Wall clock time and date at job start Tue Mar 31 2020 11:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35823 * 117.00274 * 2 1 4 4 C 1.38889 * 119.93852 * 0.02562 * 3 2 1 5 5 C 1.37843 * 120.06797 * 179.97438 * 4 3 2 6 6 C 1.39417 * 119.93631 * 0.02562 * 5 4 3 7 7 C 1.48336 * 120.06632 * 179.97438 * 6 5 4 8 8 N 1.30804 * 126.42197 * 179.67881 * 7 6 5 9 9 O 1.21287 * 110.09372 * 180.26457 * 8 7 6 10 10 C 1.33668 * 110.03479 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.43415 * 179.97438 * 10 9 8 12 12 H 1.09009 * 109.47334 * 165.02135 * 11 10 9 13 13 N 1.46893 * 109.47623 * 45.02166 * 11 10 9 14 14 C 1.53004 * 109.46924 * 285.01613 * 11 10 9 15 15 C 1.53001 * 109.47106 * 185.00107 * 14 11 10 16 16 C 1.50700 * 109.46973 * 180.02562 * 15 14 11 17 17 H 1.07999 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99940 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00004 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46758 * 120.00459 * 20 18 16 23 23 H 1.48500 * 109.47156 * 240.00259 * 20 18 16 24 24 N 1.30971 * 107.13386 * 359.97438 * 10 9 8 25 25 C 1.39386 * 119.87074 * 0.24973 * 6 5 4 26 26 C 1.37892 * 119.93541 * 359.51632 * 25 6 5 27 27 C 1.50697 * 119.96968 * 180.25588 * 26 25 6 28 28 H 1.09000 * 109.47006 * 300.00116 * 1 2 3 29 29 H 1.09002 * 109.47040 * 59.99686 * 1 2 3 30 30 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.96425 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.03663 * 180.02562 * 5 4 3 33 33 H 1.00902 * 110.99712 * 300.00211 * 13 11 10 34 34 H 1.00896 * 111.00128 * 63.95141 * 13 11 10 35 35 H 1.08999 * 109.47546 * 305.00469 * 14 11 10 36 36 H 1.08995 * 109.46604 * 65.00392 * 14 11 10 37 37 H 1.08999 * 109.47214 * 300.00566 * 15 14 11 38 38 H 1.08997 * 109.47099 * 60.00082 * 15 14 11 39 39 H 0.96994 * 119.99929 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.02676 * 179.75080 * 25 6 5 41 41 H 1.09004 * 109.46814 * 270.21298 * 27 26 25 42 42 H 1.08997 * 109.47152 * 30.20576 * 27 26 25 43 43 H 1.08999 * 109.47530 * 150.21152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2881 2.3742 0.0005 5 6 1.9112 3.6038 0.0011 6 6 3.3033 3.6783 0.0005 7 6 3.9768 4.9999 0.0005 8 7 5.2672 5.2140 0.0060 9 8 5.4919 6.4059 0.0095 10 6 4.3426 7.0885 0.0071 11 6 4.1923 8.5879 0.0106 12 1 3.1692 8.8512 -0.2580 13 7 5.1210 9.1755 -0.9641 14 6 4.5083 9.1289 1.4065 15 6 4.2357 10.6340 1.4439 16 6 4.5475 11.1669 2.8187 17 1 4.9048 10.4990 3.5885 18 6 4.3776 12.5073 3.0933 19 7 3.9430 13.3208 2.1557 20 14 4.7634 13.1678 4.7975 21 1 5.2324 12.0569 5.6644 22 1 5.8258 14.2007 4.6992 23 1 3.5394 13.7707 5.3835 24 7 3.3718 6.2095 0.0012 25 6 4.0611 2.5084 -0.0058 26 6 3.4323 1.2812 -0.0015 27 6 4.2509 0.0160 -0.0025 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2096 2.3159 0.0014 32 1 1.3215 4.5086 0.0019 33 1 6.0768 8.9457 -0.7368 34 1 4.8924 8.8840 -1.9026 35 1 3.8790 8.6273 2.1417 36 1 5.5569 8.9437 1.6390 37 1 4.8649 11.1356 0.7088 38 1 3.1870 10.8192 1.2113 39 1 3.8232 14.2637 2.3490 40 1 5.1398 2.5632 -0.0103 41 1 4.4476 -0.2887 -1.0305 42 1 5.1959 0.1941 0.5107 43 1 3.7014 -0.7728 0.5114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822785706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:18 Heat of formation + Delta-G solvation = 40.534376 kcal Electronic energy + Delta-G solvation = -25087.622711 eV Core-core repulsion = 21328.920350 eV Total energy + Delta-G solvation = -3758.702361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.44820 -40.63040 -38.05208 -36.74564 -35.58578 -33.26719 -33.06399 -32.06362 -30.32315 -30.10324 -28.05987 -27.19240 -26.47073 -24.53166 -24.13366 -22.70731 -21.77650 -20.94033 -19.95702 -18.37937 -17.94964 -17.58377 -16.70890 -16.22138 -16.20395 -15.97954 -15.82576 -14.98464 -14.72479 -14.37468 -14.16110 -14.05599 -13.94723 -13.46977 -13.00026 -12.75305 -12.52871 -12.47669 -12.44288 -12.13277 -12.03139 -11.95194 -11.75543 -11.30103 -11.25285 -10.95901 -10.92328 -10.74160 -10.56550 -10.14306 -9.85501 -9.41728 -9.20294 -9.02750 -8.84365 -8.32435 -8.28836 -5.95773 -3.97768 0.55262 0.97560 1.35818 2.38597 2.82750 2.88352 3.33728 3.41352 3.44622 3.46180 3.48459 3.95566 4.38244 4.43935 4.49529 4.64331 4.71199 4.73051 4.85549 4.93387 4.99731 5.09500 5.20658 5.24320 5.37829 5.38805 5.41029 5.51877 5.57816 5.74005 5.84094 5.89115 5.96374 6.09958 6.20109 6.32518 6.39598 6.56281 6.93575 6.99677 7.15383 7.50271 7.74218 7.91587 8.08416 8.18608 8.45267 9.09744 9.65600 11.15179 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.002210 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.485710 B =12665.970144 C =13089.316800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.142 3.858 4 C -0.208 4.208 5 C -0.038 4.038 6 C -0.051 4.051 7 C 0.212 3.788 8 N -0.386 5.386 9 O 0.076 5.924 10 C 0.165 3.835 11 C 0.185 3.815 12 H 0.125 0.875 13 N -0.812 5.812 14 C -0.102 4.102 15 C 0.032 3.968 16 C -0.522 4.522 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 N -0.481 5.481 25 C -0.047 4.047 26 C -0.121 4.121 27 C -0.103 4.103 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.349 0.651 34 H 0.340 0.660 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.137 0.863 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -26.272 -8.015 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.096 3.904 4 C -0.226 4.226 5 C -0.058 4.058 6 C -0.054 4.054 7 C -0.058 4.058 8 N -0.094 5.094 9 O 0.018 5.982 10 C -0.058 4.058 11 C 0.070 3.930 12 H 0.143 0.857 13 N -0.341 5.341 14 C -0.141 4.141 15 C -0.006 4.006 16 C -0.560 4.560 17 H 0.071 0.929 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.211 1.211 24 N -0.214 5.214 25 C -0.067 4.067 26 C -0.122 4.122 27 C -0.160 4.160 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.155 0.845 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.467 -26.321 -7.812 27.817 hybrid contribution 0.129 -0.203 0.768 0.805 sum -4.338 -26.524 -7.043 27.784 Atomic orbital electron populations 1.23121 0.78093 1.04143 1.01695 1.86047 1.21574 1.26684 1.88180 1.18992 0.91764 0.84319 0.95333 1.21169 1.00380 0.91661 1.09408 1.21008 0.92862 0.97981 0.93962 1.17220 0.92712 0.86997 1.08427 1.23854 0.86563 0.94095 1.01271 1.74832 1.17650 0.94991 1.21940 1.85233 1.35004 1.12278 1.65716 1.31185 0.79399 1.01535 0.93677 1.20877 1.00068 0.74414 0.97623 0.85717 1.58818 1.06841 1.63640 1.04759 1.21852 1.01057 1.01529 0.89658 1.19024 0.97527 0.86724 0.97286 1.21279 1.44202 0.93394 0.97139 0.92857 1.24988 0.95397 0.97141 0.96817 1.69978 1.46388 1.04157 1.32588 0.86585 0.77947 0.78954 0.84787 1.19852 1.21041 1.21089 1.72005 1.30546 0.97859 1.20948 1.20892 1.00204 0.89763 0.95840 1.19115 0.90602 0.95917 1.06535 1.20604 0.98864 0.94051 1.02484 0.92353 0.92392 0.88061 0.84598 0.84197 0.83645 0.84694 0.92296 0.92357 0.94423 0.96571 0.93112 0.84499 0.91231 0.91429 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.73 9.52 -19.19 -0.18 -2.92 16 3 C 0.14 1.43 6.66 -39.12 -0.26 1.17 16 4 C -0.21 -2.01 9.02 -39.48 -0.36 -2.37 16 5 C -0.04 -0.45 9.69 -39.29 -0.38 -0.83 16 6 C -0.05 -0.69 5.88 -104.88 -0.62 -1.30 16 7 C 0.21 3.30 7.80 -156.10 -1.22 2.09 16 8 N -0.39 -6.14 11.85 30.98 0.37 -5.78 16 9 O 0.08 1.18 11.27 18.04 0.20 1.39 16 10 C 0.17 2.58 7.29 -12.99 -0.09 2.48 16 11 C 0.19 2.92 3.29 -68.87 -0.23 2.70 16 12 H 0.13 1.97 8.14 -51.92 -0.42 1.55 16 13 N -0.81 -11.48 8.67 -5.65 -0.05 -11.52 16 14 C -0.10 -1.98 4.78 -26.73 -0.13 -2.11 16 15 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 16 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 N -0.48 -7.77 11.25 -9.88 -0.11 -7.89 16 25 C -0.05 -0.55 9.34 -39.28 -0.37 -0.92 16 26 C -0.12 -1.26 5.89 -104.53 -0.62 -1.87 16 27 C -0.10 -0.83 9.78 36.00 0.35 -0.48 16 28 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 0.96 6.28 -52.49 -0.33 0.63 16 32 H 0.14 1.60 7.87 -52.49 -0.41 1.18 16 33 H 0.35 4.57 8.97 -39.29 -0.35 4.22 16 34 H 0.34 3.95 9.06 -39.29 -0.36 3.59 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.14 1.53 7.86 -52.48 -0.41 1.12 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.07 0.56 7.52 -51.93 -0.39 0.17 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -32.21 369.00 -7.91 -40.12 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.95 Total: 3.19 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.47 Total: -12.95 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.94 Total: -50.96 kcal Atomic # 8 Polarization: -1.55 SS G_CDS: 0.02 Total: -1.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.21 -7.91 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822785706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.656 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds