Wall clock time and date at job start Tue Mar 31 2020 11:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35834 * 116.99945 * 2 1 4 4 C 1.38887 * 119.93420 * 0.02562 * 3 2 1 5 5 C 1.37853 * 120.06185 * 180.02562 * 4 3 2 6 6 C 1.39416 * 119.93812 * 0.02562 * 5 4 3 7 7 C 1.48342 * 120.06480 * 179.97438 * 6 5 4 8 8 N 1.30804 * 126.41752 * 179.97438 * 7 6 5 9 9 O 1.21292 * 110.08432 * 180.02562 * 8 7 6 10 10 C 1.33665 * 110.03725 * 0.02562 * 9 8 7 11 11 C 1.50707 * 126.43082 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.46844 * 195.01995 * 11 10 9 13 13 N 1.46897 * 109.46776 * 315.02233 * 11 10 9 14 14 C 1.52999 * 109.46980 * 75.02382 * 11 10 9 15 15 C 1.53006 * 109.46626 * 175.00014 * 14 11 10 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 11 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 60.00274 * 20 18 16 22 22 H 1.48496 * 109.47425 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47216 * 300.00267 * 20 18 16 24 24 N 1.30970 * 107.13690 * 0.26033 * 10 9 8 25 25 C 1.39385 * 119.87124 * 0.25359 * 6 5 4 26 26 C 1.37894 * 119.93108 * 359.47511 * 25 6 5 27 27 C 1.50704 * 119.96392 * 180.25348 * 26 25 6 28 28 H 1.09003 * 109.46911 * 60.00123 * 1 2 3 29 29 H 1.09003 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47603 * 299.99617 * 1 2 3 31 31 H 1.08001 * 119.96939 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.02839 * 180.02562 * 5 4 3 33 33 H 1.00888 * 111.00369 * 60.00291 * 13 11 10 34 34 H 1.00900 * 110.99476 * 183.96192 * 13 11 10 35 35 H 1.08993 * 109.47839 * 55.00083 * 14 11 10 36 36 H 1.09000 * 109.47160 * 294.99645 * 14 11 10 37 37 H 1.09000 * 109.47050 * 299.99699 * 15 14 11 38 38 H 1.09001 * 109.46801 * 59.99811 * 15 14 11 39 39 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.03138 * 179.72540 * 25 6 5 41 41 H 1.09004 * 109.46983 * 270.27317 * 27 26 25 42 42 H 1.08997 * 109.47227 * 30.27535 * 27 26 25 43 43 H 1.08997 * 109.47262 * 150.27125 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2878 2.3742 0.0005 5 6 1.9109 3.6039 0.0000 6 6 3.3031 3.6785 -0.0016 7 6 3.9765 5.0002 -0.0028 8 7 5.2669 5.2143 -0.0038 9 8 5.4914 6.4063 -0.0041 10 6 4.3421 7.0887 -0.0026 11 6 4.1917 8.5883 -0.0029 12 1 3.1682 8.8508 0.2649 13 7 5.1191 9.1735 0.9745 14 6 4.5096 9.1324 -1.3971 15 6 4.2370 10.6376 -1.4314 16 6 4.5507 11.1737 -2.8044 17 1 4.9091 10.5076 -3.5753 18 6 4.3802 12.5146 -3.0765 19 7 3.9442 13.3258 -2.1376 20 14 4.7697 13.1793 -4.7781 21 1 3.9151 12.4978 -5.7834 22 1 4.5050 14.6401 -4.8115 23 1 6.1993 12.9285 -5.0922 24 7 3.3713 6.2097 0.0043 25 6 4.0610 2.5087 -0.0080 26 6 3.4322 1.2815 -0.0018 27 6 4.2509 0.0162 -0.0030 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 0.2094 2.3159 0.0014 32 1 1.3212 4.5086 0.0008 33 1 6.0752 8.9443 0.7480 34 1 4.9924 10.1724 1.0399 35 1 3.8814 8.6325 -2.1343 36 1 5.5586 8.9478 -1.6286 37 1 3.1880 10.8222 -1.1998 38 1 4.8653 11.1375 -0.6941 39 1 3.8238 14.2690 -2.3291 40 1 5.1396 2.5635 -0.0138 41 1 4.4471 -0.2886 -1.0310 42 1 5.1960 0.1946 0.5098 43 1 3.7017 -0.7724 0.5113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822785707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:23 Heat of formation + Delta-G solvation = 38.211268 kcal Electronic energy + Delta-G solvation = -25087.463407 eV Core-core repulsion = 21328.660309 eV Total energy + Delta-G solvation = -3758.803099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -45.34439 -40.58119 -37.99903 -36.85458 -35.52826 -33.28345 -33.05851 -32.09219 -30.19216 -29.98476 -28.02073 -27.16239 -26.55889 -24.45879 -24.23886 -22.72445 -21.72228 -20.99482 -19.98368 -18.33295 -17.84834 -17.50949 -16.78437 -16.37076 -16.16993 -15.87218 -15.76766 -14.68867 -14.57603 -14.40570 -14.14798 -13.90402 -13.51988 -13.46577 -13.34594 -12.95605 -12.69102 -12.50793 -12.41031 -12.22361 -12.01692 -11.92015 -11.77993 -11.25339 -11.22502 -11.09060 -10.95506 -10.84548 -10.66762 -10.11460 -10.02812 -9.61706 -9.31285 -9.15108 -8.55276 -8.45198 -8.26247 -6.11472 -4.14703 0.62329 1.02787 1.46922 2.46920 2.86973 2.98764 3.27716 3.32585 3.35053 3.50126 3.53527 4.00169 4.37528 4.42925 4.48167 4.67613 4.76377 4.87049 4.96065 5.00849 5.04033 5.13760 5.24513 5.24913 5.29895 5.42133 5.44771 5.52666 5.61192 5.68446 5.89707 5.94980 6.01459 6.15328 6.25013 6.28736 6.37724 6.41232 6.76715 6.98150 7.19893 7.43503 7.55741 7.62235 7.85108 8.26453 8.28604 8.90464 9.50381 10.99404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002207 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.739753 B =12683.272684 C =13100.411190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.141 3.859 4 C -0.208 4.208 5 C -0.039 4.039 6 C -0.049 4.049 7 C 0.212 3.788 8 N -0.386 5.386 9 O 0.081 5.919 10 C 0.220 3.780 11 C 0.180 3.820 12 H 0.123 0.877 13 N -0.840 5.840 14 C -0.143 4.143 15 C 0.026 3.974 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.483 5.483 25 C -0.047 4.047 26 C -0.121 4.121 27 C -0.103 4.103 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.344 0.656 34 H 0.366 0.634 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.138 0.862 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 -24.432 6.545 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.095 3.905 4 C -0.226 4.226 5 C -0.059 4.059 6 C -0.051 4.051 7 C -0.058 4.058 8 N -0.094 5.094 9 O 0.022 5.978 10 C -0.001 4.001 11 C 0.066 3.934 12 H 0.141 0.859 13 N -0.373 5.373 14 C -0.183 4.183 15 C -0.011 4.011 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 N -0.216 5.216 25 C -0.067 4.067 26 C -0.122 4.122 27 C -0.160 4.160 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.184 0.816 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.490 -25.638 7.144 26.991 hybrid contribution 0.265 1.394 -1.816 2.305 sum -4.226 -24.244 5.328 25.180 Atomic orbital electron populations 1.23111 0.78151 1.04093 1.01678 1.86046 1.21529 1.26716 1.88234 1.18985 0.91764 0.84293 0.95477 1.21165 1.00341 0.91674 1.09444 1.21011 0.92892 0.97963 0.93989 1.17218 0.92693 0.87013 1.08198 1.23773 0.86598 0.93941 1.01453 1.74837 1.17595 0.95027 1.21971 1.85236 1.34864 1.12166 1.65510 1.29025 0.79330 0.99037 0.92707 1.20247 1.00191 0.78492 0.94447 0.85898 1.58971 1.08874 1.19435 1.50060 1.22544 1.01500 1.01288 0.93012 1.19100 0.97463 0.86887 0.97700 1.21103 1.44862 0.93446 0.96919 0.92684 1.25002 0.95051 0.97079 0.97131 1.69931 1.45798 1.04520 1.32869 0.86626 0.78924 0.77811 0.84483 1.20204 1.21203 1.20194 1.71957 1.30235 0.97859 1.21531 1.20894 1.00232 0.89744 0.95842 1.19110 0.90589 0.95909 1.06572 1.20602 0.98826 0.94049 1.02504 0.92378 0.88107 0.92409 0.84643 0.84189 0.84305 0.81628 0.91958 0.92154 0.95986 0.96169 0.92762 0.84462 0.91222 0.91452 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.82 9.52 -19.22 -0.18 -3.00 16 3 C 0.14 1.46 6.66 -39.12 -0.26 1.20 16 4 C -0.21 -2.07 9.02 -39.48 -0.36 -2.43 16 5 C -0.04 -0.46 9.69 -39.28 -0.38 -0.85 16 6 C -0.05 -0.68 5.88 -104.87 -0.62 -1.29 16 7 C 0.21 3.44 7.80 -156.10 -1.22 2.22 16 8 N -0.39 -6.42 11.85 30.97 0.37 -6.05 16 9 O 0.08 1.33 11.27 18.05 0.20 1.54 16 10 C 0.22 3.64 7.30 -12.98 -0.09 3.55 16 11 C 0.18 2.90 3.35 -68.86 -0.23 2.67 16 12 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 13 N -0.84 -12.28 9.17 -5.65 -0.05 -12.34 16 14 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 15 C 0.03 0.60 4.74 -27.88 -0.13 0.46 16 16 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 20 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 N -0.48 -8.18 11.25 -9.88 -0.11 -8.29 16 25 C -0.05 -0.57 9.34 -39.28 -0.37 -0.94 16 26 C -0.12 -1.30 5.89 -104.52 -0.62 -1.91 16 27 C -0.10 -0.86 9.78 36.01 0.35 -0.51 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 31 H 0.14 0.99 6.28 -52.49 -0.33 0.67 16 32 H 0.14 1.65 7.87 -52.49 -0.41 1.24 16 33 H 0.34 4.69 8.97 -39.30 -0.35 4.34 16 34 H 0.37 5.39 7.55 -39.29 -0.30 5.10 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.14 1.58 7.86 -52.49 -0.41 1.17 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 43 H 0.07 0.57 7.52 -51.93 -0.39 0.18 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -30.58 367.05 -7.84 -38.42 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.84 Total: 5.32 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.47 Total: -12.38 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.94 Total: -51.43 kcal Atomic # 8 Polarization: -1.48 SS G_CDS: 0.02 Total: -1.46 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.58 -7.84 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822785707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.628 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds