Wall clock time and date at job start Tue Mar 31 2020 11:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38821 * 119.99048 * 2 1 4 4 C 1.38557 * 118.03881 * 179.97438 * 3 2 1 5 5 C 1.50707 * 121.04909 * 180.02562 * 4 3 2 6 6 F 1.39898 * 109.46945 * 359.97438 * 5 4 3 7 7 F 1.39897 * 109.46691 * 119.97541 * 5 4 3 8 8 F 1.39896 * 109.47268 * 239.97959 * 5 4 3 9 9 C 1.39477 * 117.90691 * 0.02562 * 4 3 2 10 10 N 1.39048 * 120.15903 * 179.97438 * 9 4 3 11 11 C 1.46499 * 119.99905 * 179.72279 * 10 9 4 12 12 C 1.53004 * 109.47198 * 180.27813 * 11 10 9 13 13 C 1.52998 * 109.46876 * 299.99984 * 12 11 10 14 14 C 1.53005 * 109.46795 * 60.00011 * 12 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.46940 * 179.97438 * 15 12 11 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00213 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00100 * 20 18 16 22 22 H 1.48499 * 109.47548 * 209.99879 * 20 18 16 23 23 H 1.48499 * 109.47078 * 330.00388 * 20 18 16 24 24 N 1.32494 * 119.68272 * 0.27391 * 9 4 3 25 25 N 1.28352 * 122.07136 * 359.40002 * 24 9 4 26 26 H 1.09003 * 109.46653 * 90.00395 * 1 2 3 27 27 H 1.09003 * 109.46680 * 209.99834 * 1 2 3 28 28 H 1.08996 * 109.47365 * 329.99958 * 1 2 3 29 29 H 1.08000 * 120.97739 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00245 * 0.02562 * 10 9 4 31 31 H 1.09009 * 109.47454 * 300.27583 * 11 10 9 32 32 H 1.08998 * 109.47492 * 60.27877 * 11 10 9 33 33 H 1.08996 * 109.47009 * 60.00253 * 13 12 11 34 34 H 1.09004 * 109.46783 * 179.97438 * 13 12 11 35 35 H 1.08998 * 109.47156 * 300.00070 * 13 12 11 36 36 H 1.09000 * 109.47011 * 60.00556 * 14 12 11 37 37 H 1.09004 * 109.46658 * 180.02562 * 14 12 11 38 38 H 1.08996 * 109.47069 * 299.99740 * 14 12 11 39 39 H 1.08995 * 109.47672 * 299.99669 * 15 12 11 40 40 H 1.09007 * 109.47288 * 60.00489 * 15 12 11 41 41 H 0.97000 * 120.00572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5857 1.1552 0.0005 5 6 4.4065 2.4191 0.0012 6 9 3.5543 3.5285 0.0005 7 9 5.2126 2.4509 1.1441 8 9 5.2144 2.4510 -1.1405 9 6 4.1961 -0.0989 0.0005 10 7 5.5828 -0.2009 0.0005 11 6 6.2203 -1.5199 0.0066 12 6 7.7411 -1.3513 0.0123 13 6 8.1735 -0.5816 -1.2373 14 6 8.1634 -0.5749 1.2612 15 6 8.4068 -2.7288 0.0193 16 6 9.9046 -2.5628 0.0242 17 1 10.3383 -1.5737 0.0229 18 6 10.7214 -3.6736 0.0304 19 7 10.1934 -4.8781 0.0314 20 14 12.5780 -3.4678 0.0372 21 1 13.0644 -3.4097 1.4391 22 1 13.2064 -4.6202 -0.6573 23 1 12.9392 -2.2100 -0.6646 24 7 3.4483 -1.1926 -0.0055 25 7 2.1658 -1.1414 -0.0001 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6768 2.1466 -0.0004 30 1 6.1282 0.6014 0.0009 31 1 5.9123 -2.0683 0.8969 32 1 5.9195 -2.0730 -0.8831 33 1 7.6992 0.3997 -1.2418 34 1 9.2568 -0.4612 -1.2331 35 1 7.8725 -1.1347 -2.1270 36 1 7.8554 -1.1233 2.1514 37 1 9.2468 -0.4544 1.2650 38 1 7.6891 0.4065 1.2566 39 1 8.0988 -3.2768 0.9097 40 1 8.1059 -3.2824 -0.8703 41 1 10.7679 -5.6596 0.0354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808094049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:53 Heat of formation + Delta-G solvation = -110.050906 kcal Electronic energy + Delta-G solvation = -27369.638601 eV Core-core repulsion = 23062.549632 eV Total energy + Delta-G solvation = -4307.088969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.53046 -48.05214 -47.95339 -41.29986 -38.06010 -35.41496 -34.16830 -32.77531 -31.76217 -28.08483 -27.21002 -26.96197 -26.55981 -26.16098 -23.86122 -22.55772 -22.39679 -19.42110 -18.83077 -18.58654 -18.10462 -17.71646 -17.12779 -16.33694 -15.66267 -15.11667 -14.79669 -14.66356 -14.62748 -14.45234 -14.40224 -14.29899 -14.24071 -14.11051 -13.88827 -13.31136 -13.15150 -12.84999 -12.80542 -12.49204 -12.46145 -12.08658 -11.39675 -11.38578 -11.05006 -10.88319 -10.86687 -10.68512 -10.47491 -10.42992 -10.28551 -9.86745 -9.85990 -9.25878 -8.96736 -8.37693 -8.12851 -6.01743 -4.03151 0.24142 0.91278 2.23033 2.90310 3.24540 3.30113 3.30366 3.37283 3.39207 3.50166 3.93274 4.03910 4.29022 4.43397 4.48452 4.57462 4.96224 5.11621 5.30517 5.33743 5.36964 5.41837 5.54666 5.65024 5.73615 5.88825 6.11210 6.15440 6.16960 6.32273 6.57202 6.58821 6.84423 7.00211 7.02426 7.08704 7.29693 7.60932 7.72454 7.96478 8.38067 8.63280 9.01281 9.60161 11.09649 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.003375 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.527395 B = 8295.502116 C = 9304.691069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.007 4.007 3 C -0.017 4.017 4 C -0.261 4.261 5 C 0.518 3.482 6 F -0.173 7.173 7 F -0.170 7.170 8 F -0.170 7.170 9 C 0.383 3.617 10 N -0.690 5.690 11 C 0.131 3.869 12 C -0.074 4.074 13 C -0.129 4.129 14 C -0.129 4.129 15 C 0.038 3.962 16 C -0.512 4.512 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.285 5.285 25 N -0.168 5.168 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.409 0.591 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.809 15.597 -0.071 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 C -0.046 4.046 4 C -0.279 4.279 5 C 0.463 3.537 6 F -0.154 7.154 7 F -0.152 7.152 8 F -0.151 7.151 9 C 0.139 3.861 10 N -0.321 5.321 11 C 0.009 3.991 12 C -0.074 4.074 13 C -0.186 4.186 14 C -0.186 4.186 15 C 0.001 3.999 16 C -0.551 4.551 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.139 5.139 25 N -0.013 5.013 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.248 0.752 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.597 13.598 -0.081 22.239 hybrid contribution 1.540 2.139 0.013 2.636 sum -16.057 15.737 -0.068 22.483 Atomic orbital electron populations 1.20523 0.86999 1.03827 1.03344 1.22547 0.99127 0.89344 1.04494 1.21960 0.91549 1.01015 0.90099 1.20629 0.95874 0.92521 1.18907 1.17906 0.78174 0.83390 0.74201 1.93172 1.70352 1.55622 1.96258 1.93258 1.74470 1.96666 1.50757 1.93258 1.74372 1.96664 1.50854 1.19787 0.88109 0.89384 0.88822 1.45227 1.00288 1.11555 1.74994 1.21848 0.93402 0.81348 1.02501 1.20959 0.90698 1.00584 0.95208 1.21779 1.02404 0.97121 0.97283 1.21783 1.02420 0.97097 0.97296 1.19078 0.94984 0.88251 0.97620 1.21170 0.91055 0.92402 1.50442 0.92259 1.25000 0.98533 0.95386 0.95491 1.69957 1.35066 0.97529 1.50748 0.86648 0.85981 0.77641 0.78052 1.20759 1.21312 1.19944 1.73327 0.98878 1.22692 1.19016 1.72690 1.00672 1.24933 1.02983 0.90324 0.90021 0.90611 0.82292 0.75177 0.91052 0.91025 0.95469 0.91175 0.93145 0.93148 0.91181 0.95468 0.96198 0.96186 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.19 36.00 0.37 -0.21 16 2 C -0.01 -0.07 6.87 -82.40 -0.57 -0.64 16 3 C -0.02 -0.16 9.24 -39.25 -0.36 -0.53 16 4 C -0.26 -3.14 5.42 -104.04 -0.56 -3.71 16 5 C 0.52 5.87 2.81 36.01 0.10 5.97 16 6 F -0.17 -1.71 16.12 2.25 0.04 -1.67 16 7 F -0.17 -2.06 16.36 2.25 0.04 -2.03 16 8 F -0.17 -2.06 16.36 2.25 0.04 -2.03 16 9 C 0.38 5.60 7.49 -154.77 -1.16 4.44 16 10 N -0.69 -10.40 4.92 -60.29 -0.30 -10.70 16 11 C 0.13 2.26 4.61 -4.04 -0.02 2.24 16 12 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 13 C -0.13 -2.30 8.05 37.16 0.30 -2.01 16 14 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 15 C 0.04 0.92 4.04 -27.88 -0.11 0.81 16 16 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 17 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 N -0.29 -4.56 10.74 31.23 0.34 -4.22 16 25 N -0.17 -2.38 11.41 33.61 0.38 -2.00 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.16 0.98 7.33 -52.49 -0.38 0.60 16 30 H 0.41 5.85 3.77 -40.82 -0.15 5.70 16 31 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 34 H 0.07 1.35 6.62 -51.93 -0.34 1.00 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -29.54 345.74 -5.87 -35.41 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.17 Total: 0.74 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.16 Total: -9.40 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 1.16 Total: -42.37 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.11 Total: -5.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.54 -5.87 -35.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808094049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.641 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds