Wall clock time and date at job start Tue Mar 31 2020 11:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35823 * 117.00274 * 2 1 4 4 C 1.38889 * 119.93852 * 0.02562 * 3 2 1 5 5 C 1.37843 * 120.06797 * 179.97438 * 4 3 2 6 6 C 1.39417 * 119.93631 * 0.02562 * 5 4 3 7 7 C 1.48336 * 120.06632 * 179.97438 * 6 5 4 8 8 N 1.30804 * 126.42197 * 179.67881 * 7 6 5 9 9 O 1.21287 * 110.09372 * 180.26457 * 8 7 6 10 10 C 1.33668 * 110.03479 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.43415 * 179.97438 * 10 9 8 12 12 H 1.09009 * 109.47334 * 165.02135 * 11 10 9 13 13 N 1.46893 * 109.47623 * 45.02166 * 11 10 9 14 14 C 1.53004 * 109.46924 * 285.01613 * 11 10 9 15 15 C 1.53001 * 109.47106 * 185.00107 * 14 11 10 16 16 C 1.50700 * 109.46973 * 180.02562 * 15 14 11 17 17 H 1.07999 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99940 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00004 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46758 * 120.00459 * 20 18 16 23 23 H 1.48500 * 109.47156 * 240.00259 * 20 18 16 24 24 N 1.30971 * 107.13386 * 359.97438 * 10 9 8 25 25 C 1.39386 * 119.87074 * 0.24973 * 6 5 4 26 26 C 1.37892 * 119.93541 * 359.51632 * 25 6 5 27 27 C 1.50697 * 119.96968 * 180.25588 * 26 25 6 28 28 H 1.09000 * 109.47006 * 300.00116 * 1 2 3 29 29 H 1.09002 * 109.47040 * 59.99686 * 1 2 3 30 30 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.96425 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.03663 * 180.02562 * 5 4 3 33 33 H 1.00902 * 110.99712 * 300.00211 * 13 11 10 34 34 H 1.00896 * 111.00128 * 63.95141 * 13 11 10 35 35 H 1.08999 * 109.47546 * 305.00469 * 14 11 10 36 36 H 1.08995 * 109.46604 * 65.00392 * 14 11 10 37 37 H 1.08999 * 109.47214 * 300.00566 * 15 14 11 38 38 H 1.08997 * 109.47099 * 60.00082 * 15 14 11 39 39 H 0.96994 * 119.99929 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.02676 * 179.75080 * 25 6 5 41 41 H 1.09004 * 109.46814 * 270.21298 * 27 26 25 42 42 H 1.08997 * 109.47152 * 30.20576 * 27 26 25 43 43 H 1.08999 * 109.47530 * 150.21152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2881 2.3742 0.0005 5 6 1.9112 3.6038 0.0011 6 6 3.3033 3.6783 0.0005 7 6 3.9768 4.9999 0.0005 8 7 5.2672 5.2140 0.0060 9 8 5.4919 6.4059 0.0095 10 6 4.3426 7.0885 0.0071 11 6 4.1923 8.5879 0.0106 12 1 3.1692 8.8512 -0.2580 13 7 5.1210 9.1755 -0.9641 14 6 4.5083 9.1289 1.4065 15 6 4.2357 10.6340 1.4439 16 6 4.5475 11.1669 2.8187 17 1 4.9048 10.4990 3.5885 18 6 4.3776 12.5073 3.0933 19 7 3.9430 13.3208 2.1557 20 14 4.7634 13.1678 4.7975 21 1 5.2324 12.0569 5.6644 22 1 5.8258 14.2007 4.6992 23 1 3.5394 13.7707 5.3835 24 7 3.3718 6.2095 0.0012 25 6 4.0611 2.5084 -0.0058 26 6 3.4323 1.2812 -0.0015 27 6 4.2509 0.0160 -0.0025 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2096 2.3159 0.0014 32 1 1.3215 4.5086 0.0019 33 1 6.0768 8.9457 -0.7368 34 1 4.8924 8.8840 -1.9026 35 1 3.8790 8.6273 2.1417 36 1 5.5569 8.9437 1.6390 37 1 4.8649 11.1356 0.7088 38 1 3.1870 10.8192 1.2113 39 1 3.8232 14.2637 2.3490 40 1 5.1398 2.5632 -0.0103 41 1 4.4476 -0.2887 -1.0305 42 1 5.1959 0.1941 0.5107 43 1 3.7014 -0.7728 0.5114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822785706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:16 Heat of formation + Delta-G solvation = 18.620060 kcal Electronic energy + Delta-G solvation = -25088.572987 eV Core-core repulsion = 21328.920350 eV Total energy + Delta-G solvation = -3759.652637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.66261 -41.36635 -38.82168 -38.14491 -36.74078 -35.11878 -33.98002 -33.26935 -32.03632 -31.04767 -28.56301 -28.28198 -27.80857 -25.77086 -25.56834 -23.87584 -22.67822 -22.39198 -21.27016 -19.18986 -19.08749 -18.84566 -18.27619 -17.44763 -17.23343 -16.84361 -16.78988 -16.51002 -16.04765 -15.51396 -15.49853 -14.87905 -14.61516 -14.30544 -14.24756 -14.14956 -13.89378 -13.63917 -13.54070 -13.31185 -13.02548 -12.86990 -12.81870 -12.65708 -12.52315 -12.46366 -12.30073 -12.06620 -11.84771 -11.71265 -11.54540 -11.23483 -10.95529 -10.48553 -10.02817 -10.00335 -9.16034 -8.12598 -6.21824 -0.43953 0.16490 0.20091 1.29042 1.42819 1.43781 1.55829 1.64275 2.21880 2.35975 2.46357 2.60108 2.81452 3.20951 3.51330 3.61786 3.66468 3.81981 4.00043 4.07002 4.17643 4.24260 4.36067 4.38691 4.39604 4.43717 4.61084 4.70045 4.75122 4.78512 4.79589 4.82328 4.94075 5.12745 5.15487 5.23108 5.28448 5.32201 5.55366 5.59809 5.84852 5.99253 6.00629 6.26837 6.31912 6.47132 6.96287 6.98079 7.45925 8.98762 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.002210 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.485710 B =12665.970144 C =13089.316800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.145 3.855 4 C -0.202 4.202 5 C -0.044 4.044 6 C -0.082 4.082 7 C 0.212 3.788 8 N -0.398 5.398 9 O 0.074 5.926 10 C 0.169 3.831 11 C 0.201 3.799 12 H 0.125 0.875 13 N -0.817 5.817 14 C -0.090 4.090 15 C 0.040 3.960 16 C -0.542 4.542 17 H 0.054 0.946 18 C 0.002 3.998 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.280 1.280 24 N -0.492 5.492 25 C -0.051 4.051 26 C -0.128 4.128 27 C -0.101 4.101 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.164 0.836 32 H 0.138 0.862 33 H 0.356 0.644 34 H 0.357 0.643 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.019 0.981 38 H -0.007 1.007 39 H 0.262 0.738 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -28.109 -7.631 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.098 3.902 4 C -0.221 4.221 5 C -0.064 4.064 6 C -0.084 4.084 7 C -0.058 4.058 8 N -0.108 5.108 9 O 0.018 5.982 10 C -0.055 4.055 11 C 0.086 3.914 12 H 0.143 0.857 13 N -0.348 5.348 14 C -0.129 4.129 15 C 0.002 3.998 16 C -0.580 4.580 17 H 0.073 0.927 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.783 3.217 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.206 1.206 24 N -0.225 5.225 25 C -0.071 4.071 26 C -0.129 4.129 27 C -0.158 4.158 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.181 0.819 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.154 0.846 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.963 -28.171 -7.440 29.557 hybrid contribution 0.200 0.237 0.610 0.684 sum -4.763 -27.934 -6.830 29.148 Atomic orbital electron populations 1.23451 0.76066 1.06004 1.02572 1.86053 1.23653 1.25857 1.87666 1.19131 0.91869 0.85007 0.94152 1.21412 1.01749 0.90709 1.08218 1.21072 0.92275 0.98816 0.94265 1.17409 0.93575 0.86440 1.10969 1.24293 0.86472 0.94768 1.00259 1.74815 1.18002 0.94969 1.22964 1.85216 1.34867 1.12302 1.65853 1.30981 0.79530 1.01211 0.93768 1.20463 1.00433 0.74587 0.95933 0.85686 1.58777 1.07054 1.63541 1.05455 1.21559 1.01174 0.98083 0.92051 1.18827 0.95484 0.89984 0.95471 1.21732 1.43919 0.93856 0.98478 0.92733 1.25862 0.95266 0.97583 1.00848 1.70096 1.47439 1.04533 1.34728 0.85514 0.77862 0.78368 0.79966 1.19012 1.20449 1.20569 1.72002 1.30874 0.98322 1.21319 1.20924 1.00203 0.89887 0.96077 1.19385 0.91331 0.96211 1.05938 1.20642 0.98903 0.93002 1.03234 0.91537 0.91386 0.85878 0.81902 0.84422 0.82861 0.82850 0.92719 0.91955 0.96257 0.98887 0.92919 0.84571 0.90320 0.90705 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -4.82 9.52 -91.56 -0.87 -5.69 16 3 C 0.15 2.67 6.66 22.57 0.15 2.82 16 4 C -0.20 -3.56 9.02 22.33 0.20 -3.36 16 5 C -0.04 -1.00 9.69 22.46 0.22 -0.79 16 6 C -0.08 -2.17 5.88 -20.03 -0.12 -2.29 16 7 C 0.21 6.61 7.80 137.25 1.07 7.68 16 8 N -0.40 -12.68 11.85 -59.06 -0.70 -13.38 16 9 O 0.07 2.30 11.27 74.62 0.84 3.14 16 10 C 0.17 5.23 7.29 88.36 0.64 5.87 16 11 C 0.20 6.34 3.29 44.17 0.15 6.48 16 12 H 0.13 3.96 8.14 -2.38 -0.02 3.94 16 13 N -0.82 -22.79 8.67 -171.80 -1.49 -24.28 16 14 C -0.09 -3.51 4.78 30.60 0.15 -3.37 16 15 C 0.04 2.00 4.86 29.85 0.15 2.14 16 16 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 17 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 18 C 0.00 0.13 5.46 84.65 0.46 0.60 16 19 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 20 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 N -0.49 -15.89 11.25 -302.45 -3.40 -19.30 16 25 C -0.05 -1.18 9.34 22.46 0.21 -0.97 16 26 C -0.13 -2.51 5.89 -19.80 -0.12 -2.62 16 27 C -0.10 -1.47 9.78 71.23 0.70 -0.77 16 28 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 29 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 30 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.16 1.86 6.28 -2.91 -0.02 1.84 16 32 H 0.14 3.10 7.87 -2.91 -0.02 3.08 16 33 H 0.36 9.14 8.97 -89.69 -0.80 8.33 16 34 H 0.36 8.00 9.06 -89.70 -0.81 7.19 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.02 1.03 7.75 -2.39 -0.02 1.01 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 40 H 0.14 3.04 7.86 -2.91 -0.02 3.02 16 41 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 43 H 0.08 1.04 7.52 -2.39 -0.02 1.03 16 Total: -1.00 -68.96 369.00 1.32 -67.64 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.56 Total: 18.57 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.20 Total: -17.50 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -5.31 Total: -112.49 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: -0.03 Total: -2.55 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -68.96 1.32 -67.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822785706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.256 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds