Wall clock time and date at job start Tue Mar 31 2020 11:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38285 * 119.92739 * 2 1 4 4 C 1.38112 * 120.06923 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92956 * 0.02763 * 4 3 2 6 6 N 1.39927 * 120.06890 * 180.02562 * 5 4 3 7 7 C 1.46016 * 118.53008 * 262.64155 * 6 5 4 8 8 C 1.52987 * 110.03810 * 161.81596 * 7 6 5 9 9 N 1.47195 * 108.72895 * 50.29400 * 8 7 6 10 10 C 1.46899 * 110.99816 * 167.63465 * 9 8 7 11 11 C 1.50706 * 109.47019 * 293.19914 * 10 9 8 12 12 O 1.21291 * 119.99848 * 0.37336 * 11 10 9 13 13 N 1.34771 * 119.99952 * 180.36774 * 11 10 9 14 14 C 1.37096 * 120.00063 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00015 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00459 * 180.02562 * 14 13 11 17 17 N 1.31422 * 119.99575 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00393 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47090 * 60.00067 * 18 16 14 20 20 H 1.48506 * 109.47309 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47432 * 299.99897 * 18 16 14 22 22 C 1.47074 * 110.00927 * 290.82210 * 9 8 7 23 23 C 1.33713 * 118.54326 * 82.61814 * 6 5 4 24 24 O 1.21291 * 118.62197 * 1.71110 * 23 6 5 25 25 C 1.38869 * 119.86004 * 0.26627 * 5 4 3 26 26 C 1.38112 * 119.92628 * 359.43509 * 25 5 4 27 27 H 1.08994 * 109.47602 * 90.00157 * 1 2 3 28 28 H 1.09002 * 109.47063 * 209.99874 * 1 2 3 29 29 H 1.08996 * 109.47428 * 329.99343 * 1 2 3 30 30 H 1.07997 * 119.96747 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.03255 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.37484 * 281.98987 * 7 6 5 33 33 H 1.08999 * 109.37552 * 41.64459 * 7 6 5 34 34 H 1.09004 * 109.59164 * 170.06128 * 8 7 6 35 35 H 1.08997 * 109.59557 * 290.51673 * 8 7 6 36 36 H 1.08998 * 109.47448 * 53.20122 * 10 9 8 37 37 H 1.08995 * 109.47034 * 173.20518 * 10 9 8 38 38 H 0.97001 * 120.00279 * 0.02562 * 13 11 10 39 39 H 0.96994 * 119.99494 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.59212 * 290.45499 * 22 9 8 41 41 H 1.09005 * 109.27068 * 170.71016 * 22 9 8 42 42 H 1.07999 * 120.03421 * 179.70244 * 25 5 4 43 43 H 1.07997 * 119.96342 * 180.29156 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2738 0.0001 0.0005 6 7 5.6731 0.0001 0.0016 7 6 6.3715 -0.1635 -1.2702 8 6 7.8214 0.3058 -1.1363 9 7 8.4176 -0.3334 0.0480 10 6 9.8758 -0.1563 0.0638 11 6 10.4871 -0.9205 -1.0823 12 8 9.7772 -1.5452 -1.8418 13 7 11.8226 -0.9097 -1.2633 14 6 12.3787 -1.6045 -2.3061 15 1 11.7466 -2.1609 -2.9824 16 6 13.7555 -1.5939 -2.4925 17 7 14.5248 -0.9173 -1.6692 18 14 14.5132 -2.5412 -3.9129 19 1 13.9736 -2.0244 -5.1963 20 1 15.9882 -2.3693 -3.8918 21 1 14.1804 -3.9823 -3.7805 22 6 7.8088 0.2082 1.2723 23 6 6.3111 0.1505 1.1670 24 8 5.6531 0.2494 2.1811 25 6 3.5781 -1.2017 -0.0057 26 6 2.1970 -1.1984 0.0000 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6551 2.1327 -0.0004 31 1 4.1162 2.1382 0.0010 32 1 6.3568 -1.2147 -1.5582 33 1 5.8697 0.4268 -2.0369 34 1 8.3817 0.0205 -2.0267 35 1 7.8455 1.3891 -1.0181 36 1 10.1143 0.9025 -0.0372 37 1 10.2771 -0.5309 1.0053 38 1 12.3904 -0.4104 -0.6557 39 1 15.4859 -0.9102 -1.7991 40 1 8.1223 1.2431 1.4095 41 1 8.1344 -0.3833 2.1281 42 1 4.1164 -2.1380 -0.0106 43 1 1.6553 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796079396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:59 Heat of formation + Delta-G solvation = -45.466729 kcal Electronic energy + Delta-G solvation = -25873.642040 eV Core-core repulsion = 22111.210391 eV Total energy + Delta-G solvation = -3762.431649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08942 -40.36415 -39.72611 -38.06990 -36.55606 -35.80895 -33.31022 -32.95628 -31.96615 -30.85518 -30.17008 -27.61720 -26.58556 -25.43730 -24.17542 -23.71155 -22.35569 -21.01214 -19.99246 -19.85804 -18.65363 -18.23638 -17.41279 -17.22412 -16.62074 -16.46403 -16.25829 -16.09274 -15.85384 -15.53237 -15.44318 -15.02517 -14.69315 -14.55795 -14.43333 -14.35510 -14.08337 -13.50452 -13.43717 -13.14236 -13.02869 -12.88493 -12.83631 -12.61932 -12.45217 -12.40077 -12.28422 -12.11684 -12.05606 -11.42553 -11.13670 -10.28175 -10.06096 -9.97261 -9.94509 -9.50087 -9.43944 -8.43766 -5.91690 0.21596 0.39940 1.37166 1.41482 1.43987 1.54025 1.81265 2.08319 2.27827 2.55939 2.68387 3.23659 3.33660 3.48463 3.75608 3.88324 3.98901 4.01206 4.03520 4.16002 4.27196 4.37696 4.41508 4.43753 4.46056 4.48090 4.56603 4.60083 4.78044 4.81939 4.87788 4.91105 5.07850 5.10267 5.32705 5.43941 5.49502 5.51462 5.62163 5.68335 5.83119 6.03534 6.05632 6.20031 6.63210 6.97757 7.15993 7.60032 8.14881 8.73193 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.002419 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.708592 B =11573.142609 C =12104.696480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.115 4.115 4 C -0.116 4.116 5 C 0.105 3.895 6 N -0.559 5.559 7 C 0.131 3.869 8 C 0.039 3.961 9 N -0.526 5.526 10 C 0.055 3.945 11 C 0.444 3.556 12 O -0.611 6.611 13 N -0.573 5.573 14 C -0.329 4.329 15 H 0.081 0.919 16 C -0.014 4.014 17 N -0.920 5.920 18 Si 0.990 3.010 19 H -0.271 1.271 20 H -0.274 1.274 21 H -0.274 1.274 22 C 0.046 3.954 23 C 0.525 3.475 24 O -0.578 6.578 25 C -0.123 4.123 26 C -0.117 4.117 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.396 0.604 39 H 0.276 0.724 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.707 6.444 3.455 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.135 4.135 5 C 0.016 3.984 6 N -0.288 5.288 7 C 0.009 3.991 8 C -0.089 4.089 9 N -0.253 5.253 10 C -0.075 4.075 11 C 0.231 3.769 12 O -0.497 6.497 13 N -0.211 5.211 14 C -0.458 4.458 15 H 0.099 0.901 16 C -0.214 4.214 17 N -0.561 5.561 18 Si 0.814 3.186 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.084 4.084 23 C 0.315 3.685 24 O -0.458 6.458 25 C -0.143 4.143 26 C -0.135 4.135 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.168 0.832 31 H 0.142 0.858 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.134 0.866 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.358 5.595 3.455 23.305 hybrid contribution 1.489 0.410 -0.322 1.578 sum -20.869 6.005 3.133 21.940 Atomic orbital electron populations 1.20851 0.88634 1.03889 1.03442 1.20376 0.97954 0.92578 0.97762 1.21225 0.92849 0.99105 1.00187 1.21389 0.95325 0.96884 0.99890 1.17831 0.82564 0.94176 1.03816 1.45126 1.04342 1.71217 1.08086 1.21593 0.91234 1.02389 0.83848 1.22567 0.94248 0.96773 0.95350 1.62209 1.03753 1.57479 1.01822 1.21794 0.87376 0.99784 0.98588 1.20610 0.82328 0.85611 0.88368 1.90479 1.61289 1.48324 1.49650 1.41913 1.05907 1.45594 1.27663 1.19601 0.91178 1.27928 1.07119 0.90117 1.26003 0.96132 0.98293 1.00943 1.69666 1.05912 1.42088 1.38473 0.85022 0.77117 0.78412 0.78008 1.19622 1.19823 1.19891 1.22350 0.88541 1.02553 0.94957 1.20534 0.90953 0.74692 0.82284 1.90711 1.67704 1.51925 1.35423 1.21424 0.95465 0.97135 1.00254 1.21204 0.92773 0.99197 1.00328 0.89807 0.90607 0.90377 0.83239 0.85768 0.91577 0.88181 0.88704 0.92427 0.90095 0.86588 0.76976 0.91421 0.88452 0.85917 0.86436 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.23 0.71 -0.42 16 2 C -0.09 -1.49 5.88 -19.84 -0.12 -1.60 16 3 C -0.12 -2.11 9.69 22.25 0.22 -1.89 16 4 C -0.12 -2.66 9.97 22.39 0.22 -2.44 16 5 C 0.11 2.80 4.15 38.15 0.16 2.96 16 6 N -0.56 -15.51 2.86 -634.48 -1.81 -17.32 16 7 C 0.13 3.40 6.59 86.47 0.57 3.96 16 8 C 0.04 1.09 5.19 86.24 0.45 1.54 16 9 N -0.53 -15.86 4.47 -904.97 -4.05 -19.91 16 10 C 0.06 1.72 5.42 85.56 0.46 2.18 16 11 C 0.44 19.56 7.40 87.66 0.65 20.20 16 12 O -0.61 -31.23 14.05 -3.07 -0.04 -31.27 16 13 N -0.57 -27.87 5.29 -306.99 -1.62 -29.49 16 14 C -0.33 -17.93 9.68 84.04 0.81 -17.12 16 15 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 16 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 17 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 18 Si 0.99 41.99 29.55 68.60 2.03 44.02 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.05 1.17 5.55 85.38 0.47 1.65 16 23 C 0.53 15.91 7.53 87.68 0.66 16.57 16 24 O -0.58 -21.01 16.80 -3.07 -0.05 -21.06 16 25 C -0.12 -3.07 9.97 22.39 0.22 -2.85 16 26 C -0.12 -2.28 9.69 22.25 0.22 -2.06 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 29 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.13 8.11 -2.39 -0.02 2.11 16 34 H 0.09 3.27 5.87 -2.38 -0.01 3.26 16 35 H 0.06 1.37 8.07 -2.39 -0.02 1.35 16 36 H 0.08 2.12 8.11 -2.39 -0.02 2.10 16 37 H 0.12 3.15 8.08 -2.39 -0.02 3.13 16 38 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 39 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 40 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 41 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 42 H 0.12 2.98 8.06 -2.91 -0.02 2.95 16 43 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -70.32 362.17 1.20 -69.12 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.30 Total: 33.74 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.18 Total: 20.41 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -7.20 Total: -114.95 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.09 Total: -52.34 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -70.32 1.20 -69.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796079396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.653 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds