Wall clock time and date at job start Tue Mar 31 2020 11:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38361 * 119.84634 * 2 1 4 4 C 1.37957 * 120.14488 * 179.97438 * 3 2 1 5 5 C 1.39607 * 119.84781 * 0.02622 * 4 3 2 6 6 C 1.47643 * 120.14789 * 179.97438 * 5 4 3 7 7 N 1.29085 * 125.86442 * 0.02639 * 6 5 4 8 8 O 1.41394 * 112.87028 * 180.33715 * 7 6 5 9 9 C 1.44195 * 107.59789 * 342.50219 * 8 7 6 10 10 H 1.09003 * 110.98006 * 267.25004 * 9 8 7 11 11 C 1.53003 * 110.97434 * 143.51723 * 9 8 7 12 12 N 1.46507 * 109.46968 * 66.45669 * 11 9 8 13 13 C 1.34775 * 119.99876 * 180.02562 * 12 11 9 14 14 O 1.21583 * 120.00144 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99585 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99665 * 179.72218 * 15 13 12 17 17 C 1.50703 * 109.47138 * 180.28062 * 16 15 13 18 18 H 1.08001 * 120.00037 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99572 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00297 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47136 * 89.99858 * 21 19 17 23 23 H 1.48503 * 109.47098 * 209.99924 * 21 19 17 24 24 H 1.48504 * 109.46915 * 329.99778 * 21 19 17 25 25 C 1.51690 * 125.86800 * 180.02562 * 6 5 4 26 26 C 1.39611 * 119.70720 * 0.24806 * 5 4 3 27 27 C 1.37961 * 119.84254 * 359.49308 * 26 5 4 28 28 H 1.08997 * 109.46734 * 89.99972 * 1 2 3 29 29 H 1.08998 * 109.46951 * 210.00101 * 1 2 3 30 30 H 1.09002 * 109.47003 * 330.00165 * 1 2 3 31 31 H 1.07996 * 119.92885 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.07464 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46943 * 306.45975 * 11 9 8 34 34 H 1.08994 * 109.47547 * 186.45269 * 11 9 8 35 35 H 0.97000 * 119.99601 * 359.97438 * 12 11 9 36 36 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 37 37 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 38 38 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 39 39 H 0.97001 * 119.99511 * 179.97438 * 20 19 17 40 40 H 1.08991 * 110.79515 * 77.10910 * 25 6 5 41 41 H 1.09005 * 110.79591 * 313.63650 * 25 6 5 42 42 H 1.07992 * 120.07943 * 179.72708 * 26 5 4 43 43 H 1.08001 * 119.92187 * 180.23056 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5752 1.2073 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7528 0.0000 0.0005 7 7 6.5091 1.0461 0.0010 8 8 7.8868 0.7281 -0.0068 9 6 8.0187 -0.6488 0.4004 10 1 8.1763 -0.7242 1.4764 11 6 9.1484 -1.3405 -0.3653 12 7 10.4323 -0.7478 0.0177 13 6 11.5752 -1.2014 -0.5340 14 8 11.5409 -2.1029 -1.3491 15 7 12.7563 -0.6557 -0.1821 16 6 13.9992 -1.1530 -0.7772 17 6 15.1677 -0.3855 -0.2145 18 1 15.0012 0.3949 0.5132 19 6 16.4494 -0.6789 -0.6296 20 7 17.4691 -0.0087 -0.1389 21 14 16.7374 -2.0282 -1.8889 22 1 16.6941 -1.4478 -3.2551 23 1 18.0671 -2.6470 -1.6559 24 1 15.6801 -3.0626 -1.7567 25 6 6.6415 -1.2293 0.0000 26 6 3.5752 -1.2072 -0.0053 27 6 2.1956 -1.2000 -0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6520 2.1332 0.0004 32 1 4.1116 2.1447 0.0001 33 1 8.9936 -1.2112 -1.4364 34 1 9.1529 -2.4035 -0.1245 35 1 10.4596 -0.0283 0.6677 36 1 12.7838 0.0632 0.4685 37 1 14.1147 -2.2119 -0.5457 38 1 13.9633 -1.0192 -1.8583 39 1 18.3708 -0.2154 -0.4307 40 1 6.6840 -1.6756 -0.9935 41 1 6.2984 -1.9553 0.7371 42 1 4.1115 -2.1446 -0.0098 43 1 1.6520 -2.1332 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800716382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:36 Heat of formation + Delta-G solvation = -17.037021 kcal Electronic energy + Delta-G solvation = -24437.888379 eV Core-core repulsion = 20676.689535 eV Total energy + Delta-G solvation = -3761.198844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53999 -40.80385 -39.99063 -36.52454 -35.88804 -35.03882 -34.40994 -32.58987 -32.47940 -31.83839 -29.86662 -27.98454 -27.17145 -24.20624 -23.60450 -23.28667 -22.65738 -21.92114 -20.88534 -19.93624 -18.40561 -18.24752 -17.85115 -16.98715 -16.68926 -16.46974 -16.28432 -16.13880 -15.97529 -15.36623 -15.17194 -14.93940 -14.65509 -14.56956 -14.41355 -14.37960 -14.18407 -14.02158 -13.54718 -13.28836 -13.08549 -13.02752 -12.81561 -12.69420 -12.55932 -12.27195 -12.07121 -11.91471 -11.65657 -11.60494 -11.34525 -10.91463 -10.83244 -10.37034 -9.93818 -9.69760 -9.38822 -8.39364 -6.46560 -0.32315 0.43907 1.20454 1.34505 1.35769 1.49504 1.74043 1.95757 2.17636 2.29557 2.81526 2.91350 2.96146 3.30737 3.34439 3.60780 3.66733 3.89135 3.95706 3.98364 4.06039 4.38354 4.41792 4.46713 4.51166 4.53552 4.68819 4.77249 4.80886 4.83692 4.88049 4.92753 5.05542 5.11899 5.24665 5.27530 5.40057 5.42644 5.44470 5.53715 5.64178 5.93734 5.97681 6.25100 6.31139 6.55322 7.12367 7.22492 7.61879 8.75494 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.048972 B = 0.001764 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.614918 B =15865.965314 C =16239.993881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.134 4.134 4 C -0.091 4.091 5 C -0.073 4.073 6 C 0.138 3.862 7 N -0.328 5.328 8 O -0.219 6.219 9 C 0.034 3.966 10 H 0.111 0.889 11 C 0.150 3.850 12 N -0.735 5.735 13 C 0.697 3.303 14 O -0.642 6.642 15 N -0.722 5.722 16 C 0.251 3.749 17 C -0.548 4.548 18 H 0.057 0.943 19 C 0.026 3.974 20 N -0.932 5.932 21 Si 0.940 3.060 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.136 4.136 26 C -0.076 4.076 27 C -0.128 4.128 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.409 0.591 36 H 0.404 0.596 37 H 0.014 0.986 38 H 0.009 0.991 39 H 0.273 0.727 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.086 -3.714 3.098 39.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.068 4.068 3 C -0.152 4.152 4 C -0.111 4.111 5 C -0.074 4.074 6 C -0.051 4.051 7 N -0.070 5.070 8 O -0.237 6.237 9 C -0.024 4.024 10 H 0.129 0.871 11 C 0.025 3.975 12 N -0.392 5.392 13 C 0.396 3.604 14 O -0.525 6.525 15 N -0.376 5.376 16 C 0.127 3.873 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.174 4.174 20 N -0.570 5.570 21 Si 0.763 3.237 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.183 1.183 25 C -0.175 4.175 26 C -0.096 4.096 27 C -0.146 4.146 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.245 0.755 36 H 0.239 0.761 37 H 0.032 0.968 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -38.596 -3.273 2.304 38.803 hybrid contribution 1.107 -0.164 0.099 1.123 sum -37.489 -3.437 2.403 37.723 Atomic orbital electron populations 1.20932 0.89119 1.04091 1.03425 1.20516 0.97798 0.92935 0.95532 1.21232 0.93210 0.99191 1.01544 1.21418 0.95084 0.97373 0.97241 1.17927 0.86470 0.95364 1.07642 1.24676 0.94837 0.93089 0.92503 1.78467 0.89024 1.23537 1.16014 1.91290 1.16128 1.28282 1.88040 1.24023 0.95333 0.82318 1.00763 0.87095 1.21309 0.79564 0.97780 0.98889 1.44847 1.04393 1.41804 1.48121 1.16142 0.81189 0.81882 0.81148 1.90827 1.87127 1.34911 1.39586 1.45129 1.04800 1.40323 1.47307 1.18966 0.81052 0.94285 0.92984 1.21289 0.90888 1.20214 1.26206 0.92471 1.25605 0.95428 0.98369 0.97983 1.69991 0.99784 1.42408 1.44860 0.85820 0.78340 0.79930 0.79569 1.19098 1.19636 1.18285 1.23046 0.89097 0.97923 1.07415 1.21531 0.94782 0.96972 0.96265 1.21352 0.93619 0.98905 1.00709 0.89996 0.89962 0.90708 0.84109 0.86302 0.92226 0.88464 0.75477 0.76070 0.96810 0.97333 0.91821 0.85995 0.83740 0.82663 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 10.01 71.24 0.71 0.27 16 2 C -0.07 -0.58 5.89 -19.81 -0.12 -0.69 16 3 C -0.13 -1.53 9.68 22.23 0.22 -1.31 16 4 C -0.09 -1.42 9.69 22.53 0.22 -1.21 16 5 C -0.07 -1.08 5.87 -20.13 -0.12 -1.20 16 6 C 0.14 2.47 7.16 45.76 0.33 2.80 16 7 N -0.33 -8.26 12.12 -42.23 -0.51 -8.77 16 8 O -0.22 -5.87 12.22 -38.32 -0.47 -6.34 16 9 C 0.03 0.63 3.84 31.18 0.12 0.75 16 10 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 11 C 0.15 3.49 5.37 86.38 0.46 3.96 16 12 N -0.73 -21.51 5.55 -478.53 -2.66 -24.17 16 13 C 0.70 28.02 8.57 179.05 1.53 29.55 16 14 O -0.64 -30.60 16.34 -3.98 -0.06 -30.66 16 15 N -0.72 -30.79 5.55 -482.29 -2.68 -33.47 16 16 C 0.25 12.83 4.50 85.63 0.38 13.22 16 17 C -0.55 -31.18 9.83 25.60 0.25 -30.93 16 18 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 19 C 0.03 1.52 5.47 84.65 0.46 1.99 16 20 N -0.93 -56.60 13.96 21.45 0.30 -56.30 16 21 Si 0.94 44.89 27.47 68.60 1.88 46.77 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 25 C -0.14 -1.69 5.82 30.75 0.18 -1.51 16 26 C -0.08 -0.69 9.61 22.54 0.22 -0.48 16 27 C -0.13 -0.95 9.68 22.23 0.22 -0.74 16 28 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.08 0.12 8.08 -2.39 -0.02 0.10 16 30 H 0.07 0.21 8.08 -2.39 -0.02 0.20 16 31 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 32 H 0.12 2.09 7.84 -2.91 -0.02 2.07 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.41 10.22 8.49 -92.71 -0.79 9.43 16 36 H 0.40 15.30 8.34 -92.71 -0.77 14.53 16 37 H 0.01 0.74 7.20 -2.38 -0.02 0.72 16 38 H 0.01 0.46 7.57 -2.39 -0.02 0.45 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.12 1.30 7.91 -2.39 -0.02 1.28 16 41 H 0.14 0.76 7.97 -2.38 -0.02 0.74 16 42 H 0.16 0.57 7.38 -2.91 -0.02 0.55 16 43 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -78.65 368.61 0.30 -78.35 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.57 Total: 20.13 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 5.07 Total: 14.47 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.55 Total: -122.71 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.53 Total: -37.00 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -78.65 0.30 -78.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800716382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.310 kcal (2) G-P(sol) polarization free energy of solvation -78.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds