 6 5 4 24 24 O 1.21291 * 118.62197 * 1.71110 * 23 6 5 25 25 C 1.38869 * 119.86004 * 0.26627 * 5 4 3 26 26 C 1.38112 * 119.92628 * 359.43509 * 25 5 4 27 27 H 1.08994 * 109.47602 * 90.00157 * 1 2 3 28 28 H 1.09002 * 109.47063 * 209.99874 * 1 2 3 29 29 H 1.08996 * 109.47428 * 329.99343 * 1 2 3 30 30 H 1.07997 * 119.96747 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.03255 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.37484 * 281.98987 * 7 6 5 33 33 H 1.08999 * 109.37552 * 41.64459 * 7 6 5 34 34 H 1.09004 * 109.59164 * 170.06128 * 8 7 6 35 35 H 1.08997 * 109.59557 * 290.51673 * 8 7 6 36 36 H 1.08998 * 109.47448 * 53.20122 * 10 9 8 37 37 H 1.08995 * 109.47034 * 173.20518 * 10 9 8 38 38 H 0.97001 * 120.00279 * 0.02562 * 13 11 10 39 39 H 0.96994 * 119.99494 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.59212 * 290.45499 * 22 9 8 41 41 H 1.09005 * 109.27068 * 170.71016 * 22 9 8 42 42 H 1.07999 * 120.03421 * 179.70244 * 25 5 4 43 43 H 1.07997 * 119.96342 * 180.29156 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2738 0.0001 0.0005 6 7 5.6731 0.0001 0.0016 7 6 6.3715 -0.1635 -1.2702 8 6 7.8214 0.3058 -1.1363 9 7 8.4176 -0.3334 0.0480 10 6 9.8758 -0.1563 0.0638 11 6 10.4871 -0.9205 -1.0823 12 8 9.7772 -1.5452 -1.8418 13 7 11.8226 -0.9097 -1.2633 14 6 12.3787 -1.6045 -2.3061 15 1 11.7466 -2.1609 -2.9824 16 6 13.7555 -1.5939 -2.4925 17 7 14.5248 -0.9173 -1.6692 18 14 14.5132 -2.5412 -3.9129 19 1 13.9736 -2.0244 -5.1963 20 1 15.9882 -2.3693 -3.8918 21 1 14.1804 -3.9823 -3.7805 22 6 7.8088 0.2082 1.2723 23 6 6.3111 0.1505 1.1670 24 8 5.6531 0.2494 2.1811 25 6 3.5781 -1.2017 -0.0057 26 6 2.1970 -1.1984 0.0000 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6551 2.1327 -0.0004 31 1 4.1162 2.1382 0.0010 32 1 6.3568 -1.2147 -1.5582 33 1 5.8697 0.4268 -2.0369 34 1 8.3817 0.0205 -2.0267 35 1 7.8455 1.3891 -1.0181 36 1 10.1143 0.9025 -0.0372 37 1 10.2771 -0.5309 1.0053 38 1 12.3904 -0.4104 -0.6557 39 1 15.4859 -0.9102 -1.7991 40 1 8.1223 1.2431 1.4095 41 1 8.1344 -0.3833 2.1281 42 1 4.1164 -2.1380 -0.0106 43 1 1.6553 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796079396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:00 Heat of formation + Delta-G solvation = -24.162393 kcal Electronic energy + Delta-G solvation = -25872.718214 eV Core-core repulsion = 22111.210391 eV Total energy + Delta-G solvation = -3761.507823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99728 -39.12884 -38.38786 -36.70954 -35.44094 -33.92142 -32.17973 -31.29312 -31.13636 -29.74633 -28.91461 -26.50643 -25.17468 -24.11382 -23.00812 -22.79067 -21.45026 -19.30088 -18.95172 -17.94614 -17.54102 -16.94762 -16.23170 -15.82390 -15.66573 -15.18736 -14.92183 -14.80269 -14.50624 -14.14826 -14.01640 -13.95510 -13.66593 -13.62195 -13.54156 -13.10937 -12.58921 -12.44673 -12.26734 -12.05314 -11.84583 -11.71592 -11.57176 -11.30642 -11.29146 -11.21213 -10.96873 -10.48080 -10.27017 -9.91325 -9.52917 -9.10394 -8.99947 -8.66370 -8.58403 -8.14333 -8.01025 -6.46891 -3.88056 1.07176 1.24224 2.54125 2.86312 3.16367 3.23105 3.26733 3.52026 3.72541 3.83539 4.16919 4.57743 4.64929 4.66393 4.81752 4.83294 4.90916 5.07987 5.15876 5.19382 5.22771 5.28289 5.31055 5.34341 5.43024 5.49289 5.53232 5.67358 5.68933 5.77464 5.86142 5.98919 6.06986 6.09119 6.17096 6.38175 6.39541 6.43763 6.85769 6.95160 7.03373 7.29840 7.50114 7.99620 8.11770 8.54695 9.11998 9.47553 9.98228 10.70490 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.002419 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.708592 B =11573.142609 C =12104.696480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.114 4.114 4 C -0.104 4.104 5 C 0.136 3.864 6 N -0.564 5.564 7 C 0.124 3.876 8 C 0.035 3.965 9 N -0.507 5.507 10 C 0.043 3.957 11 C 0.442 3.558 12 O -0.579 6.579 13 N -0.561 5.561 14 C -0.300 4.300 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.900 5.900 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.039 3.961 23 C 0.530 3.470 24 O -0.544 6.544 25 C -0.105 4.105 26 C -0.113 4.113 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.393 0.607 39 H 0.273 0.727 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 5.510 3.258 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.123 4.123 5 C 0.046 3.954 6 N -0.295 5.295 7 C 0.003 3.997 8 C -0.093 4.093 9 N -0.233 5.233 10 C -0.088 4.088 11 C 0.227 3.773 12 O -0.463 6.463 13 N -0.197 5.197 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.092 4.092 23 C 0.320 3.680 24 O -0.420 6.420 25 C -0.124 4.124 26 C -0.132 4.132 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.226 0.774 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.133 0.867 42 H 0.144 0.856 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.025 4.651 3.266 21.779 hybrid contribution 1.232 0.705 -0.259 1.443 sum -19.793 5.356 3.006 20.724 Atomic orbital electron populations 1.20785 0.91100 1.02813 1.02306 1.19961 0.96155 0.93143 0.99507 1.20877 0.93437 0.97682 1.01272 1.21249 0.94332 0.97321 0.99445 1.17569 0.82873 0.93182 1.01772 1.45132 1.03738 1.72280 1.08321 1.21649 0.91629 1.02924 0.83525 1.22672 0.94178 0.95648 0.96821 1.62280 1.04114 1.56201 1.00677 1.21922 0.87127 0.99238 1.00556 1.19615 0.83153 0.86651 0.87835 1.90494 1.60641 1.47088 1.48078 1.41855 1.05001 1.45077 1.27767 1.19642 0.90666 1.26672 1.05998 0.87883 1.25278 0.96175 0.97670 0.98778 1.69604 1.05633 1.41446 1.37438 0.85909 0.77554 0.79880 0.80830 1.19898 1.20984 1.19853 1.22355 0.89914 1.00989 0.95902 1.20217 0.90303 0.75125 0.82400 1.90734 1.66942 1.49988 1.34383 1.21337 0.94339 0.97650 0.99059 1.20911 0.93490 0.97712 1.01049 0.91126 0.91503 0.91553 0.85789 0.86080 0.90026 0.90401 0.85900 0.94556 0.92840 0.88750 0.77424 0.91751 0.91016 0.86731 0.85598 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.09 -0.84 5.88 -104.59 -0.62 -1.46 16 3 C -0.11 -1.15 9.69 -39.61 -0.38 -1.54 16 4 C -0.10 -1.24 9.97 -39.39 -0.39 -1.64 16 5 C 0.14 1.81 4.15 -83.69 -0.35 1.46 16 6 N -0.56 -7.89 2.86 -114.29 -0.33 -8.21 16 7 C 0.12 1.62 6.59 -4.31 -0.03 1.59 16 8 C 0.03 0.50 5.19 -3.67 -0.02 0.48 16 9 N -0.51 -7.92 4.47 -237.39 -1.06 -8.98 16 10 C 0.04 0.70 5.42 -4.97 -0.03 0.67 16 11 C 0.44 9.71 7.40 -10.99 -0.08 9.63 16 12 O -0.58 -14.43 14.05 5.55 0.08 -14.36 16 13 N -0.56 -13.48 5.29 -10.96 -0.06 -13.54 16 14 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 15 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 16 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 17 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16 18 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 C 0.04 0.53 5.55 -5.10 -0.03 0.50 16 23 C 0.53 8.18 7.53 -11.68 -0.09 8.09 16 24 O -0.54 -9.92 16.80 5.55 0.09 -9.83 16 25 C -0.10 -1.29 9.97 -39.39 -0.39 -1.69 16 26 C -0.11 -1.17 9.69 -39.61 -0.38 -1.55 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.12 2.09 5.87 -51.93 -0.30 1.79 16 35 H 0.04 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 37 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 38 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 41 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -32.05 362.17 -8.82 -40.88 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.04 Total: 9.70 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -2.67 Total: 6.49 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.72 Total: -53.81 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.17 Total: -24.18 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.05 -8.82 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796079396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.715 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds