Wall clock time and date at job start Tue Mar 31 2020 11:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38171 * 120.03327 * 2 1 4 4 C 1.38238 * 120.05624 * 180.29664 * 3 2 1 5 5 C 1.38284 * 120.11431 * 359.67131 * 4 3 2 6 6 C 1.38123 * 120.05426 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.02561 * 179.67471 * 2 1 3 8 8 O 1.35901 * 120.05556 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99620 * 179.72453 * 8 7 2 10 10 C 1.50708 * 109.46847 * 180.02562 * 9 8 7 11 11 N 1.29939 * 126.28744 * 270.03019 * 10 9 8 12 12 O 1.21301 * 110.24820 * 179.68540 * 11 10 9 13 13 C 1.33635 * 109.81228 * 0.46466 * 12 11 10 14 14 C 1.50706 * 126.55435 * 179.80380 * 13 12 11 15 15 H 1.08997 * 109.47120 * 164.69104 * 14 13 12 16 16 N 1.46901 * 109.47033 * 44.68743 * 14 13 12 17 17 C 1.53001 * 109.46967 * 284.68925 * 14 13 12 18 18 C 1.53001 * 109.47113 * 184.99971 * 17 14 13 19 19 C 1.50695 * 109.46997 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99971 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00015 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00254 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46912 * 60.00155 * 23 21 19 25 25 H 1.48500 * 109.47044 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46640 * 300.00187 * 23 21 19 27 27 N 1.31133 * 106.89680 * 359.54056 * 13 12 11 28 28 H 1.09000 * 109.47556 * 270.32358 * 1 2 3 29 29 H 1.09001 * 109.46416 * 30.32393 * 1 2 3 30 30 H 1.09003 * 109.46959 * 150.32123 * 1 2 3 31 31 H 1.08003 * 119.96613 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.93946 * 179.70051 * 4 3 2 33 33 H 1.07994 * 119.97241 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.02725 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.46891 * 60.00551 * 9 8 7 36 36 H 1.08999 * 109.47578 * 300.00521 * 9 8 7 37 37 H 1.00910 * 110.99597 * 300.00239 * 16 14 13 38 38 H 1.00898 * 111.00145 * 63.95261 * 16 14 13 39 39 H 1.09002 * 109.46941 * 304.99722 * 17 14 13 40 40 H 1.08998 * 109.47313 * 64.99216 * 17 14 13 41 41 H 1.09002 * 109.47014 * 299.99706 * 18 17 14 42 42 H 1.08996 * 109.47139 * 59.99471 * 18 17 14 43 43 H 0.97005 * 120.00324 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0055 6 6 3.5886 -1.1976 0.0008 7 6 2.2011 -1.2010 0.0068 8 8 1.5233 -2.3789 0.0140 9 6 2.3033 -3.5762 0.0147 10 6 1.3870 -4.7727 0.0224 11 7 0.9234 -5.3794 1.0737 12 8 0.2083 -6.3024 0.7446 13 6 0.1542 -6.3803 -0.5884 14 6 -0.6198 -7.3888 -1.3978 15 1 -0.6939 -7.0465 -2.4300 16 7 -1.9678 -7.5388 -0.8337 17 6 0.1026 -8.7370 -1.3583 18 6 -0.6138 -9.7266 -2.2793 19 6 0.0973 -11.0547 -2.2398 20 1 0.9729 -11.1802 -1.6201 21 6 -0.3699 -12.1095 -2.9948 22 7 -1.4358 -11.9566 -3.7498 23 14 0.5119 -13.7556 -2.9465 24 1 0.5070 -14.2791 -1.5569 25 1 -0.1835 -14.7162 -3.8403 26 1 1.9136 -13.5798 -3.4043 27 7 0.8986 -5.4081 -1.0576 28 1 -0.3634 0.0058 1.0276 29 1 -0.3632 0.8871 -0.5189 30 1 -0.3633 -0.8929 -0.5089 31 1 1.6585 2.1315 -0.0004 32 1 4.1196 2.1329 -0.0111 33 1 5.3552 0.0040 -0.0100 34 1 4.1314 -2.1314 0.0017 35 1 2.9361 -3.5970 0.9019 36 1 2.9282 -3.6033 -0.8780 37 1 -1.9260 -7.8555 0.1235 38 1 -2.4885 -6.6776 -0.9071 39 1 1.1315 -8.6078 -1.6939 40 1 0.0987 -9.1215 -0.3384 41 1 -1.6428 -9.8558 -1.9437 42 1 -0.6099 -9.3420 -3.2991 43 1 -1.7644 -12.6986 -4.2813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822852130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:27 Heat of formation + Delta-G solvation = 45.663268 kcal Electronic energy + Delta-G solvation = -24983.101814 eV Core-core repulsion = 21224.621858 eV Total energy + Delta-G solvation = -3758.479956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.69979 -40.63769 -37.99689 -36.80083 -35.79711 -33.26442 -33.10735 -32.04924 -30.47303 -30.30624 -28.56873 -27.03046 -26.59032 -24.29141 -23.72783 -22.55701 -21.92909 -21.17937 -20.05223 -18.67989 -17.92460 -17.69376 -16.57344 -16.41000 -16.14355 -16.00322 -15.92076 -15.20126 -14.86423 -14.46303 -14.34781 -14.10848 -13.83901 -13.48431 -13.07669 -12.70865 -12.60964 -12.50096 -12.42693 -12.12021 -11.91726 -11.75315 -11.66087 -11.52838 -11.21501 -11.13047 -10.90455 -10.81120 -10.61115 -10.17641 -9.87293 -9.42434 -9.20903 -9.06978 -8.87806 -8.50378 -8.29805 -5.96709 -3.99151 0.94034 0.98929 1.06262 1.83720 2.73933 2.87739 3.35054 3.37603 3.39731 3.41886 3.57261 3.80583 4.35555 4.44956 4.47812 4.56853 4.62847 4.69269 4.71259 4.92587 4.98890 5.07719 5.22095 5.31181 5.35903 5.39507 5.40272 5.50234 5.51578 5.70908 5.83953 5.88741 5.95381 6.07520 6.16297 6.35624 6.39323 6.52220 6.96240 6.96491 7.11697 7.46896 7.71996 7.89519 8.03086 8.06857 8.43373 9.07806 9.64155 11.14080 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.002051 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.119269 B =13650.105206 C =14061.372048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.113 4.113 3 C -0.084 4.084 4 C -0.154 4.154 5 C -0.085 4.085 6 C -0.205 4.205 7 C 0.131 3.869 8 O -0.305 6.305 9 C 0.160 3.840 10 C 0.159 3.841 11 N -0.367 5.367 12 O 0.084 5.916 13 C 0.166 3.834 14 C 0.185 3.815 15 H 0.127 0.873 16 N -0.812 5.812 17 C -0.102 4.102 18 C 0.032 3.968 19 C -0.524 4.524 20 H 0.052 0.948 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.278 1.278 27 N -0.472 5.472 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.350 0.650 38 H 0.341 0.659 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 25.685 8.741 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.114 4.114 3 C -0.102 4.102 4 C -0.172 4.172 5 C -0.103 4.103 6 C -0.224 4.224 7 C 0.086 3.914 8 O -0.218 6.218 9 C 0.083 3.917 10 C -0.114 4.114 11 N -0.075 5.075 12 O 0.022 5.978 13 C -0.057 4.057 14 C 0.070 3.930 15 H 0.144 0.856 16 N -0.340 5.340 17 C -0.141 4.141 18 C -0.005 4.005 19 C -0.563 4.563 20 H 0.070 0.930 21 C -0.143 4.143 22 N -0.530 5.530 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.204 1.204 27 N -0.206 5.206 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.816 25.529 8.547 27.772 hybrid contribution 1.074 -0.376 0.636 1.304 sum 7.891 25.154 9.184 27.916 Atomic orbital electron populations 1.20635 0.90392 1.02982 1.02394 1.19308 0.96702 0.90206 1.05199 1.20907 0.94177 0.96715 0.98387 1.21066 0.94210 0.98160 1.03770 1.20939 0.99910 0.91764 0.97702 1.21279 0.92770 0.99795 1.08525 1.18785 0.90456 0.85010 0.97183 1.86069 1.35275 1.11748 1.88697 1.20520 0.89395 0.77700 1.04044 1.25074 1.02004 0.99893 0.84472 1.74606 1.08022 1.00954 1.23921 1.85278 1.48619 1.38222 1.25648 1.31355 0.95915 0.96621 0.81824 1.20928 0.85536 0.90980 0.95571 0.85580 1.58814 1.12611 1.35921 1.26663 1.21863 0.98715 0.90991 1.02536 1.19016 0.96583 0.91478 0.93436 1.21194 1.12449 0.96249 1.26364 0.92960 1.24983 0.95059 0.98753 0.95480 1.69956 1.23089 1.31887 1.28116 0.86695 0.79764 0.83834 0.77896 1.20297 1.21316 1.20368 1.71917 1.12528 1.07192 1.28950 0.91325 0.91505 0.91084 0.85291 0.85807 0.85652 0.85302 0.89108 0.88479 0.83617 0.84601 0.92260 0.92318 0.94408 0.96544 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.79 36.01 0.35 -0.60 16 2 C -0.11 -1.12 5.89 -104.47 -0.62 -1.74 16 3 C -0.08 -0.67 9.70 -39.61 -0.38 -1.06 16 4 C -0.15 -1.14 10.04 -39.56 -0.40 -1.54 16 5 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 6 C -0.20 -1.86 9.04 -39.43 -0.36 -2.22 16 7 C 0.13 1.42 6.66 -39.21 -0.26 1.16 16 8 O -0.31 -3.78 9.17 -19.43 -0.18 -3.96 16 9 C 0.16 1.81 5.36 36.01 0.19 2.00 16 10 C 0.16 2.31 7.85 -156.38 -1.23 1.08 16 11 N -0.37 -5.62 12.16 30.89 0.38 -5.24 16 12 O 0.08 1.26 11.29 18.12 0.20 1.46 16 13 C 0.17 2.51 7.31 -13.05 -0.10 2.42 16 14 C 0.19 2.86 3.29 -68.86 -0.23 2.63 16 15 H 0.13 1.97 8.14 -51.93 -0.42 1.55 16 16 N -0.81 -11.27 8.68 -5.65 -0.05 -11.32 16 17 C -0.10 -1.94 4.78 -26.73 -0.13 -2.07 16 18 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 19 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 20 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 23 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 N -0.47 -7.45 11.55 -9.87 -0.11 -7.56 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 31 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 32 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.95 6.30 -52.48 -0.33 0.62 16 35 H 0.09 0.84 7.66 -51.93 -0.40 0.45 16 36 H 0.10 0.94 7.66 -51.93 -0.40 0.55 16 37 H 0.35 4.46 8.97 -39.29 -0.35 4.11 16 38 H 0.34 3.91 9.06 -39.29 -0.36 3.56 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -31.98 370.13 -8.53 -40.51 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.97 Total: 3.26 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -4.09 Total: -13.52 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.95 Total: -49.73 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: 0.03 Total: -2.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.98 -8.53 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822852130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.175 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds