Wall clock time and date at job start Tue Mar 31 2020 11:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38180 * 119.96860 * 2 1 4 4 C 1.38133 * 120.14019 * 180.23362 * 3 2 1 5 5 C 1.38939 * 120.07446 * 359.48951 * 4 3 2 6 6 N 1.39941 * 120.03976 * 180.27994 * 5 4 3 7 7 C 1.47051 * 125.41182 * 174.25636 * 6 5 4 8 8 C 1.54107 * 103.86142 * 179.86652 * 7 6 5 9 9 N 1.47046 * 103.86244 * 0.37489 * 8 7 6 10 10 C 1.33949 * 125.40647 * 354.55810 * 6 5 4 11 11 O 1.21584 * 123.04258 * 359.97438 * 10 6 5 12 12 C 1.38728 * 119.92482 * 0.25352 * 5 4 3 13 13 C 1.38767 * 119.86273 * 0.02562 * 12 5 4 14 14 N 1.39923 * 120.03276 * 180.02562 * 13 12 5 15 15 C 1.34780 * 120.00226 * 334.41034 * 14 13 12 16 16 O 1.21289 * 119.99762 * 3.90859 * 15 14 13 17 17 C 1.50699 * 119.99715 * 183.91136 * 15 14 13 18 18 C 1.53003 * 109.46879 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47227 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99642 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00082 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47207 * 59.99966 * 23 21 19 25 25 H 1.48503 * 109.46879 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46899 * 299.99774 * 23 21 19 27 27 H 1.08990 * 109.47198 * 270.27602 * 1 2 3 28 28 H 1.09002 * 109.46519 * 30.27596 * 1 2 3 29 29 H 1.09000 * 109.46913 * 150.27408 * 1 2 3 30 30 H 1.08001 * 119.92694 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.96597 * 179.77116 * 4 3 2 32 32 H 1.08999 * 110.54972 * 298.58920 * 7 6 5 33 33 H 1.09004 * 110.54735 * 61.40682 * 7 6 5 34 34 H 1.08994 * 110.76073 * 241.67792 * 8 7 6 35 35 H 1.09002 * 110.46306 * 118.92800 * 8 7 6 36 36 H 0.97005 * 125.41319 * 179.74742 * 9 8 7 37 37 H 1.08001 * 120.06431 * 179.97438 * 12 5 4 38 38 H 0.97000 * 119.99440 * 154.40684 * 14 13 12 39 39 H 1.09003 * 109.46832 * 299.99331 * 17 15 14 40 40 H 1.08992 * 109.47233 * 60.00080 * 17 15 14 41 41 H 1.09008 * 109.46894 * 300.00004 * 18 17 15 42 42 H 1.09001 * 109.47220 * 59.99404 * 18 17 15 43 43 H 0.96993 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1971 0.0000 4 6 3.5786 1.2012 -0.0049 5 6 4.2785 0.0010 0.0009 6 7 5.6779 0.0061 0.0019 7 6 6.5342 -1.1828 0.1277 8 6 7.9655 -0.6150 0.0661 9 7 7.7637 0.8344 -0.0786 10 6 6.4501 1.0952 -0.1059 11 8 5.9994 2.2188 -0.2189 12 6 3.5884 -1.2025 0.0063 13 6 2.2008 -1.2034 0.0053 14 7 1.5012 -2.4151 0.0113 15 6 2.0763 -3.5278 -0.4866 16 8 3.2250 -3.4950 -0.8745 17 6 1.2920 -4.8124 -0.5612 18 6 2.1709 -5.9125 -1.1598 19 6 1.3869 -7.1973 -1.2339 20 1 0.3642 -7.2265 -0.8882 21 6 1.9753 -8.3356 -1.7431 22 7 3.2209 -8.3001 -2.1637 23 14 1.0032 -9.9280 -1.8356 24 1 -0.1931 -9.7286 -2.6923 25 1 1.8564 -10.9957 -2.4165 26 1 0.5740 -10.3258 -0.4708 27 1 -0.3633 0.0050 1.0275 28 1 -0.3632 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6556 2.1314 -0.0004 31 1 4.1152 2.1385 -0.0086 32 1 6.3590 -1.6814 1.0810 33 1 6.3608 -1.8686 -0.7016 34 1 8.5028 -1.0141 -0.7941 35 1 8.5032 -0.8362 0.9881 36 1 8.4696 1.4965 -0.1438 37 1 4.1302 -2.1368 0.0104 38 1 0.6023 -2.4544 0.3737 39 1 0.9771 -5.1045 0.4406 40 1 0.4139 -4.6660 -1.1900 41 1 2.4864 -5.6206 -2.1616 42 1 3.0490 -6.0587 -0.5307 43 1 3.6346 -9.1008 -2.5222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812546421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:56 Heat of formation + Delta-G solvation = -22.526166 kcal Electronic energy + Delta-G solvation = -26002.935855 eV Core-core repulsion = 22241.498984 eV Total energy + Delta-G solvation = -3761.436871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62544 -40.29482 -38.32354 -36.69736 -35.36358 -33.84084 -33.57075 -31.50931 -31.24859 -29.57477 -29.14177 -26.67753 -25.71776 -23.92359 -22.61312 -22.50595 -21.39958 -20.19216 -19.70645 -18.31379 -17.26632 -17.06031 -16.91300 -16.09764 -15.61088 -15.58795 -15.25040 -14.71491 -14.51537 -14.44498 -14.13617 -13.92303 -13.79104 -13.56396 -13.28323 -13.17471 -12.61704 -12.51888 -12.40384 -12.23293 -11.94338 -11.72259 -11.50019 -11.22579 -10.96850 -10.67715 -10.56707 -10.07318 -10.05109 -9.83366 -9.71218 -9.43167 -9.22629 -9.05327 -8.38364 -8.15332 -7.60073 -6.02321 -4.06909 1.33851 1.50565 2.23697 2.85332 3.07814 3.30722 3.31677 3.35990 3.38538 3.55794 3.94595 4.08215 4.42464 4.63199 4.66584 4.96892 4.99577 5.13231 5.20920 5.30160 5.33008 5.36743 5.43807 5.49479 5.55327 5.58320 5.83800 5.89692 5.95821 6.09202 6.10299 6.36030 6.39307 6.52967 6.59580 6.75320 6.78548 6.82974 7.22539 7.28770 7.65696 7.67589 7.76238 7.98754 8.28655 8.30021 8.53034 9.00584 9.57042 11.08520 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003064 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.957903 B = 9135.326216 C =10906.195011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.151 4.151 3 C -0.073 4.073 4 C -0.177 4.177 5 C 0.199 3.801 6 N -0.565 5.565 7 C 0.082 3.918 8 C 0.093 3.907 9 N -0.738 5.738 10 C 0.701 3.299 11 O -0.572 6.572 12 C -0.175 4.175 13 C 0.184 3.816 14 N -0.678 5.678 15 C 0.510 3.490 16 O -0.513 6.513 17 C -0.130 4.130 18 C 0.038 3.962 19 C -0.529 4.529 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.431 0.569 37 H 0.160 0.840 38 H 0.410 0.590 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 17.889 7.231 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.198 4.198 5 C 0.105 3.895 6 N -0.291 5.291 7 C -0.040 4.040 8 C -0.032 4.032 9 N -0.400 5.400 10 C 0.402 3.598 11 O -0.449 6.449 12 C -0.198 4.198 13 C 0.088 3.912 14 N -0.323 5.323 15 C 0.300 3.700 16 O -0.387 6.387 17 C -0.170 4.170 18 C 0.000 4.000 19 C -0.568 4.568 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.172 0.828 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.273 0.727 37 H 0.178 0.822 38 H 0.246 0.754 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.133 18.231 6.781 19.885 hybrid contribution -0.488 -0.850 0.035 0.981 sum 3.645 17.381 6.816 19.022 Atomic orbital electron populations 1.20653 0.91122 1.02836 1.01950 1.19587 0.96020 0.91773 1.08133 1.20630 0.93202 0.96751 0.98637 1.21502 0.94271 0.98326 1.05739 1.17238 0.78951 0.94310 0.99038 1.44431 1.04119 1.07925 1.72645 1.22639 0.87565 0.88877 1.04963 1.22429 0.96703 0.80533 1.03565 1.45081 1.06345 1.09174 1.79411 1.15811 0.81998 0.84143 0.77877 1.90843 1.75232 1.21628 1.57227 1.21191 0.93229 0.98066 1.07319 1.17331 0.90569 0.85174 0.98151 1.43925 1.19329 1.07333 1.61711 1.21850 0.88004 0.85168 0.74962 1.90561 1.17828 1.84457 1.45854 1.21927 1.00299 0.91533 1.03199 1.18906 0.94201 0.90117 0.96739 1.21160 0.98824 0.94608 1.42164 0.92599 1.25012 0.94924 0.99015 0.95330 1.69977 1.12163 1.29015 1.41633 0.86643 0.79886 0.83024 0.78332 1.20222 1.21266 1.20226 0.91511 0.91374 0.91817 0.85591 0.82801 0.88914 0.88294 0.89287 0.89469 0.72651 0.82243 0.75402 0.89783 0.89767 0.95716 0.95737 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.44 36.01 0.34 -0.68 16 2 C -0.15 -1.92 5.90 -104.40 -0.62 -2.53 16 3 C -0.07 -0.92 9.69 -39.64 -0.38 -1.31 16 4 C -0.18 -2.60 9.29 -39.36 -0.37 -2.97 16 5 C 0.20 3.03 6.62 -83.72 -0.55 2.48 16 6 N -0.56 -7.63 3.16 -118.26 -0.37 -8.01 16 7 C 0.08 0.83 6.48 -3.16 -0.02 0.81 16 8 C 0.09 0.63 8.06 -3.17 -0.03 0.61 16 9 N -0.74 -6.70 6.37 -64.70 -0.41 -7.11 16 10 C 0.70 9.51 8.52 -88.39 -0.75 8.76 16 11 O -0.57 -9.47 14.75 5.29 0.08 -9.39 16 12 C -0.18 -2.79 8.23 -39.20 -0.32 -3.12 16 13 C 0.18 2.73 6.43 -83.72 -0.54 2.20 16 14 N -0.68 -9.61 4.96 -9.88 -0.05 -9.65 16 15 C 0.51 9.20 7.72 -10.98 -0.08 9.12 16 16 O -0.51 -10.96 12.90 5.55 0.07 -10.89 16 17 C -0.13 -2.45 5.64 -27.88 -0.16 -2.61 16 18 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 19 C -0.53 -14.47 9.11 -34.44 -0.31 -14.79 16 20 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 23 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.06 0.58 6.99 -51.93 -0.36 0.22 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.15 2.41 5.26 -52.48 -0.28 2.13 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.06 8.12 -51.93 -0.42 0.64 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.43 2.90 8.96 -40.82 -0.37 2.54 16 37 H 0.16 2.77 4.75 -52.49 -0.25 2.52 16 38 H 0.41 4.42 7.42 -40.82 -0.30 4.11 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -35.70 355.88 -9.36 -45.06 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.74 Total: 5.97 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -4.01 Total: -1.61 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.10 Total: -50.59 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.15 Total: -20.29 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.70 -9.36 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.533 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds