Wall clock time and date at job start Tue Mar 31 2020 11:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38180 * 119.96860 * 2 1 4 4 C 1.38133 * 120.14019 * 180.23362 * 3 2 1 5 5 C 1.38939 * 120.07446 * 359.48951 * 4 3 2 6 6 N 1.39941 * 120.03976 * 180.27994 * 5 4 3 7 7 C 1.47051 * 125.41182 * 174.25636 * 6 5 4 8 8 C 1.54107 * 103.86142 * 179.86652 * 7 6 5 9 9 N 1.47046 * 103.86244 * 0.37489 * 8 7 6 10 10 C 1.33949 * 125.40647 * 354.55810 * 6 5 4 11 11 O 1.21584 * 123.04258 * 359.97438 * 10 6 5 12 12 C 1.38728 * 119.92482 * 0.25352 * 5 4 3 13 13 C 1.38767 * 119.86273 * 0.02562 * 12 5 4 14 14 N 1.39923 * 120.03276 * 180.02562 * 13 12 5 15 15 C 1.34780 * 120.00226 * 334.41034 * 14 13 12 16 16 O 1.21289 * 119.99762 * 3.90859 * 15 14 13 17 17 C 1.50699 * 119.99715 * 183.91136 * 15 14 13 18 18 C 1.53003 * 109.46879 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47227 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99642 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00082 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47207 * 59.99966 * 23 21 19 25 25 H 1.48503 * 109.46879 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46899 * 299.99774 * 23 21 19 27 27 H 1.08990 * 109.47198 * 270.27602 * 1 2 3 28 28 H 1.09002 * 109.46519 * 30.27596 * 1 2 3 29 29 H 1.09000 * 109.46913 * 150.27408 * 1 2 3 30 30 H 1.08001 * 119.92694 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.96597 * 179.77116 * 4 3 2 32 32 H 1.08999 * 110.54972 * 298.58920 * 7 6 5 33 33 H 1.09004 * 110.54735 * 61.40682 * 7 6 5 34 34 H 1.08994 * 110.76073 * 241.67792 * 8 7 6 35 35 H 1.09002 * 110.46306 * 118.92800 * 8 7 6 36 36 H 0.97005 * 125.41319 * 179.74742 * 9 8 7 37 37 H 1.08001 * 120.06431 * 179.97438 * 12 5 4 38 38 H 0.97000 * 119.99440 * 154.40684 * 14 13 12 39 39 H 1.09003 * 109.46832 * 299.99331 * 17 15 14 40 40 H 1.08992 * 109.47233 * 60.00080 * 17 15 14 41 41 H 1.09008 * 109.46894 * 300.00004 * 18 17 15 42 42 H 1.09001 * 109.47220 * 59.99404 * 18 17 15 43 43 H 0.96993 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1971 0.0000 4 6 3.5786 1.2012 -0.0049 5 6 4.2785 0.0010 0.0009 6 7 5.6779 0.0061 0.0019 7 6 6.5342 -1.1828 0.1277 8 6 7.9655 -0.6150 0.0661 9 7 7.7637 0.8344 -0.0786 10 6 6.4501 1.0952 -0.1059 11 8 5.9994 2.2188 -0.2189 12 6 3.5884 -1.2025 0.0063 13 6 2.2008 -1.2034 0.0053 14 7 1.5012 -2.4151 0.0113 15 6 2.0763 -3.5278 -0.4866 16 8 3.2250 -3.4950 -0.8745 17 6 1.2920 -4.8124 -0.5612 18 6 2.1709 -5.9125 -1.1598 19 6 1.3869 -7.1973 -1.2339 20 1 0.3642 -7.2265 -0.8882 21 6 1.9753 -8.3356 -1.7431 22 7 3.2209 -8.3001 -2.1637 23 14 1.0032 -9.9280 -1.8356 24 1 -0.1931 -9.7286 -2.6923 25 1 1.8564 -10.9957 -2.4165 26 1 0.5740 -10.3258 -0.4708 27 1 -0.3633 0.0050 1.0275 28 1 -0.3632 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6556 2.1314 -0.0004 31 1 4.1152 2.1385 -0.0086 32 1 6.3590 -1.6814 1.0810 33 1 6.3608 -1.8686 -0.7016 34 1 8.5028 -1.0141 -0.7941 35 1 8.5032 -0.8362 0.9881 36 1 8.4696 1.4965 -0.1438 37 1 4.1302 -2.1368 0.0104 38 1 0.6023 -2.4544 0.3737 39 1 0.9771 -5.1045 0.4406 40 1 0.4139 -4.6660 -1.1900 41 1 2.4864 -5.6206 -2.1616 42 1 3.0490 -6.0587 -0.5307 43 1 3.6346 -9.1008 -2.5222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812546421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:55 Heat of formation + Delta-G solvation = -47.514885 kcal Electronic energy + Delta-G solvation = -26004.019447 eV Core-core repulsion = 22241.498984 eV Total energy + Delta-G solvation = -3762.520464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.60209 -41.54883 -39.55940 -37.73126 -36.47115 -35.58178 -34.94557 -33.11867 -32.40623 -30.83971 -29.99356 -27.95294 -27.23282 -25.03908 -23.91063 -23.51839 -22.79625 -21.30317 -21.12101 -19.35140 -18.78768 -18.28274 -17.78866 -17.66711 -16.87771 -16.75321 -16.55223 -16.41802 -15.85827 -15.37290 -15.11799 -15.03461 -14.93038 -14.66340 -14.56069 -14.18603 -14.10824 -13.93532 -13.42699 -13.21241 -13.20377 -12.91516 -12.76851 -12.65447 -12.51760 -12.49362 -11.90188 -11.76892 -11.62025 -11.29622 -11.18291 -10.90045 -10.54290 -10.53404 -10.22333 -9.31690 -8.66335 -8.16441 -6.29603 0.23713 0.36084 1.32086 1.44205 1.47680 1.55222 1.60936 1.90582 2.08633 2.45198 2.77993 2.84894 3.17105 3.36276 3.66681 3.96459 3.98616 4.03798 4.08993 4.24873 4.35469 4.49287 4.52779 4.54509 4.56042 4.64361 4.77704 4.80802 4.89038 4.91242 5.08145 5.15245 5.29497 5.40707 5.47314 5.52061 5.55433 5.62948 5.65249 5.86972 6.03009 6.15073 6.19218 6.30510 6.48584 6.88183 7.18749 7.32264 7.40426 8.95674 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003064 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.957903 B = 9135.326216 C =10906.195011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.141 4.141 3 C -0.069 4.069 4 C -0.189 4.189 5 C 0.184 3.816 6 N -0.574 5.574 7 C 0.074 3.926 8 C 0.100 3.900 9 N -0.722 5.722 10 C 0.690 3.310 11 O -0.609 6.609 12 C -0.192 4.192 13 C 0.164 3.836 14 N -0.655 5.655 15 C 0.511 3.489 16 O -0.556 6.556 17 C -0.117 4.117 18 C 0.043 3.957 19 C -0.543 4.543 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.289 1.289 26 H -0.263 1.263 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.443 0.557 37 H 0.140 0.860 38 H 0.429 0.571 39 H 0.111 0.889 40 H 0.109 0.891 41 H -0.016 1.016 42 H -0.012 1.012 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 18.138 8.203 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C -0.088 4.088 4 C -0.210 4.210 5 C 0.089 3.911 6 N -0.300 5.300 7 C -0.048 4.048 8 C -0.023 4.023 9 N -0.384 5.384 10 C 0.390 3.610 11 O -0.490 6.490 12 C -0.215 4.215 13 C 0.068 3.932 14 N -0.301 5.301 15 C 0.302 3.698 16 O -0.433 6.433 17 C -0.157 4.157 18 C 0.006 3.994 19 C -0.581 4.581 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.215 1.215 26 H -0.187 1.187 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.161 0.839 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.288 0.712 37 H 0.157 0.843 38 H 0.269 0.731 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.002 0.998 42 H 0.006 0.994 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.027 18.493 7.787 20.168 hybrid contribution 0.204 -0.861 -0.259 0.922 sum 2.231 17.633 7.528 19.301 Atomic orbital electron populations 1.20765 0.88163 1.03932 1.03664 1.19930 0.98005 0.90534 1.05976 1.20998 0.92466 0.98162 0.97140 1.21594 0.95420 0.97623 1.06372 1.17403 0.80013 0.94296 0.99425 1.44579 1.03982 1.08987 1.72416 1.22841 0.89150 0.88121 1.04714 1.22641 0.94774 0.78700 1.06229 1.45046 1.04932 1.10571 1.77885 1.16093 0.83265 0.83627 0.77980 1.90801 1.76215 1.22944 1.59045 1.21094 0.94120 0.97498 1.08780 1.17534 0.90403 0.85949 0.99291 1.43530 1.19833 1.06155 1.60562 1.21641 0.87320 0.85925 0.74931 1.90573 1.19611 1.85148 1.47987 1.21679 0.99496 0.89893 1.04582 1.18684 0.94117 0.92394 0.94246 1.21680 0.99743 0.95193 1.41515 0.90603 1.26069 0.95910 1.03319 0.94900 1.70152 1.14322 1.30115 1.42938 0.85433 0.78332 0.77835 0.79019 1.18880 1.21494 1.18732 0.89339 0.89689 0.91370 0.82500 0.83886 0.88327 0.89764 0.87132 0.86244 0.71220 0.84297 0.73141 0.87088 0.87320 0.99790 0.99405 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.44 71.24 0.67 -0.96 16 2 C -0.14 -3.29 5.90 -19.72 -0.12 -3.41 16 3 C -0.07 -1.64 9.69 22.23 0.22 -1.42 16 4 C -0.19 -5.62 9.29 22.41 0.21 -5.41 16 5 C 0.18 5.83 6.62 38.13 0.25 6.08 16 6 N -0.57 -16.21 3.16 -646.80 -2.04 -18.25 16 7 C 0.07 1.55 6.48 86.65 0.56 2.11 16 8 C 0.10 1.25 8.06 86.65 0.70 1.95 16 9 N -0.72 -12.64 6.37 -477.35 -3.04 -15.68 16 10 C 0.69 19.19 8.52 179.57 1.53 20.72 16 11 O -0.61 -20.89 14.75 -3.98 -0.06 -20.95 16 12 C -0.19 -6.38 8.23 22.51 0.19 -6.19 16 13 C 0.16 4.80 6.43 38.14 0.25 5.04 16 14 N -0.65 -17.80 4.96 -303.55 -1.51 -19.30 16 15 C 0.51 18.59 7.72 87.66 0.68 19.27 16 16 O -0.56 -25.06 12.90 -3.06 -0.04 -25.10 16 17 C -0.12 -4.33 5.64 29.85 0.17 -4.16 16 18 C 0.04 2.28 4.26 29.85 0.13 2.41 16 19 C -0.54 -29.71 9.11 25.60 0.23 -29.47 16 20 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 21 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 22 N -0.94 -57.54 13.29 21.45 0.28 -57.26 16 23 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.07 0.99 6.99 -2.39 -0.02 0.97 16 30 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.14 4.62 5.26 -2.91 -0.02 4.61 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.44 5.51 8.96 -92.70 -0.83 4.68 16 37 H 0.14 5.21 4.75 -2.91 -0.01 5.20 16 38 H 0.43 8.09 7.42 -92.71 -0.69 7.40 16 39 H 0.11 3.51 8.14 -2.39 -0.02 3.50 16 40 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 41 H -0.02 -0.98 8.10 -2.38 -0.02 -1.00 16 42 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 43 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -82.31 355.88 1.29 -81.02 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.45 Total: 23.67 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.12 Total: 6.79 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -6.30 Total: -110.49 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.10 Total: -46.05 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -82.31 1.29 -81.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.505 kcal (2) G-P(sol) polarization free energy of solvation -82.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds