Wall clock time and date at job start Tue Mar 31 2020 11:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30666 * 125.63704 * 2 1 4 4 N 1.39908 * 109.54146 * 179.97438 * 3 2 1 5 5 C 1.36312 * 132.13813 * 180.02562 * 4 3 2 6 6 C 1.35766 * 119.15300 * 179.97438 * 5 4 3 7 7 C 1.39947 * 119.35231 * 0.05876 * 6 5 4 8 8 N 1.31514 * 120.09953 * 359.90573 * 7 6 5 9 9 C 1.33354 * 120.85479 * 0.06096 * 8 7 6 10 10 C 1.40718 * 125.64249 * 179.97438 * 2 1 3 11 11 C 1.46398 * 126.55454 * 0.04797 * 10 2 1 12 12 O 1.21641 * 119.99972 * 269.96927 * 11 10 2 13 13 O 1.34891 * 119.99998 * 89.97585 * 11 10 2 14 14 C 1.45199 * 116.99744 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46960 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46992 * 300.00012 * 15 14 13 17 17 C 1.53005 * 109.47230 * 59.99675 * 15 14 13 18 18 C 1.52991 * 109.47153 * 179.97438 * 15 14 13 19 19 C 1.50700 * 109.47341 * 179.97438 * 18 15 14 20 20 H 1.08007 * 119.99903 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00239 * 180.02562 * 19 18 15 22 22 N 1.31513 * 119.99721 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99805 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47286 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46849 * 120.00010 * 23 21 19 26 26 H 1.48503 * 109.46934 * 239.99690 * 23 21 19 27 27 H 1.09000 * 109.46812 * 89.98139 * 1 2 3 28 28 H 1.09000 * 109.47087 * 209.97463 * 1 2 3 29 29 H 1.08999 * 109.47360 * 329.98187 * 1 2 3 30 30 H 1.07997 * 120.42357 * 359.96435 * 5 4 3 31 31 H 1.07996 * 120.32105 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.94998 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46784 * 299.99163 * 14 13 11 34 34 H 1.08997 * 109.47251 * 59.99697 * 14 13 11 35 35 H 1.08997 * 109.47544 * 60.00080 * 16 15 14 36 36 H 1.09001 * 109.47081 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.46959 * 299.99460 * 16 15 14 38 38 H 1.08997 * 109.46768 * 59.99589 * 17 15 14 39 39 H 1.08997 * 109.47260 * 180.02562 * 17 15 14 40 40 H 1.09007 * 109.47003 * 300.00404 * 17 15 14 41 41 H 1.08994 * 109.47643 * 300.00088 * 18 15 14 42 42 H 1.09002 * 109.47243 * 60.00267 * 18 15 14 43 43 H 0.97004 * 119.99311 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0620 0.0000 4 7 3.6126 0.6741 0.0006 5 6 4.7715 1.3917 0.0013 6 6 5.9580 0.7318 0.0023 7 6 5.9647 -0.6676 0.0013 8 7 4.8300 -1.3326 0.0014 9 6 3.6611 -0.6907 0.0011 10 6 2.3270 -1.1436 0.0005 11 6 1.8794 -2.5374 0.0002 12 8 1.6933 -3.1167 1.0534 13 8 1.6736 -3.1794 -1.1682 14 6 1.2297 -4.5598 -1.0925 15 6 1.0507 -5.1162 -2.5065 16 6 0.0059 -4.2847 -3.2533 17 6 2.3844 -5.0495 -3.2534 18 6 0.5836 -6.5709 -2.4268 19 6 0.4067 -7.1188 -3.8195 20 1 0.6078 -6.4921 -4.6759 21 6 -0.0118 -8.4200 -4.0005 22 7 -0.2562 -9.1831 -2.9577 23 14 -0.2303 -9.0992 -5.7269 24 1 0.1074 -8.0473 -6.7191 25 1 0.6679 -10.2664 -5.9169 26 1 -1.6406 -9.5239 -5.9168 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5141 30 1 4.7462 2.4714 0.0009 31 1 6.8876 1.2815 0.0024 32 1 6.9030 -1.2024 0.0017 33 1 1.9739 -5.1521 -0.5602 34 1 0.2794 -4.6072 -0.5608 35 1 0.3391 -3.2485 -3.3101 36 1 -0.1219 -4.6814 -4.2605 37 1 -0.9443 -4.3323 -2.7212 38 1 3.1288 -5.6418 -2.7213 39 1 2.2568 -5.4455 -4.2609 40 1 2.7176 -4.0132 -3.3102 41 1 1.3282 -7.1630 -1.8949 42 1 -0.3665 -6.6188 -1.8946 43 1 -0.5510 -10.0985 -3.0851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798876160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:50 Heat of formation + Delta-G solvation = -4.585162 kcal Electronic energy + Delta-G solvation = -26220.175559 eV Core-core repulsion = 22459.516668 eV Total energy + Delta-G solvation = -3760.658891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.60678 -41.33786 -39.38186 -38.64334 -36.82412 -35.38384 -34.39647 -33.22428 -31.11575 -29.55993 -29.20172 -27.98392 -27.94129 -25.68358 -25.57837 -24.63011 -22.74600 -21.43368 -19.96939 -19.45885 -18.77286 -18.49940 -18.31390 -17.62843 -17.24589 -17.09752 -16.50990 -16.43341 -15.42587 -15.23679 -15.06946 -14.78335 -14.60691 -14.32468 -14.15973 -14.04372 -13.86911 -13.79064 -13.46838 -13.41406 -12.98078 -12.72045 -12.70003 -12.58304 -12.34380 -12.30150 -12.17192 -11.94856 -11.85794 -11.72746 -11.38037 -11.05499 -10.97061 -10.89519 -10.58101 -10.52434 -9.21996 -8.14645 -6.22435 -0.60158 -0.28837 0.78014 0.96387 1.08578 1.42677 1.43314 1.55916 1.81301 2.28837 2.45108 2.66233 2.87221 3.19843 3.49898 3.70722 3.81977 3.90715 3.93413 3.95975 4.05538 4.20807 4.30104 4.51685 4.51718 4.58314 4.61164 4.65686 4.73116 4.74422 4.97269 4.99498 5.06626 5.11065 5.15845 5.34091 5.41059 5.43087 5.44163 5.48547 5.53930 5.73869 5.87747 6.13780 6.28746 6.48297 6.65577 6.91041 7.44978 8.98368 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.002845 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.447918 B = 9838.524907 C =10310.761078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.167 3.833 3 N -0.322 5.322 4 N -0.306 5.306 5 C 0.155 3.845 6 C -0.195 4.195 7 C 0.197 3.803 8 N -0.520 5.520 9 C 0.302 3.698 10 C -0.319 4.319 11 C 0.564 3.436 12 O -0.537 6.537 13 O -0.339 6.339 14 C 0.086 3.914 15 C -0.054 4.054 16 C -0.118 4.118 17 C -0.117 4.117 18 C 0.042 3.958 19 C -0.514 4.514 20 H 0.071 0.929 21 C -0.003 4.003 22 N -0.937 5.937 23 Si 0.961 3.039 24 H -0.258 1.258 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.225 0.775 31 H 0.231 0.769 32 H 0.224 0.776 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.059 0.941 40 H 0.056 0.944 41 H -0.011 1.011 42 H -0.007 1.007 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.582 27.298 4.780 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.007 3.993 3 N -0.146 5.146 4 N -0.074 5.074 5 C 0.021 3.979 6 C -0.217 4.217 7 C 0.018 3.982 8 N -0.234 5.234 9 C 0.069 3.931 10 C -0.334 4.334 11 C 0.407 3.593 12 O -0.427 6.427 13 O -0.254 6.254 14 C 0.012 3.988 15 C -0.054 4.054 16 C -0.175 4.175 17 C -0.174 4.174 18 C 0.004 3.996 19 C -0.552 4.552 20 H 0.089 0.911 21 C -0.200 4.200 22 N -0.578 5.578 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.209 1.209 26 H -0.208 1.208 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.242 0.758 31 H 0.247 0.753 32 H 0.240 0.760 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.008 0.992 42 H 0.011 0.989 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.169 27.307 5.107 30.743 hybrid contribution -0.323 -1.404 -0.239 1.460 sum 12.846 25.903 4.868 29.320 Atomic orbital electron populations 1.20569 0.82971 1.05134 1.05538 1.22736 0.98530 0.87140 0.90932 1.77433 0.82924 1.20600 1.33617 1.47055 1.07600 1.06510 1.46207 1.23250 0.80477 1.01704 0.92504 1.22596 0.99594 0.95149 1.04404 1.24511 0.96201 0.93534 0.83910 1.68254 0.97157 1.39066 1.18907 1.20166 0.93522 0.81936 0.97499 1.18311 0.91040 0.91333 1.32728 1.19961 0.72097 0.85834 0.81394 1.90820 1.49139 1.68676 1.34019 1.86673 1.77288 1.28009 1.33471 1.23216 0.98797 0.77454 0.99285 1.20636 0.97404 0.96019 0.91367 1.21626 0.97069 0.98406 1.00384 1.21612 0.95023 1.00323 1.00418 1.18972 0.94286 0.89645 0.96648 1.21552 1.43648 0.96983 0.92993 0.91057 1.25940 0.95539 0.97705 1.00835 1.70127 1.47854 1.08246 1.31609 0.85451 0.77538 0.78419 0.79980 1.18210 1.20871 1.20788 0.87422 0.90466 0.87296 0.75802 0.75297 0.75957 0.92840 0.91919 0.92062 0.92350 0.93758 0.94366 0.92228 0.92503 0.99244 0.98886 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.26 71.24 0.73 -0.96 16 2 C 0.17 4.55 7.22 43.34 0.31 4.86 16 3 N -0.32 -7.98 12.57 -46.93 -0.59 -8.57 16 4 N -0.31 -6.67 3.86 -191.76 -0.74 -7.41 16 5 C 0.15 1.40 11.29 83.42 0.94 2.34 16 6 C -0.20 -0.71 10.05 22.11 0.22 -0.49 16 7 C 0.20 2.17 11.28 85.15 0.96 3.13 16 8 N -0.52 -13.12 10.47 -191.86 -2.01 -15.12 16 9 C 0.30 8.65 7.90 134.02 1.06 9.71 16 10 C -0.32 -10.59 6.04 -19.90 -0.12 -10.71 16 11 C 0.56 21.86 7.43 69.95 0.52 22.38 16 12 O -0.54 -23.67 16.91 19.37 0.33 -23.34 16 13 O -0.34 -13.24 8.89 -58.05 -0.52 -13.76 16 14 C 0.09 3.60 4.33 71.98 0.31 3.91 16 15 C -0.05 -2.35 0.61 -52.18 -0.03 -2.38 16 16 C -0.12 -4.61 8.08 71.98 0.58 -4.03 16 17 C -0.12 -4.72 8.08 71.98 0.58 -4.14 16 18 C 0.04 2.22 4.04 29.85 0.12 2.34 16 19 C -0.51 -28.55 7.65 25.60 0.20 -28.35 16 20 H 0.07 3.76 5.68 -2.91 -0.02 3.74 16 21 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 22 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 23 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 27 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 28 H 0.08 1.71 7.97 -2.39 -0.02 1.69 16 29 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.23 0.03 8.06 -2.91 -0.02 0.00 16 31 H 0.23 -1.79 8.06 -2.91 -0.02 -1.81 16 32 H 0.22 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.06 2.12 7.68 -2.39 -0.02 2.10 16 36 H 0.06 2.35 6.62 -2.39 -0.02 2.34 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 2.45 6.62 -2.39 -0.02 2.44 16 40 H 0.06 2.08 7.68 -2.38 -0.02 2.06 16 41 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -84.82 366.40 6.65 -78.17 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.02 Total: 3.04 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.85 Total: -2.09 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -3.05 Total: -88.49 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.19 Total: -37.10 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -84.82 6.65 -78.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.585 kcal (2) G-P(sol) polarization free energy of solvation -84.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds