Wall clock time and date at job start Tue Mar 31 2020 11:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30666 * 125.63704 * 2 1 4 4 N 1.39908 * 109.54146 * 179.97438 * 3 2 1 5 5 C 1.36312 * 132.13813 * 180.02562 * 4 3 2 6 6 C 1.35766 * 119.15300 * 179.97438 * 5 4 3 7 7 C 1.39947 * 119.35231 * 0.05876 * 6 5 4 8 8 N 1.31514 * 120.09953 * 359.90573 * 7 6 5 9 9 C 1.33354 * 120.85479 * 0.06096 * 8 7 6 10 10 C 1.40718 * 125.64249 * 179.97438 * 2 1 3 11 11 C 1.46398 * 126.55454 * 0.04797 * 10 2 1 12 12 O 1.21641 * 119.99972 * 269.96927 * 11 10 2 13 13 O 1.34891 * 119.99998 * 89.97585 * 11 10 2 14 14 C 1.45199 * 116.99744 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46960 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46992 * 300.00012 * 15 14 13 17 17 C 1.53005 * 109.47230 * 59.99675 * 15 14 13 18 18 C 1.52991 * 109.47153 * 179.97438 * 15 14 13 19 19 C 1.50700 * 109.47341 * 179.97438 * 18 15 14 20 20 H 1.08007 * 119.99903 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00239 * 180.02562 * 19 18 15 22 22 N 1.31513 * 119.99721 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99805 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47286 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46849 * 120.00010 * 23 21 19 26 26 H 1.48503 * 109.46934 * 239.99690 * 23 21 19 27 27 H 1.09000 * 109.46812 * 89.98139 * 1 2 3 28 28 H 1.09000 * 109.47087 * 209.97463 * 1 2 3 29 29 H 1.08999 * 109.47360 * 329.98187 * 1 2 3 30 30 H 1.07997 * 120.42357 * 359.96435 * 5 4 3 31 31 H 1.07996 * 120.32105 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.94998 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46784 * 299.99163 * 14 13 11 34 34 H 1.08997 * 109.47251 * 59.99697 * 14 13 11 35 35 H 1.08997 * 109.47544 * 60.00080 * 16 15 14 36 36 H 1.09001 * 109.47081 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.46959 * 299.99460 * 16 15 14 38 38 H 1.08997 * 109.46768 * 59.99589 * 17 15 14 39 39 H 1.08997 * 109.47260 * 180.02562 * 17 15 14 40 40 H 1.09007 * 109.47003 * 300.00404 * 17 15 14 41 41 H 1.08994 * 109.47643 * 300.00088 * 18 15 14 42 42 H 1.09002 * 109.47243 * 60.00267 * 18 15 14 43 43 H 0.97004 * 119.99311 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0620 0.0000 4 7 3.6126 0.6741 0.0006 5 6 4.7715 1.3917 0.0013 6 6 5.9580 0.7318 0.0023 7 6 5.9647 -0.6676 0.0013 8 7 4.8300 -1.3326 0.0014 9 6 3.6611 -0.6907 0.0011 10 6 2.3270 -1.1436 0.0005 11 6 1.8794 -2.5374 0.0002 12 8 1.6933 -3.1167 1.0534 13 8 1.6736 -3.1794 -1.1682 14 6 1.2297 -4.5598 -1.0925 15 6 1.0507 -5.1162 -2.5065 16 6 0.0059 -4.2847 -3.2533 17 6 2.3844 -5.0495 -3.2534 18 6 0.5836 -6.5709 -2.4268 19 6 0.4067 -7.1188 -3.8195 20 1 0.6078 -6.4921 -4.6759 21 6 -0.0118 -8.4200 -4.0005 22 7 -0.2562 -9.1831 -2.9577 23 14 -0.2303 -9.0992 -5.7269 24 1 0.1074 -8.0473 -6.7191 25 1 0.6679 -10.2664 -5.9169 26 1 -1.6406 -9.5239 -5.9168 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5141 30 1 4.7462 2.4714 0.0009 31 1 6.8876 1.2815 0.0024 32 1 6.9030 -1.2024 0.0017 33 1 1.9739 -5.1521 -0.5602 34 1 0.2794 -4.6072 -0.5608 35 1 0.3391 -3.2485 -3.3101 36 1 -0.1219 -4.6814 -4.2605 37 1 -0.9443 -4.3323 -2.7212 38 1 3.1288 -5.6418 -2.7213 39 1 2.2568 -5.4455 -4.2609 40 1 2.7176 -4.0132 -3.3102 41 1 1.3282 -7.1630 -1.8949 42 1 -0.3665 -6.6188 -1.8946 43 1 -0.5510 -10.0985 -3.0851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798876160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:51 Heat of formation + Delta-G solvation = 17.764677 kcal Electronic energy + Delta-G solvation = -26219.206398 eV Core-core repulsion = 22459.516668 eV Total energy + Delta-G solvation = -3759.689729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.79995 -39.89131 -38.56691 -36.99413 -35.17799 -34.60705 -32.53060 -32.28452 -30.16126 -28.74401 -27.22639 -26.36253 -26.32831 -24.96613 -24.36986 -22.87119 -21.70153 -20.36129 -18.63267 -18.14772 -17.85962 -17.36887 -16.63689 -16.36078 -16.13315 -15.67196 -15.61537 -14.66606 -14.50453 -13.86672 -13.70049 -13.62538 -13.50040 -13.20507 -13.03171 -12.75911 -12.64998 -12.30235 -12.16182 -12.01577 -11.60976 -11.49593 -11.17962 -10.93228 -10.77463 -10.53754 -10.46334 -10.26225 -10.22592 -10.16507 -10.11271 -9.82754 -9.64905 -9.15837 -8.88097 -8.32831 -8.31856 -5.96871 -3.97491 0.03568 0.39834 1.52163 2.01459 2.33138 2.89898 3.19201 3.33258 3.37505 3.41086 3.44613 3.71899 3.91186 4.37079 4.48708 4.50003 4.69488 4.89806 5.04525 5.21622 5.28401 5.34377 5.39026 5.53053 5.56541 5.60495 5.61742 5.89318 5.91634 6.08415 6.17193 6.28576 6.46948 6.60244 6.71511 6.78508 6.89588 6.98931 7.17805 7.18412 7.19226 7.21260 7.66952 7.79174 8.02045 8.09776 8.44984 9.07159 9.65302 11.14893 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.002845 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.447918 B = 9838.524907 C =10310.761078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.168 3.832 3 N -0.310 5.310 4 N -0.305 5.305 5 C 0.170 3.830 6 C -0.226 4.226 7 C 0.190 3.810 8 N -0.460 5.460 9 C 0.306 3.694 10 C -0.258 4.258 11 C 0.555 3.445 12 O -0.502 6.502 13 O -0.341 6.341 14 C 0.078 3.922 15 C -0.058 4.058 16 C -0.125 4.125 17 C -0.125 4.125 18 C 0.035 3.965 19 C -0.507 4.507 20 H 0.061 0.939 21 C 0.055 3.945 22 N -0.896 5.896 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.184 0.816 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 24.227 6.162 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.008 3.992 3 N -0.134 5.134 4 N -0.073 5.073 5 C 0.034 3.966 6 C -0.250 4.250 7 C 0.007 3.993 8 N -0.171 5.171 9 C 0.076 3.924 10 C -0.272 4.272 11 C 0.396 3.604 12 O -0.390 6.390 13 O -0.256 6.256 14 C 0.004 3.996 15 C -0.058 4.058 16 C -0.183 4.183 17 C -0.182 4.182 18 C -0.003 4.003 19 C -0.546 4.546 20 H 0.080 0.920 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.718 3.282 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.201 0.799 31 H 0.190 0.810 32 H 0.203 0.797 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.771 24.179 6.500 27.256 hybrid contribution 0.112 -0.578 -0.743 0.948 sum 10.884 23.601 5.757 26.620 Atomic orbital electron populations 1.20468 0.84485 1.04655 1.04662 1.22414 0.97442 0.87850 0.91536 1.77539 0.82224 1.20968 1.32691 1.46799 1.06815 1.06968 1.46681 1.22160 0.81560 0.99640 0.93258 1.21911 0.98219 0.96344 1.08522 1.23575 0.96554 0.91600 0.87553 1.68197 0.96160 1.37363 1.15396 1.20158 0.93511 0.80647 0.98109 1.18356 0.89132 0.92550 1.27207 1.19483 0.73547 0.84992 0.82357 1.90862 1.47500 1.67514 1.33097 1.86678 1.77216 1.29045 1.32673 1.23529 0.99280 0.76471 1.00277 1.20803 0.96298 0.98478 0.90227 1.21709 0.97605 0.97625 1.01323 1.21703 0.95907 0.99359 1.01241 1.19129 0.96396 0.86956 0.97770 1.21204 1.44444 0.96702 0.92201 0.92044 1.25014 0.95757 0.97190 0.96594 1.69981 1.46623 1.07820 1.29089 0.86571 0.77650 0.79014 0.84988 1.19735 1.21136 1.21134 0.88596 0.89329 0.89477 0.79860 0.81013 0.79724 0.91566 0.91545 0.94245 0.91643 0.93718 0.93744 0.91676 0.94313 0.96309 0.96300 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.26 36.01 0.37 -0.47 16 2 C 0.17 2.25 7.22 -82.15 -0.59 1.66 16 3 N -0.31 -3.96 12.57 33.81 0.43 -3.54 16 4 N -0.30 -3.56 3.86 -11.96 -0.05 -3.60 16 5 C 0.17 1.11 11.29 -16.45 -0.19 0.92 16 6 C -0.23 -1.00 10.05 -39.83 -0.40 -1.40 16 7 C 0.19 1.37 11.28 -17.05 -0.19 1.18 16 8 N -0.46 -5.99 10.47 -11.99 -0.13 -6.12 16 9 C 0.31 4.41 7.90 -155.86 -1.23 3.17 16 10 C -0.26 -4.13 6.04 -104.68 -0.63 -4.76 16 11 C 0.55 10.22 7.43 34.01 0.25 10.47 16 12 O -0.50 -10.38 16.91 -19.38 -0.33 -10.71 16 13 O -0.34 -6.43 8.89 -41.01 -0.36 -6.79 16 14 C 0.08 1.55 4.33 37.16 0.16 1.71 16 15 C -0.06 -1.22 0.61 -154.51 -0.09 -1.32 16 16 C -0.13 -2.46 8.08 37.16 0.30 -2.16 16 17 C -0.12 -2.52 8.08 37.16 0.30 -2.22 16 18 C 0.03 0.88 4.04 -27.89 -0.11 0.77 16 19 C -0.51 -13.89 7.65 -34.44 -0.26 -14.15 16 20 H 0.06 1.63 5.68 -52.48 -0.30 1.33 16 21 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 22 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 23 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.92 7.97 -51.93 -0.41 0.51 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.17 0.00 8.06 -52.49 -0.42 -0.42 16 32 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 36 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.36 6.62 -51.93 -0.34 1.01 16 40 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -36.46 366.40 -7.60 -44.06 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -5.98 Total: -4.15 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.42 Total: -5.14 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.99 Total: -39.34 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.69 Total: -17.50 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.46 -7.60 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.829 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds