Wall clock time and date at job start Tue Mar 31 2020 11:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38171 * 120.03327 * 2 1 4 4 C 1.38238 * 120.05624 * 180.29664 * 3 2 1 5 5 C 1.38284 * 120.11431 * 359.67131 * 4 3 2 6 6 C 1.38123 * 120.05426 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.02561 * 179.67471 * 2 1 3 8 8 O 1.35901 * 120.05556 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99620 * 179.72453 * 8 7 2 10 10 C 1.50708 * 109.46847 * 180.02562 * 9 8 7 11 11 N 1.29939 * 126.28744 * 270.03019 * 10 9 8 12 12 O 1.21301 * 110.24820 * 179.68540 * 11 10 9 13 13 C 1.33635 * 109.81228 * 0.46466 * 12 11 10 14 14 C 1.50706 * 126.55435 * 179.80380 * 13 12 11 15 15 H 1.08997 * 109.47120 * 164.69104 * 14 13 12 16 16 N 1.46901 * 109.47033 * 44.68743 * 14 13 12 17 17 C 1.53001 * 109.46967 * 284.68925 * 14 13 12 18 18 C 1.53001 * 109.47113 * 184.99971 * 17 14 13 19 19 C 1.50695 * 109.46997 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99971 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00015 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00254 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46912 * 60.00155 * 23 21 19 25 25 H 1.48500 * 109.47044 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46640 * 300.00187 * 23 21 19 27 27 N 1.31133 * 106.89680 * 359.54056 * 13 12 11 28 28 H 1.09000 * 109.47556 * 270.32358 * 1 2 3 29 29 H 1.09001 * 109.46416 * 30.32393 * 1 2 3 30 30 H 1.09003 * 109.46959 * 150.32123 * 1 2 3 31 31 H 1.08003 * 119.96613 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.93946 * 179.70051 * 4 3 2 33 33 H 1.07994 * 119.97241 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.02725 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.46891 * 60.00551 * 9 8 7 36 36 H 1.08999 * 109.47578 * 300.00521 * 9 8 7 37 37 H 1.00910 * 110.99597 * 300.00239 * 16 14 13 38 38 H 1.00898 * 111.00145 * 63.95261 * 16 14 13 39 39 H 1.09002 * 109.46941 * 304.99722 * 17 14 13 40 40 H 1.08998 * 109.47313 * 64.99216 * 17 14 13 41 41 H 1.09002 * 109.47014 * 299.99706 * 18 17 14 42 42 H 1.08996 * 109.47139 * 59.99471 * 18 17 14 43 43 H 0.97005 * 120.00324 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0055 6 6 3.5886 -1.1976 0.0008 7 6 2.2011 -1.2010 0.0068 8 8 1.5233 -2.3789 0.0140 9 6 2.3033 -3.5762 0.0147 10 6 1.3870 -4.7727 0.0224 11 7 0.9234 -5.3794 1.0737 12 8 0.2083 -6.3024 0.7446 13 6 0.1542 -6.3803 -0.5884 14 6 -0.6198 -7.3888 -1.3978 15 1 -0.6939 -7.0465 -2.4300 16 7 -1.9678 -7.5388 -0.8337 17 6 0.1026 -8.7370 -1.3583 18 6 -0.6138 -9.7266 -2.2793 19 6 0.0973 -11.0547 -2.2398 20 1 0.9729 -11.1802 -1.6201 21 6 -0.3699 -12.1095 -2.9948 22 7 -1.4358 -11.9566 -3.7498 23 14 0.5119 -13.7556 -2.9465 24 1 0.5070 -14.2791 -1.5569 25 1 -0.1835 -14.7162 -3.8403 26 1 1.9136 -13.5798 -3.4043 27 7 0.8986 -5.4081 -1.0576 28 1 -0.3634 0.0058 1.0276 29 1 -0.3632 0.8871 -0.5189 30 1 -0.3633 -0.8929 -0.5089 31 1 1.6585 2.1315 -0.0004 32 1 4.1196 2.1329 -0.0111 33 1 5.3552 0.0040 -0.0100 34 1 4.1314 -2.1314 0.0017 35 1 2.9361 -3.5970 0.9019 36 1 2.9282 -3.6033 -0.8780 37 1 -1.9260 -7.8555 0.1235 38 1 -2.4885 -6.6776 -0.9071 39 1 1.1315 -8.6078 -1.6939 40 1 0.0987 -9.1215 -0.3384 41 1 -1.6428 -9.8558 -1.9437 42 1 -0.6099 -9.3420 -3.2991 43 1 -1.7644 -12.6986 -4.2813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822852130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:26 Heat of formation + Delta-G solvation = 24.058707 kcal Electronic energy + Delta-G solvation = -24984.038658 eV Core-core repulsion = 21224.621858 eV Total energy + Delta-G solvation = -3759.416800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.88210 -41.35161 -38.72785 -38.17036 -36.95056 -35.12624 -33.86530 -33.27795 -32.02538 -31.13917 -29.46751 -28.24166 -27.68266 -25.85989 -24.89377 -23.53247 -22.73780 -22.44085 -21.42734 -19.58737 -18.93343 -18.90924 -18.32533 -17.38705 -17.32981 -17.01078 -16.59044 -16.54603 -16.19006 -15.59632 -15.50631 -15.20065 -14.57703 -14.27969 -14.17276 -14.08626 -13.92519 -13.71087 -13.43299 -13.24570 -13.12021 -13.02902 -12.77285 -12.50469 -12.48702 -12.38804 -12.29482 -12.15026 -11.87841 -11.71366 -11.58516 -11.26345 -10.97370 -10.47273 -10.03169 -9.82399 -9.18851 -8.11716 -6.21249 -0.18481 0.32545 0.41520 0.72233 1.44223 1.46199 1.53071 1.54717 1.92097 2.45774 2.55654 2.74331 2.78234 3.21758 3.49148 3.54491 3.71861 3.84247 3.88457 3.98643 4.10426 4.16122 4.26441 4.35732 4.37525 4.41160 4.59444 4.64040 4.70958 4.72216 4.80945 4.92866 4.93617 5.23374 5.23762 5.33733 5.46076 5.56092 5.59905 5.78405 5.84861 5.97959 6.00809 6.25887 6.31899 6.45398 6.85466 6.96813 7.46481 8.99151 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.002051 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.119269 B =13650.105206 C =14061.372048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.134 4.134 3 C -0.087 4.087 4 C -0.153 4.153 5 C -0.090 4.090 6 C -0.213 4.213 7 C 0.102 3.898 8 O -0.326 6.326 9 C 0.159 3.841 10 C 0.159 3.841 11 N -0.379 5.379 12 O 0.084 5.916 13 C 0.170 3.830 14 C 0.200 3.800 15 H 0.125 0.875 16 N -0.818 5.818 17 C -0.090 4.090 18 C 0.039 3.961 19 C -0.543 4.543 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.928 5.928 23 Si 0.957 3.043 24 H -0.268 1.268 25 H -0.285 1.285 26 H -0.270 1.270 27 N -0.487 5.487 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.357 0.643 38 H 0.356 0.644 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.018 0.982 42 H -0.008 1.008 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.475 26.927 9.490 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.135 4.135 3 C -0.105 4.105 4 C -0.171 4.171 5 C -0.108 4.108 6 C -0.232 4.232 7 C 0.058 3.942 8 O -0.239 6.239 9 C 0.083 3.917 10 C -0.114 4.114 11 N -0.087 5.087 12 O 0.023 5.977 13 C -0.053 4.053 14 C 0.085 3.915 15 H 0.142 0.858 16 N -0.349 5.349 17 C -0.128 4.128 18 C 0.002 3.998 19 C -0.582 4.582 20 H 0.075 0.925 21 C -0.196 4.196 22 N -0.568 5.568 23 Si 0.783 3.217 24 H -0.193 1.193 25 H -0.211 1.211 26 H -0.195 1.195 27 N -0.221 5.221 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.010 0.990 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.415 26.784 9.316 29.580 hybrid contribution 0.587 -0.655 0.412 0.971 sum 9.002 26.129 9.728 29.299 Atomic orbital electron populations 1.20609 0.90300 1.02784 1.02413 1.19597 0.97182 0.90761 1.05972 1.21224 0.94782 0.96881 0.97628 1.21459 0.94161 0.99228 1.02279 1.21308 1.01247 0.91409 0.96833 1.21516 0.92218 1.01073 1.08360 1.19085 0.91413 0.84660 0.99054 1.86015 1.36172 1.12380 1.89351 1.20703 0.88741 0.76619 1.05625 1.25637 1.01653 1.00379 0.83777 1.74598 1.08486 1.01300 1.24316 1.85267 1.48704 1.38286 1.25398 1.31100 0.95746 0.96564 0.81925 1.20506 0.85892 0.89242 0.95884 0.85751 1.58774 1.11779 1.37046 1.27264 1.21568 0.98265 0.91685 1.01330 1.18825 0.95907 0.91918 0.93175 1.21682 1.12679 0.97665 1.26132 0.92542 1.25869 0.95832 1.02701 0.95174 1.70086 1.24635 1.33040 1.29033 0.85621 0.78697 0.79184 0.78237 1.19333 1.21053 1.19539 1.71927 1.12848 1.07638 1.29691 0.91235 0.89675 0.93206 0.83077 0.83196 0.83273 0.84096 0.87234 0.87137 0.82774 0.82865 0.92433 0.91728 0.96321 0.98978 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.79 71.24 0.70 -1.13 16 2 C -0.13 -2.57 5.89 -19.77 -0.12 -2.69 16 3 C -0.09 -1.24 9.70 22.25 0.22 -1.02 16 4 C -0.15 -1.88 10.04 22.28 0.22 -1.66 16 5 C -0.09 -1.19 10.04 22.25 0.22 -0.97 16 6 C -0.21 -3.58 9.04 22.37 0.20 -3.38 16 7 C 0.10 2.18 6.66 22.51 0.15 2.33 16 8 O -0.33 -8.07 9.17 -92.43 -0.85 -8.91 16 9 C 0.16 3.48 5.36 71.24 0.38 3.87 16 10 C 0.16 4.53 7.85 138.47 1.09 5.62 16 11 N -0.38 -11.36 12.16 -60.36 -0.73 -12.09 16 12 O 0.08 2.46 11.29 74.90 0.85 3.30 16 13 C 0.17 5.06 7.31 88.38 0.65 5.71 16 14 C 0.20 6.16 3.29 44.17 0.15 6.30 16 15 H 0.12 3.90 8.14 -2.39 -0.02 3.89 16 16 N -0.82 -22.42 8.68 -171.79 -1.49 -23.91 16 17 C -0.09 -3.40 4.78 30.59 0.15 -3.26 16 18 C 0.04 1.94 4.86 29.85 0.15 2.09 16 19 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 20 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 21 C 0.00 0.13 5.46 84.65 0.46 0.59 16 22 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 23 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 N -0.49 -15.15 11.55 -303.23 -3.50 -18.66 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.05 1.06 7.53 -2.39 -0.02 1.05 16 31 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.14 1.87 6.30 -2.91 -0.02 1.85 16 35 H 0.11 1.91 7.66 -2.39 -0.02 1.89 16 36 H 0.11 2.05 7.66 -2.39 -0.02 2.03 16 37 H 0.36 8.90 8.97 -89.69 -0.80 8.09 16 38 H 0.36 7.94 9.06 -89.70 -0.81 7.13 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.02 0.98 7.75 -2.39 -0.02 0.96 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -68.83 370.13 0.86 -67.97 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.57 Total: 19.18 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.84 Total: -17.46 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -5.44 Total: -109.98 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: 0.00 Total: -5.61 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.83 0.86 -67.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822852130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.031 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds