Wall clock time and date at job start Tue Mar 31 2020 11:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38360 * 119.85023 * 2 1 4 4 C 1.37956 * 120.14950 * 179.97438 * 3 2 1 5 5 C 1.39607 * 119.84962 * 0.02562 * 4 3 2 6 6 C 1.47639 * 120.15037 * 180.02562 * 5 4 3 7 7 N 1.29086 * 125.86814 * 359.97438 * 6 5 4 8 8 O 1.41389 * 112.87539 * 179.68176 * 7 6 5 9 9 C 1.44208 * 107.59697 * 17.49721 * 8 7 6 10 10 H 1.09003 * 111.00636 * 92.72490 * 9 8 7 11 11 C 1.52994 * 110.97309 * 216.47973 * 9 8 7 12 12 N 1.46499 * 109.47545 * 292.35938 * 11 9 8 13 13 C 1.34775 * 120.00295 * 179.97438 * 12 11 9 14 14 O 1.21581 * 120.00013 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00111 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.46944 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00040 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99850 * 21 19 17 25 25 C 1.51693 * 125.86852 * 179.97438 * 6 5 4 26 26 C 1.39611 * 119.70329 * 0.27045 * 5 4 3 27 27 C 1.37966 * 119.84521 * 359.42738 * 26 5 4 28 28 H 1.08997 * 109.47340 * 89.99812 * 1 2 3 29 29 H 1.08994 * 109.47516 * 210.00305 * 1 2 3 30 30 H 1.09006 * 109.47448 * 330.00170 * 1 2 3 31 31 H 1.07998 * 119.92324 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.07205 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.47285 * 172.35764 * 11 9 8 34 34 H 1.09005 * 109.47231 * 52.35941 * 11 9 8 35 35 H 0.97004 * 119.99284 * 0.02562 * 12 11 9 36 36 H 0.97004 * 119.99467 * 359.97438 * 15 13 12 37 37 H 1.09000 * 109.46609 * 59.99870 * 16 15 13 38 38 H 1.08999 * 109.46486 * 299.99949 * 16 15 13 39 39 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 40 40 H 1.09000 * 110.79322 * 46.34172 * 25 6 5 41 41 H 1.09003 * 110.95708 * 282.94778 * 25 6 5 42 42 H 1.07997 * 120.08237 * 179.72707 * 26 5 4 43 43 H 1.07998 * 119.92299 * 180.29426 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5751 1.2072 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7527 0.0000 0.0017 7 7 6.5090 1.0460 0.0023 8 8 7.8867 0.7281 0.0106 9 6 8.0189 -0.6487 -0.3976 10 1 8.1766 -0.7239 -1.4735 11 6 9.1482 -1.3408 0.3682 12 7 10.4346 -0.7671 -0.0346 13 6 11.5777 -1.2246 0.5136 14 8 11.5414 -2.1136 1.3421 15 7 12.7611 -0.6964 0.1434 16 6 14.0037 -1.1940 0.7388 17 6 15.1746 -0.4435 0.1584 18 1 15.0097 0.3268 -0.5804 19 6 16.4565 -0.7410 0.5699 20 7 16.6577 -1.6834 1.4649 21 14 17.9079 0.1888 -0.1500 22 1 17.4176 1.1859 -1.1352 23 1 18.6385 0.8860 0.9389 24 1 18.8215 -0.7667 -0.8263 25 6 6.6415 -1.2293 0.0024 26 6 3.5751 -1.2072 -0.0057 27 6 2.1955 -1.2000 0.0001 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6519 2.1332 0.0004 32 1 4.1114 2.1447 0.0010 33 1 9.1395 -2.4073 0.1430 34 1 9.0043 -1.1943 1.4387 35 1 10.4635 -0.0575 -0.6953 36 1 12.7901 0.0127 -0.5179 37 1 14.1103 -2.2569 0.5220 38 1 13.9747 -1.0444 1.8181 39 1 15.9041 -2.1665 1.8385 40 1 6.2987 -1.9550 -0.7351 41 1 6.6843 -1.6789 0.9944 42 1 4.1114 -2.1446 -0.0102 43 1 1.6519 -2.1332 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800716380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:34 Heat of formation + Delta-G solvation = -25.212004 kcal Electronic energy + Delta-G solvation = -24417.501037 eV Core-core repulsion = 20655.947699 eV Total energy + Delta-G solvation = -3761.553338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58016 -40.87539 -40.01213 -36.72263 -36.03346 -35.07618 -34.46833 -32.60971 -32.46029 -31.82591 -29.00779 -27.99277 -27.05424 -24.78351 -23.69965 -23.31967 -22.70644 -21.99727 -20.91264 -19.98873 -18.77963 -18.29806 -17.69677 -16.98505 -16.73555 -16.44308 -16.24948 -16.01166 -15.68455 -15.43257 -15.27407 -15.03652 -14.65774 -14.61012 -14.42198 -14.32398 -14.21414 -14.02699 -13.57860 -13.31692 -13.11048 -13.07356 -12.86022 -12.60342 -12.57535 -12.28424 -12.09153 -11.87300 -11.63468 -11.46340 -10.92738 -10.86284 -10.79035 -10.42830 -9.95264 -9.75956 -9.40627 -8.80353 -6.55187 -0.34401 0.42468 1.18038 1.55309 1.65801 1.66912 1.82160 1.91077 2.09427 2.54663 2.79920 2.88004 3.08263 3.26954 3.29360 3.55520 3.61853 3.84835 3.93776 3.97026 4.04439 4.33627 4.40049 4.44128 4.46411 4.50703 4.65423 4.75232 4.77885 4.82174 4.87161 4.90423 4.97355 5.10507 5.26522 5.33160 5.41056 5.41569 5.44493 5.48362 5.62823 5.96232 6.00146 6.12273 6.27537 6.35671 7.09586 7.29270 7.55795 8.59445 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.049017 B = 0.001712 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.093094 B =16350.112465 C =16759.215723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.134 4.134 4 C -0.091 4.091 5 C -0.073 4.073 6 C 0.139 3.861 7 N -0.327 5.327 8 O -0.219 6.219 9 C 0.036 3.964 10 H 0.113 0.887 11 C 0.149 3.851 12 N -0.732 5.732 13 C 0.694 3.306 14 O -0.646 6.646 15 N -0.720 5.720 16 C 0.271 3.729 17 C -0.630 4.630 18 H 0.074 0.926 19 C -0.032 4.032 20 N -0.930 5.930 21 Si 1.136 2.864 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.136 4.136 26 C -0.076 4.076 27 C -0.128 4.128 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.405 0.595 37 H -0.015 1.015 38 H -0.019 1.019 39 H 0.255 0.745 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.155 0.845 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.799 2.390 -8.204 37.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.067 4.067 3 C -0.151 4.151 4 C -0.111 4.111 5 C -0.074 4.074 6 C -0.050 4.050 7 N -0.070 5.070 8 O -0.238 6.238 9 C -0.023 4.023 10 H 0.131 0.869 11 C 0.024 3.976 12 N -0.389 5.389 13 C 0.393 3.607 14 O -0.529 6.529 15 N -0.373 5.373 16 C 0.147 3.853 17 C -0.667 4.667 18 H 0.093 0.907 19 C -0.230 4.230 20 N -0.565 5.565 21 Si 0.956 3.044 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.203 1.203 25 C -0.176 4.176 26 C -0.096 4.096 27 C -0.146 4.146 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.240 0.760 37 H 0.003 0.997 38 H -0.001 1.001 39 H 0.064 0.936 40 H 0.163 0.837 41 H 0.139 0.861 42 H 0.173 0.827 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -34.900 2.938 -7.347 35.786 hybrid contribution -1.175 -0.421 -0.153 1.257 sum -36.075 2.517 -7.500 36.932 Atomic orbital electron populations 1.20930 0.89087 1.04065 1.03489 1.20516 0.97816 0.92918 0.95468 1.21237 0.93190 0.99206 1.01512 1.21418 0.95092 0.97342 0.97199 1.17920 0.86402 0.95398 1.07722 1.24667 0.94864 0.92995 0.92452 1.78462 0.88941 1.23476 1.16080 1.91290 1.16227 1.28227 1.88031 1.24002 0.95193 0.82338 1.00734 0.86916 1.21310 0.79600 0.98018 0.98703 1.44815 1.04084 1.42839 1.47168 1.16237 0.81382 0.81802 0.81251 1.90830 1.87218 1.35816 1.39021 1.45147 1.04574 1.41412 1.46190 1.18570 0.81537 0.93319 0.91833 1.22470 0.92842 1.23489 1.27926 0.90741 1.27654 1.03995 0.96694 0.94668 1.70838 1.34854 1.22768 1.28083 0.82710 0.71321 0.74704 0.75704 1.18588 1.20497 1.20335 1.23045 0.89101 0.97996 1.07422 1.21531 0.94809 0.96959 0.96285 1.21354 0.93591 0.98934 1.00719 0.89848 0.90037 0.90723 0.84035 0.86249 0.88633 0.92443 0.75361 0.75951 0.99668 1.00071 0.93585 0.83698 0.86107 0.82743 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.00 71.23 0.71 0.26 16 2 C -0.07 -0.58 5.89 -19.81 -0.12 -0.70 16 3 C -0.13 -1.54 9.68 22.23 0.22 -1.32 16 4 C -0.09 -1.43 9.69 22.53 0.22 -1.21 16 5 C -0.07 -1.11 5.87 -20.13 -0.12 -1.23 16 6 C 0.14 2.55 7.16 45.76 0.33 2.88 16 7 N -0.33 -8.35 12.12 -42.23 -0.51 -8.86 16 8 O -0.22 -6.01 12.23 -38.31 -0.47 -6.48 16 9 C 0.04 0.70 3.84 31.19 0.12 0.82 16 10 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 11 C 0.15 3.73 5.36 86.38 0.46 4.19 16 12 N -0.73 -22.65 5.56 -478.54 -2.66 -25.31 16 13 C 0.69 29.99 8.57 179.05 1.53 31.52 16 14 O -0.65 -33.63 16.34 -3.97 -0.06 -33.69 16 15 N -0.72 -32.59 5.55 -482.31 -2.68 -35.26 16 16 C 0.27 15.35 4.74 85.63 0.41 15.76 16 17 C -0.63 -35.63 9.28 25.60 0.24 -35.39 16 18 H 0.07 3.90 7.60 -2.91 -0.02 3.87 16 19 C -0.03 -1.82 5.46 84.66 0.46 -1.35 16 20 N -0.93 -58.53 13.65 21.45 0.29 -58.23 16 21 Si 1.14 49.16 29.90 68.60 2.05 51.21 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.14 -1.81 5.83 30.76 0.18 -1.63 16 26 C -0.08 -0.73 9.61 22.54 0.22 -0.51 16 27 C -0.13 -1.00 9.68 22.23 0.22 -0.78 16 28 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.08 0.15 8.08 -2.39 -0.02 0.13 16 30 H 0.07 0.23 8.08 -2.38 -0.02 0.21 16 31 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.12 2.10 7.84 -2.91 -0.02 2.08 16 33 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.41 10.57 8.49 -92.71 -0.79 9.79 16 36 H 0.41 15.60 8.34 -92.71 -0.77 14.82 16 37 H -0.01 -0.90 8.00 -2.39 -0.02 -0.92 16 38 H -0.02 -1.16 8.01 -2.39 -0.02 -1.18 16 39 H 0.25 16.66 7.22 -92.71 -0.67 15.99 16 40 H 0.15 0.87 7.95 -2.39 -0.02 0.85 16 41 H 0.12 1.42 7.91 -2.39 -0.02 1.40 16 42 H 0.15 0.66 7.36 -2.91 -0.02 0.64 16 43 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -82.43 370.89 0.62 -81.81 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.41 Total: 23.51 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.07 Total: 11.30 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -5.56 Total: -127.67 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.53 Total: -40.17 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.05 Total: 51.21 kcal Total: -82.43 0.62 -81.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800716380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.600 kcal (2) G-P(sol) polarization free energy of solvation -82.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds