Wall clock time and date at job start Tue Mar 31 2020 11:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 117.00162 * 2 1 4 4 C 1.38546 * 119.99433 * 359.97438 * 3 2 1 5 5 C 1.39227 * 119.81941 * 179.97438 * 4 3 2 6 6 C 1.48430 * 120.09239 * 180.02562 * 5 4 3 7 7 N 1.30752 * 126.41433 * 359.97438 * 6 5 4 8 8 O 1.21293 * 110.10217 * 180.02562 * 7 6 5 9 9 C 1.33668 * 110.02320 * 0.02562 * 8 7 6 10 10 C 1.50702 * 126.43996 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47050 * 165.03779 * 10 9 8 12 12 N 1.46900 * 109.47014 * 45.03951 * 10 9 8 13 13 C 1.52999 * 109.47288 * 285.03938 * 10 9 8 14 14 C 1.52993 * 109.47029 * 185.00030 * 13 10 9 15 15 C 1.50705 * 109.46934 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99882 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00122 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99819 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99836 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47248 * 60.00607 * 19 17 15 21 21 H 1.48504 * 109.46675 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47379 * 300.00164 * 19 17 15 23 23 N 1.30984 * 107.12374 * 359.97438 * 9 8 7 24 24 C 1.39369 * 119.81551 * 0.28242 * 5 4 3 25 25 C 1.38029 * 119.98754 * 359.43995 * 24 5 4 26 26 C 1.38254 * 120.17775 * 0.53716 * 25 24 5 27 27 C 1.50702 * 119.90169 * 179.74045 * 26 25 24 28 28 H 1.08993 * 109.47128 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46881 * 59.99975 * 1 2 3 30 30 H 1.08996 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.09239 * 359.97438 * 4 3 2 32 32 H 1.00897 * 110.99694 * 176.04545 * 12 10 9 33 33 H 1.00896 * 110.99886 * 299.99984 * 12 10 9 34 34 H 1.08999 * 109.46702 * 304.99839 * 13 10 9 35 35 H 1.09004 * 109.47020 * 64.99747 * 13 10 9 36 36 H 1.08999 * 109.47223 * 299.99490 * 14 13 10 37 37 H 1.09004 * 109.47451 * 59.99980 * 14 13 10 38 38 H 0.96998 * 120.00296 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.00730 * 179.72064 * 24 5 4 40 40 H 1.08000 * 119.90891 * 180.27576 * 25 24 5 41 41 H 1.08996 * 109.46993 * 270.01982 * 27 26 25 42 42 H 1.08997 * 109.47158 * 30.02402 * 27 26 25 43 43 H 1.09006 * 109.46758 * 150.02231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3728 -0.0005 5 6 1.9273 3.6114 0.0000 6 6 1.1247 4.8600 0.0000 7 7 -0.1801 4.9440 -0.0009 8 8 -0.5229 6.1075 -0.0011 9 6 0.5524 6.9015 -0.0009 10 6 0.5523 8.4085 -0.0016 11 1 1.5450 8.7720 0.2642 12 7 -0.4269 8.8985 0.9777 13 6 0.1788 8.9179 -1.3951 14 6 0.2997 10.4427 -1.4300 15 6 -0.0676 10.9443 -2.8028 16 1 -0.3586 10.2455 -3.5731 17 6 -0.0332 12.2956 -3.0751 18 7 0.3207 13.1465 -2.1369 19 14 -0.4892 12.9174 -4.7765 20 1 -1.8866 12.5240 -5.0892 21 1 -0.3717 14.3974 -4.8104 22 1 0.4287 12.3252 -5.7824 23 7 1.6062 6.1236 0.0001 24 6 3.3195 3.6756 -0.0049 25 6 4.0637 2.5131 0.0015 26 6 3.4319 1.2834 0.0014 27 6 4.2506 0.0181 0.0025 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2128 2.3180 -0.0014 32 1 -0.4005 9.9051 1.0427 33 1 -1.3558 8.5749 0.7532 34 1 0.8524 8.4830 -2.1334 35 1 -0.8470 8.6294 -1.6245 36 1 -0.3739 10.8776 -0.6916 37 1 1.3255 10.7312 -1.2006 38 1 0.3453 14.0970 -2.3285 39 1 3.8160 4.6347 -0.0090 40 1 5.1425 2.5644 0.0022 41 1 4.4490 -0.2870 -1.0249 42 1 5.1946 0.1966 0.5172 43 1 3.7002 -0.7703 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822728893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:09 Heat of formation + Delta-G solvation = 18.531486 kcal Electronic energy + Delta-G solvation = -25212.209823 eV Core-core repulsion = 21452.553345 eV Total energy + Delta-G solvation = -3759.656478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -46.69393 -41.34484 -38.72415 -38.31589 -36.89278 -35.16378 -34.25061 -32.71923 -31.75310 -31.30106 -28.61505 -28.32394 -28.15606 -25.99794 -25.10536 -23.70270 -22.90357 -22.44354 -21.49904 -19.40279 -19.20651 -18.61744 -18.03519 -17.56916 -17.12980 -16.81555 -16.64104 -16.47227 -16.05548 -15.67580 -15.11881 -14.94974 -14.85857 -14.55578 -14.43404 -14.15293 -13.99289 -13.68306 -13.42743 -13.24653 -13.01201 -12.96087 -12.82131 -12.69762 -12.54351 -12.45366 -12.20660 -12.14384 -12.07668 -11.81412 -11.57995 -11.37122 -11.18970 -10.54427 -9.90306 -9.83437 -9.20624 -8.20667 -6.30212 -0.51208 0.18412 0.28833 1.28181 1.41386 1.42220 1.50173 1.63228 2.17153 2.31510 2.41075 2.63094 2.74799 3.13535 3.51801 3.66909 3.69382 3.93026 3.98647 4.05378 4.14302 4.16123 4.28805 4.30801 4.39265 4.48316 4.58530 4.66910 4.69095 4.73418 4.76540 4.83654 4.86667 5.04722 5.11595 5.25077 5.35092 5.39964 5.47160 5.64906 5.65833 5.80859 5.93844 6.21437 6.25001 6.40393 6.84317 6.94793 7.38539 8.89856 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.002254 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.213158 B =12421.571192 C =12623.847907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.178 4.178 5 C -0.013 4.013 6 C 0.205 3.795 7 N -0.395 5.395 8 O 0.080 5.920 9 C 0.219 3.781 10 C 0.194 3.806 11 H 0.125 0.875 12 N -0.833 5.833 13 C -0.127 4.127 14 C 0.031 3.969 15 C -0.546 4.546 16 H 0.054 0.946 17 C 0.007 3.993 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.489 5.489 24 C -0.113 4.113 25 C -0.079 4.079 26 C -0.100 4.100 27 C -0.104 4.104 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.368 0.632 33 H 0.352 0.648 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.137 0.863 40 H 0.170 0.830 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -25.572 6.218 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.070 3.930 4 C -0.198 4.198 5 C -0.015 4.015 6 C -0.065 4.065 7 N -0.104 5.104 8 O 0.022 5.978 9 C -0.002 4.002 10 C 0.080 3.920 11 H 0.143 0.857 12 N -0.367 5.367 13 C -0.168 4.168 14 C -0.006 4.006 15 C -0.584 4.584 16 H 0.072 0.928 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.197 1.197 23 N -0.222 5.222 24 C -0.133 4.133 25 C -0.097 4.097 26 C -0.101 4.101 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.185 0.815 33 H 0.166 0.834 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.188 0.812 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.657 -26.756 6.811 27.999 hybrid contribution -1.270 1.739 -1.682 2.732 sum 3.387 -25.017 5.130 25.761 Atomic orbital electron populations 1.23327 0.76837 1.05817 1.01678 1.86053 1.22862 1.25603 1.88627 1.18764 0.92333 0.83957 0.97985 1.21203 1.00712 0.91017 1.06901 1.17248 0.92722 0.86603 1.04935 1.24287 0.87716 0.93596 1.00869 1.74792 1.15302 0.97825 1.22436 1.85223 1.35866 1.11145 1.65565 1.29019 0.80040 0.98387 0.92780 1.19996 1.00548 0.78463 0.93018 0.85709 1.58961 1.10049 1.18610 1.49065 1.22290 1.01391 0.98462 0.94643 1.18960 0.96105 0.89484 0.96082 1.21561 1.45970 0.92408 0.98439 0.92797 1.25812 0.95162 0.97363 1.00800 1.70031 1.48751 1.02827 1.34766 0.85636 0.79046 0.77119 0.80068 1.19393 1.20816 1.19718 1.71962 1.28900 0.99798 1.21584 1.21282 0.91352 1.00538 1.00118 1.21190 1.01619 0.89370 0.97521 1.19866 0.90416 0.97794 1.02056 1.20717 0.99221 0.92750 1.03385 0.92490 0.92624 0.85343 0.84777 0.81499 0.83450 0.92723 0.91716 0.96532 0.98027 0.92687 0.84502 0.81210 0.90135 0.89300 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.32 -5.95 9.53 -92.52 -0.88 -6.83 16 3 C 0.12 2.45 6.65 22.47 0.15 2.60 16 4 C -0.18 -4.38 8.68 22.58 0.20 -4.18 16 5 C -0.01 -0.37 5.87 -20.05 -0.12 -0.48 16 6 C 0.21 6.70 7.80 137.30 1.07 7.77 16 7 N -0.39 -13.12 11.85 -59.14 -0.70 -13.83 16 8 O 0.08 2.60 11.27 74.62 0.84 3.45 16 9 C 0.22 7.18 7.30 88.36 0.65 7.82 16 10 C 0.19 6.16 3.35 44.17 0.15 6.31 16 11 H 0.13 3.98 8.14 -2.39 -0.02 3.97 16 12 N -0.83 -23.73 9.17 -171.80 -1.58 -25.31 16 13 C -0.13 -4.76 4.78 30.59 0.15 -4.62 16 14 C 0.03 1.45 4.74 29.85 0.14 1.59 16 15 C -0.55 -29.30 9.11 25.60 0.23 -29.07 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 17 C 0.01 0.41 5.46 84.66 0.46 0.87 16 18 N -0.92 -53.06 13.29 21.45 0.28 -52.78 16 19 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 N -0.49 -16.58 11.26 -302.50 -3.41 -19.99 16 24 C -0.11 -2.64 9.70 22.49 0.22 -2.43 16 25 C -0.08 -1.39 9.68 22.22 0.22 -1.17 16 26 C -0.10 -1.80 5.90 -19.73 -0.12 -1.92 16 27 C -0.10 -1.25 9.78 71.24 0.70 -0.55 16 28 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 29 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 30 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.13 3.22 6.10 -2.91 -0.02 3.20 16 32 H 0.37 10.62 7.55 -89.70 -0.68 9.94 16 33 H 0.35 9.21 8.97 -89.70 -0.80 8.41 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.02 0.78 6.87 -2.39 -0.02 0.76 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.14 3.21 7.87 -2.91 -0.02 3.18 16 40 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 43 H 0.07 0.89 7.52 -2.38 -0.02 0.87 16 Total: -1.00 -64.77 367.08 1.36 -63.41 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.43 Total: 23.09 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 5.20 Total: -16.11 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -5.40 Total: -111.90 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.04 Total: -3.38 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.77 1.36 -63.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822728893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.938 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds