Wall clock time and date at job start Tue Mar 31 2020 11:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 117.00162 * 2 1 4 4 C 1.38546 * 119.99433 * 359.97438 * 3 2 1 5 5 C 1.39227 * 119.81941 * 179.97438 * 4 3 2 6 6 C 1.48430 * 120.09239 * 180.02562 * 5 4 3 7 7 N 1.30752 * 126.41433 * 359.97438 * 6 5 4 8 8 O 1.21293 * 110.10217 * 180.02562 * 7 6 5 9 9 C 1.33668 * 110.02320 * 0.02562 * 8 7 6 10 10 C 1.50702 * 126.43996 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47050 * 165.03779 * 10 9 8 12 12 N 1.46900 * 109.47014 * 45.03951 * 10 9 8 13 13 C 1.52999 * 109.47288 * 285.03938 * 10 9 8 14 14 C 1.52993 * 109.47029 * 185.00030 * 13 10 9 15 15 C 1.50705 * 109.46934 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99882 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00122 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99819 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99836 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47248 * 60.00607 * 19 17 15 21 21 H 1.48504 * 109.46675 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47379 * 300.00164 * 19 17 15 23 23 N 1.30984 * 107.12374 * 359.97438 * 9 8 7 24 24 C 1.39369 * 119.81551 * 0.28242 * 5 4 3 25 25 C 1.38029 * 119.98754 * 359.43995 * 24 5 4 26 26 C 1.38254 * 120.17775 * 0.53716 * 25 24 5 27 27 C 1.50702 * 119.90169 * 179.74045 * 26 25 24 28 28 H 1.08993 * 109.47128 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46881 * 59.99975 * 1 2 3 30 30 H 1.08996 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.09239 * 359.97438 * 4 3 2 32 32 H 1.00897 * 110.99694 * 176.04545 * 12 10 9 33 33 H 1.00896 * 110.99886 * 299.99984 * 12 10 9 34 34 H 1.08999 * 109.46702 * 304.99839 * 13 10 9 35 35 H 1.09004 * 109.47020 * 64.99747 * 13 10 9 36 36 H 1.08999 * 109.47223 * 299.99490 * 14 13 10 37 37 H 1.09004 * 109.47451 * 59.99980 * 14 13 10 38 38 H 0.96998 * 120.00296 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.00730 * 179.72064 * 24 5 4 40 40 H 1.08000 * 119.90891 * 180.27576 * 25 24 5 41 41 H 1.08996 * 109.46993 * 270.01982 * 27 26 25 42 42 H 1.08997 * 109.47158 * 30.02402 * 27 26 25 43 43 H 1.09006 * 109.46758 * 150.02231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3728 -0.0005 5 6 1.9273 3.6114 0.0000 6 6 1.1247 4.8600 0.0000 7 7 -0.1801 4.9440 -0.0009 8 8 -0.5229 6.1075 -0.0011 9 6 0.5524 6.9015 -0.0009 10 6 0.5523 8.4085 -0.0016 11 1 1.5450 8.7720 0.2642 12 7 -0.4269 8.8985 0.9777 13 6 0.1788 8.9179 -1.3951 14 6 0.2997 10.4427 -1.4300 15 6 -0.0676 10.9443 -2.8028 16 1 -0.3586 10.2455 -3.5731 17 6 -0.0332 12.2956 -3.0751 18 7 0.3207 13.1465 -2.1369 19 14 -0.4892 12.9174 -4.7765 20 1 -1.8866 12.5240 -5.0892 21 1 -0.3717 14.3974 -4.8104 22 1 0.4287 12.3252 -5.7824 23 7 1.6062 6.1236 0.0001 24 6 3.3195 3.6756 -0.0049 25 6 4.0637 2.5131 0.0015 26 6 3.4319 1.2834 0.0014 27 6 4.2506 0.0181 0.0025 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2128 2.3180 -0.0014 32 1 -0.4005 9.9051 1.0427 33 1 -1.3558 8.5749 0.7532 34 1 0.8524 8.4830 -2.1334 35 1 -0.8470 8.6294 -1.6245 36 1 -0.3739 10.8776 -0.6916 37 1 1.3255 10.7312 -1.2006 38 1 0.3453 14.0970 -2.3285 39 1 3.8160 4.6347 -0.0090 40 1 5.1425 2.5644 0.0022 41 1 4.4490 -0.2870 -1.0249 42 1 5.1946 0.1966 0.5172 43 1 3.7002 -0.7703 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822728893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:10 Heat of formation + Delta-G solvation = 38.644422 kcal Electronic energy + Delta-G solvation = -25211.337661 eV Core-core repulsion = 21452.553345 eV Total energy + Delta-G solvation = -3758.784316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.42561 -40.54242 -37.89925 -36.88730 -35.71397 -33.52206 -32.97513 -31.52373 -30.46178 -30.08558 -27.95477 -27.41843 -26.65644 -24.39017 -23.90574 -22.62333 -21.92293 -21.11808 -20.18553 -18.35997 -17.91175 -17.11559 -16.71286 -16.37529 -16.10616 -15.87093 -15.78187 -15.06478 -14.57527 -14.33971 -14.17529 -13.88112 -13.73762 -13.53337 -13.34804 -12.76993 -12.73121 -12.55111 -12.34681 -12.23756 -11.91496 -11.83658 -11.66655 -11.33724 -11.26239 -11.13272 -10.99108 -10.91488 -10.68256 -10.19504 -10.05686 -9.63983 -9.32555 -8.99010 -8.57121 -8.46321 -8.34421 -6.12401 -4.15715 0.51044 1.12874 1.41572 2.43062 2.91508 2.93557 3.27008 3.31950 3.34289 3.41289 3.53466 3.94464 4.36676 4.49073 4.51062 4.74351 4.83940 4.84898 4.91909 4.98594 5.13623 5.16841 5.24011 5.26008 5.37242 5.38547 5.41513 5.43491 5.53385 5.66185 5.85063 5.92859 6.03377 6.18759 6.23218 6.27441 6.38852 6.42255 6.74846 7.02176 7.17207 7.42001 7.54261 7.59906 7.84035 8.21206 8.25263 8.89394 9.49437 10.98484 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.002254 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.213158 B =12421.571192 C =12623.847907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.171 4.171 5 C 0.018 3.982 6 C 0.205 3.795 7 N -0.384 5.384 8 O 0.083 5.917 9 C 0.221 3.779 10 C 0.180 3.820 11 H 0.124 0.876 12 N -0.840 5.840 13 C -0.143 4.143 14 C 0.026 3.974 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 N -0.478 5.478 24 C -0.106 4.106 25 C -0.087 4.087 26 C -0.102 4.102 27 C -0.106 4.106 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.367 0.633 33 H 0.344 0.656 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -23.835 6.555 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.077 3.923 4 C -0.192 4.192 5 C 0.016 3.984 6 C -0.064 4.064 7 N -0.091 5.091 8 O 0.023 5.977 9 C 0.000 4.000 10 C 0.066 3.934 11 H 0.142 0.858 12 N -0.373 5.373 13 C -0.183 4.183 14 C -0.011 4.011 15 C -0.564 4.564 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.211 5.211 24 C -0.126 4.126 25 C -0.105 4.105 26 C -0.103 4.103 27 C -0.163 4.163 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.184 0.816 33 H 0.157 0.843 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.089 -25.010 7.145 26.330 hybrid contribution -1.113 1.321 -1.813 2.504 sum 2.976 -23.689 5.332 24.463 Atomic orbital electron populations 1.23099 0.78180 1.04028 1.01734 1.86055 1.21455 1.26276 1.88833 1.18574 0.91654 0.83970 0.98132 1.21186 1.00590 0.90932 1.06458 1.17056 0.91980 0.87044 1.02272 1.23824 0.87657 0.93037 1.01930 1.74812 1.14947 0.97893 1.21447 1.85242 1.35952 1.11095 1.65380 1.29077 0.79878 0.98427 0.92619 1.20268 1.00130 0.78533 0.94479 0.85797 1.58976 1.09780 1.18613 1.49966 1.22546 1.01252 1.01554 0.92978 1.19099 0.97717 0.86620 0.97711 1.21100 1.46297 0.92039 0.96942 0.92694 1.24998 0.95114 0.96990 0.97127 1.69926 1.47669 1.02593 1.32905 0.86628 0.79077 0.77669 0.84484 1.20201 1.21187 1.20194 1.71969 1.28599 0.99288 1.21229 1.21169 0.91908 0.99630 0.99890 1.20853 1.00169 0.90404 0.99042 1.19429 0.90522 0.96514 1.03874 1.20645 0.98816 0.94298 1.02505 0.92499 0.92471 0.88030 0.84581 0.81571 0.84326 0.91931 0.92173 0.96168 0.95955 0.92744 0.84222 0.84438 0.91116 0.91392 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.14 9.53 -19.45 -0.19 -3.33 16 3 C 0.12 1.37 6.65 -39.27 -0.26 1.10 16 4 C -0.17 -2.12 8.68 -39.10 -0.34 -2.46 16 5 C 0.02 0.26 5.87 -104.91 -0.62 -0.36 16 6 C 0.21 3.33 7.80 -156.12 -1.22 2.11 16 7 N -0.38 -6.32 11.85 30.97 0.37 -5.96 16 8 O 0.08 1.35 11.27 18.04 0.20 1.56 16 9 C 0.22 3.63 7.30 -12.98 -0.09 3.53 16 10 C 0.18 2.86 3.35 -68.86 -0.23 2.63 16 11 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 12 N -0.84 -12.15 9.17 -5.65 -0.05 -12.20 16 13 C -0.14 -2.67 4.78 -26.73 -0.13 -2.79 16 14 C 0.03 0.59 4.74 -27.88 -0.13 0.46 16 15 C -0.53 -14.04 9.11 -34.44 -0.31 -14.36 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 19 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 N -0.48 -8.06 11.26 -9.88 -0.11 -8.17 16 24 C -0.11 -1.28 9.70 -39.24 -0.38 -1.66 16 25 C -0.09 -0.85 9.68 -39.65 -0.38 -1.23 16 26 C -0.10 -1.03 5.90 -104.42 -0.62 -1.64 16 27 C -0.11 -0.79 9.78 36.01 0.35 -0.44 16 28 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 1.61 6.10 -52.48 -0.32 1.29 16 32 H 0.37 5.35 7.55 -39.29 -0.30 5.05 16 33 H 0.34 4.62 8.97 -39.29 -0.35 4.27 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.14 1.66 7.87 -52.49 -0.41 1.25 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.07 0.54 7.52 -51.93 -0.39 0.15 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -30.41 367.08 -7.84 -38.25 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.85 Total: 5.46 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.47 Total: -12.41 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.94 Total: -51.01 kcal Atomic # 8 Polarization: -1.79 SS G_CDS: 0.02 Total: -1.77 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.41 -7.84 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822728893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.893 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds