Wall clock time and date at job start Tue Mar 31 2020 11:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38360 * 119.85023 * 2 1 4 4 C 1.37956 * 120.14950 * 179.97438 * 3 2 1 5 5 C 1.39607 * 119.84962 * 0.02562 * 4 3 2 6 6 C 1.47639 * 120.15037 * 180.02562 * 5 4 3 7 7 N 1.29086 * 125.86814 * 359.97438 * 6 5 4 8 8 O 1.41389 * 112.87539 * 179.68176 * 7 6 5 9 9 C 1.44208 * 107.59697 * 17.49721 * 8 7 6 10 10 H 1.09003 * 111.00636 * 92.72490 * 9 8 7 11 11 C 1.52994 * 110.97309 * 216.47973 * 9 8 7 12 12 N 1.46499 * 109.47545 * 292.35938 * 11 9 8 13 13 C 1.34775 * 120.00295 * 179.97438 * 12 11 9 14 14 O 1.21581 * 120.00013 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00111 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.46944 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00040 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99850 * 21 19 17 25 25 C 1.51693 * 125.86852 * 179.97438 * 6 5 4 26 26 C 1.39611 * 119.70329 * 0.27045 * 5 4 3 27 27 C 1.37966 * 119.84521 * 359.42738 * 26 5 4 28 28 H 1.08997 * 109.47340 * 89.99812 * 1 2 3 29 29 H 1.08994 * 109.47516 * 210.00305 * 1 2 3 30 30 H 1.09006 * 109.47448 * 330.00170 * 1 2 3 31 31 H 1.07998 * 119.92324 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.07205 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.47285 * 172.35764 * 11 9 8 34 34 H 1.09005 * 109.47231 * 52.35941 * 11 9 8 35 35 H 0.97004 * 119.99284 * 0.02562 * 12 11 9 36 36 H 0.97004 * 119.99467 * 359.97438 * 15 13 12 37 37 H 1.09000 * 109.46609 * 59.99870 * 16 15 13 38 38 H 1.08999 * 109.46486 * 299.99949 * 16 15 13 39 39 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 40 40 H 1.09000 * 110.79322 * 46.34172 * 25 6 5 41 41 H 1.09003 * 110.95708 * 282.94778 * 25 6 5 42 42 H 1.07997 * 120.08237 * 179.72707 * 26 5 4 43 43 H 1.07998 * 119.92299 * 180.29426 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5751 1.2072 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7527 0.0000 0.0017 7 7 6.5090 1.0460 0.0023 8 8 7.8867 0.7281 0.0106 9 6 8.0189 -0.6487 -0.3976 10 1 8.1766 -0.7239 -1.4735 11 6 9.1482 -1.3408 0.3682 12 7 10.4346 -0.7671 -0.0346 13 6 11.5777 -1.2246 0.5136 14 8 11.5414 -2.1136 1.3421 15 7 12.7611 -0.6964 0.1434 16 6 14.0037 -1.1940 0.7388 17 6 15.1746 -0.4435 0.1584 18 1 15.0097 0.3268 -0.5804 19 6 16.4565 -0.7410 0.5699 20 7 16.6577 -1.6834 1.4649 21 14 17.9079 0.1888 -0.1500 22 1 17.4176 1.1859 -1.1352 23 1 18.6385 0.8860 0.9389 24 1 18.8215 -0.7667 -0.8263 25 6 6.6415 -1.2293 0.0024 26 6 3.5751 -1.2072 -0.0057 27 6 2.1955 -1.2000 0.0001 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6519 2.1332 0.0004 32 1 4.1114 2.1447 0.0010 33 1 9.1395 -2.4073 0.1430 34 1 9.0043 -1.1943 1.4387 35 1 10.4635 -0.0575 -0.6953 36 1 12.7901 0.0127 -0.5179 37 1 14.1103 -2.2569 0.5220 38 1 13.9747 -1.0444 1.8181 39 1 15.9041 -2.1665 1.8385 40 1 6.2987 -1.9550 -0.7351 41 1 6.6843 -1.6789 0.9944 42 1 4.1114 -2.1446 -0.0102 43 1 1.6519 -2.1332 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800716380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:35 Heat of formation + Delta-G solvation = 0.779988 kcal Electronic energy + Delta-G solvation = -24416.373940 eV Core-core repulsion = 20655.947699 eV Total energy + Delta-G solvation = -3760.426241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76304 -39.61195 -39.09532 -35.21324 -34.45894 -34.08159 -32.45527 -32.02652 -31.71326 -31.02333 -27.56665 -27.24986 -25.66153 -23.22553 -22.82938 -22.55903 -21.86878 -20.39713 -20.16997 -18.19836 -17.56282 -17.09649 -16.43405 -16.04887 -15.84683 -15.46260 -15.23793 -15.02084 -14.48746 -14.34010 -13.99418 -13.90244 -13.72302 -13.61716 -13.45983 -13.26278 -12.88848 -12.78153 -12.69994 -12.27190 -12.05590 -11.99202 -11.80205 -11.76155 -11.60360 -10.96984 -10.95535 -10.74035 -10.16677 -10.14553 -9.58943 -9.49225 -8.88544 -8.83481 -8.75714 -8.61592 -7.87214 -6.48335 -4.21117 0.22808 0.88169 1.79939 2.65563 3.15057 3.28701 3.40437 3.44859 3.57215 3.62733 3.83421 3.97950 4.17773 4.31400 4.35770 4.41544 4.46720 4.47617 4.67541 4.80850 4.85042 4.97199 5.05772 5.06955 5.12326 5.15911 5.22762 5.30818 5.31900 5.50414 5.54196 5.59806 5.72873 5.89272 5.92767 6.04439 6.39282 6.70703 6.90934 7.02904 7.29352 7.36339 7.48874 7.88306 8.33424 8.65862 8.83632 9.25735 9.53205 10.92169 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.049017 B = 0.001712 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.093094 B =16350.112465 C =16759.215723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.124 4.124 4 C -0.075 4.075 5 C -0.047 4.047 6 C 0.122 3.878 7 N -0.284 5.284 8 O -0.183 6.183 9 C 0.032 3.968 10 H 0.096 0.904 11 C 0.151 3.849 12 N -0.754 5.754 13 C 0.695 3.305 14 O -0.604 6.604 15 N -0.723 5.723 16 C 0.257 3.743 17 C -0.622 4.622 18 H 0.058 0.942 19 C 0.022 3.978 20 N -0.904 5.904 21 Si 1.082 2.918 22 H -0.289 1.289 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.142 4.142 26 C -0.081 4.081 27 C -0.124 4.124 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.396 0.604 36 H 0.390 0.610 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.273 0.727 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.731 2.433 -6.471 35.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.095 4.095 5 C -0.049 4.049 6 C -0.067 4.067 7 N -0.023 5.023 8 O -0.204 6.204 9 C -0.027 4.027 10 H 0.114 0.886 11 C 0.025 3.975 12 N -0.412 5.412 13 C 0.395 3.605 14 O -0.483 6.483 15 N -0.375 5.375 16 C 0.135 3.865 17 C -0.660 4.660 18 H 0.076 0.924 19 C -0.184 4.184 20 N -0.539 5.539 21 Si 0.910 3.090 22 H -0.215 1.215 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.181 4.181 26 C -0.102 4.102 27 C -0.142 4.142 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.230 0.770 36 H 0.222 0.778 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -32.764 2.948 -5.571 33.364 hybrid contribution -1.556 -0.398 -0.716 1.758 sum -34.319 2.549 -6.287 34.983 Atomic orbital electron populations 1.20866 0.90822 1.03194 1.02698 1.20153 0.96459 0.93148 0.97078 1.21030 0.93752 0.97969 1.01461 1.21365 0.94199 0.97611 0.96287 1.17781 0.87164 0.94407 1.05502 1.24243 0.94135 0.92835 0.95527 1.78427 0.89384 1.22134 1.12334 1.91335 1.14939 1.26786 1.87325 1.23979 0.95014 0.83270 1.00435 0.88588 1.21112 0.80337 0.96995 0.99088 1.44979 1.04754 1.43290 1.48139 1.16099 0.80557 0.82285 0.81577 1.90862 1.86496 1.33883 1.37090 1.45503 1.05409 1.40795 1.45779 1.19056 0.79224 0.94748 0.93481 1.22131 0.92557 1.23410 1.27920 0.92403 1.25877 1.00294 0.96858 0.95327 1.70689 1.35688 1.21209 1.26309 0.83362 0.74648 0.75309 0.75692 1.21454 1.21155 1.21177 1.22968 0.91246 0.98210 1.05718 1.21240 0.94304 0.96938 0.97670 1.20985 0.93691 0.97932 1.01588 0.90740 0.91197 0.91218 0.85333 0.84885 0.89944 0.90847 0.77032 0.77781 0.96713 0.96704 0.91610 0.87390 0.87123 0.85094 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.39 10.00 36.00 0.36 -0.03 16 2 C -0.07 -0.37 5.89 -104.54 -0.62 -0.99 16 3 C -0.12 -0.78 9.68 -39.64 -0.38 -1.16 16 4 C -0.07 -0.59 9.69 -39.17 -0.38 -0.97 16 5 C -0.05 -0.39 5.87 -105.04 -0.62 -1.00 16 6 C 0.12 1.18 7.16 -79.42 -0.57 0.61 16 7 N -0.28 -3.57 12.12 35.30 0.43 -3.14 16 8 O -0.18 -2.50 12.23 -11.37 -0.14 -2.64 16 9 C 0.03 0.33 3.84 -25.82 -0.10 0.23 16 10 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 11 C 0.15 1.95 5.36 -4.05 -0.02 1.93 16 12 N -0.75 -11.86 5.56 -65.23 -0.36 -12.23 16 13 C 0.70 14.85 8.57 -86.92 -0.74 14.10 16 14 O -0.60 -15.28 16.34 5.29 0.09 -15.19 16 15 N -0.72 -16.18 5.55 -66.42 -0.37 -16.55 16 16 C 0.26 7.03 4.74 -5.20 -0.02 7.00 16 17 C -0.62 -17.55 9.28 -34.44 -0.32 -17.87 16 18 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 20 N -0.90 -27.84 13.65 55.43 0.76 -27.08 16 21 Si 1.08 24.99 29.90 -169.99 -5.08 19.90 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 25 C -0.14 -1.10 5.83 -26.48 -0.15 -1.25 16 26 C -0.08 -0.50 9.61 -39.17 -0.38 -0.88 16 27 C -0.12 -0.67 9.68 -39.64 -0.38 -1.05 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.18 8.08 -51.93 -0.42 -0.24 16 30 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.13 1.08 7.84 -52.49 -0.41 0.67 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 5.32 8.49 -40.82 -0.35 4.97 16 36 H 0.39 7.62 8.34 -40.82 -0.34 7.28 16 37 H 0.01 0.44 8.00 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 39 H 0.27 8.54 7.22 -40.82 -0.29 8.24 16 40 H 0.11 0.54 7.95 -51.93 -0.41 0.13 16 41 H 0.11 0.77 7.91 -51.93 -0.41 0.36 16 42 H 0.13 0.53 7.36 -52.49 -0.39 0.15 16 43 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -36.48 370.89 -9.52 -46.00 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.00 Total: 6.12 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -4.42 Total: -0.79 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.45 Total: -58.99 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.05 Total: -17.83 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.48 -9.52 -46.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800716380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.778 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds