Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35794 * 116.99921 * 2 1 4 4 C 1.38635 * 120.12409 * 0.23410 * 3 2 1 5 5 C 1.38139 * 120.06077 * 180.30243 * 4 3 2 6 6 C 1.50701 * 119.84620 * 179.74322 * 5 4 3 7 7 C 1.38419 * 120.31287 * 359.71684 * 5 4 3 8 8 C 1.37970 * 120.24717 * 0.02562 * 7 5 4 9 9 C 1.39333 * 119.93403 * 359.97438 * 8 7 5 10 10 C 1.48295 * 120.15601 * 180.02562 * 9 8 7 11 11 N 1.30816 * 126.42266 * 179.97438 * 10 9 8 12 12 O 1.21288 * 110.09271 * 180.02562 * 11 10 9 13 13 C 1.33680 * 110.03307 * 0.02562 * 12 11 10 14 14 C 1.50698 * 126.42996 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46862 * 195.02041 * 14 13 12 16 16 N 1.46901 * 109.47246 * 315.02155 * 14 13 12 17 17 C 1.53006 * 109.46914 * 75.02093 * 14 13 12 18 18 C 1.52999 * 109.46626 * 174.99639 * 17 14 13 19 19 C 1.50706 * 109.46957 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99816 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00340 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00347 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99775 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46867 * 90.00546 * 23 21 19 25 25 H 1.48501 * 109.47216 * 210.00404 * 23 21 19 26 26 H 1.48499 * 109.47135 * 330.00745 * 23 21 19 27 27 N 1.30974 * 107.13345 * 0.23700 * 13 12 11 28 28 H 1.08992 * 109.47364 * 59.99840 * 1 2 3 29 29 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46747 * 299.99489 * 1 2 3 31 31 H 1.07992 * 119.96841 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.46976 * 269.97785 * 6 5 4 33 33 H 1.09003 * 109.46699 * 29.97626 * 6 5 4 34 34 H 1.08995 * 109.46912 * 149.97379 * 6 5 4 35 35 H 1.08000 * 119.88002 * 180.02562 * 7 5 4 36 36 H 1.08003 * 120.03128 * 179.97438 * 8 7 5 37 37 H 1.00893 * 110.99780 * 296.04661 * 16 14 13 38 38 H 1.00906 * 110.99754 * 59.99985 * 16 14 13 39 39 H 1.08993 * 109.46955 * 295.00111 * 17 14 13 40 40 H 1.09000 * 109.47050 * 54.99940 * 17 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 18 17 14 42 42 H 1.09000 * 109.47160 * 60.00369 * 18 17 14 43 43 H 0.96991 * 119.99882 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2929 2.3743 0.0049 5 6 1.9213 3.6044 -0.0014 6 6 1.0985 4.8670 -0.0019 7 6 3.3033 3.6829 -0.0067 8 6 4.0648 2.5324 -0.0063 9 6 3.4416 1.2862 0.0000 10 6 4.2553 0.0464 0.0011 11 7 3.8014 -1.1805 0.0072 12 8 4.7252 -1.9665 0.0067 13 6 5.8878 -1.3067 0.0007 14 6 7.2645 -1.9196 -0.0013 15 1 8.0009 -1.1596 0.2599 16 7 7.3165 -3.0101 0.9815 17 6 7.5745 -2.4728 -1.3938 18 6 9.0166 -2.9824 -1.4307 19 6 9.3221 -3.5267 -2.8024 20 1 8.5637 -3.5104 -3.5710 21 6 10.5699 -4.0456 -3.0760 22 7 10.8367 -4.5201 -4.2732 23 14 11.8820 -4.0732 -1.7467 24 1 11.7920 -5.3471 -0.9889 25 1 13.2239 -3.9637 -2.3732 26 1 11.6730 -2.9309 -0.8211 27 7 5.6057 -0.0277 0.0025 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2144 2.3195 0.0083 32 1 0.8963 5.1684 -1.0297 33 1 0.1564 4.6868 0.5160 34 1 1.6476 5.6586 0.5077 35 1 3.7873 4.6483 -0.0113 36 1 5.1428 2.5977 -0.0109 37 1 7.1789 -2.6600 1.9177 38 1 6.6425 -3.7280 0.7611 39 1 6.8932 -3.2933 -1.6187 40 1 7.4491 -1.6831 -2.1347 41 1 9.6979 -2.1619 -1.2058 42 1 9.1419 -3.7721 -0.6898 43 1 11.7146 -4.8848 -4.4657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823163088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = 46.992042 kcal Electronic energy + Delta-G solvation = -25544.706374 eV Core-core repulsion = 21786.284038 eV Total energy + Delta-G solvation = -3758.422336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.37234 -40.55081 -37.96342 -36.80574 -35.80135 -33.36108 -32.86074 -31.46184 -30.62054 -30.44891 -28.29634 -27.26890 -26.82105 -24.24453 -23.82589 -22.45952 -22.02161 -20.91217 -20.04554 -18.13789 -17.88602 -17.39657 -16.70667 -16.53117 -16.10125 -16.06760 -15.88137 -15.06433 -14.64353 -14.24374 -14.18318 -14.09566 -13.91312 -13.79130 -12.91383 -12.75780 -12.69400 -12.60331 -12.42009 -12.24760 -11.88204 -11.82181 -11.71600 -11.39232 -11.24797 -11.06477 -10.94411 -10.85046 -10.40474 -9.97238 -9.76829 -9.58301 -9.12648 -9.03027 -8.92607 -8.45502 -8.37794 -5.97541 -3.95429 0.52982 1.07798 1.39897 2.43121 2.87525 2.98400 3.39299 3.45813 3.46898 3.49239 3.51304 4.00339 4.32566 4.47143 4.52915 4.63317 4.65995 4.76426 4.80888 4.89085 5.09629 5.15861 5.17468 5.22074 5.25643 5.31636 5.37978 5.38691 5.53002 5.66070 5.70585 5.91815 5.94101 6.11634 6.21552 6.31337 6.40841 6.44349 6.84607 7.02141 7.05914 7.37459 7.43452 7.54638 7.86337 8.28097 8.59411 9.07156 9.64946 11.15934 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002502 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.348339 B =11188.335369 C =11620.121442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.293 6.293 3 C 0.163 3.837 4 C -0.216 4.216 5 C -0.031 4.031 6 C -0.118 4.118 7 C -0.162 4.162 8 C -0.032 4.032 9 C -0.059 4.059 10 C 0.209 3.791 11 N -0.360 5.360 12 O 0.076 5.924 13 C 0.157 3.843 14 C 0.184 3.816 15 H 0.124 0.876 16 N -0.817 5.817 17 C -0.094 4.094 18 C -0.003 4.003 19 C -0.521 4.521 20 H 0.069 0.931 21 C 0.065 3.935 22 N -0.906 5.906 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.263 1.263 27 N -0.479 5.479 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.341 0.659 38 H 0.351 0.649 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.016 0.984 42 H 0.031 0.969 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.792 16.397 12.828 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.115 3.885 4 C -0.235 4.235 5 C -0.032 4.032 6 C -0.174 4.174 7 C -0.180 4.180 8 C -0.052 4.052 9 C -0.061 4.061 10 C -0.061 4.061 11 N -0.066 5.066 12 O 0.016 5.984 13 C -0.066 4.066 14 C 0.069 3.931 15 H 0.142 0.858 16 N -0.346 5.346 17 C -0.133 4.133 18 C -0.041 4.041 19 C -0.559 4.559 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.545 5.545 23 Si 0.710 3.290 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.188 1.188 27 N -0.212 5.212 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.050 0.950 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.586 16.193 12.495 29.737 hybrid contribution -0.455 0.208 0.681 0.845 sum -22.042 16.401 13.176 30.470 Atomic orbital electron populations 1.23124 0.78387 1.04314 1.01186 1.86296 1.21187 1.25644 1.87312 1.18955 0.90789 0.85056 0.93716 1.20996 1.00036 0.91259 1.11188 1.19866 0.94067 0.94609 0.94623 1.20864 0.99342 0.94431 1.02799 1.20904 0.92916 0.98504 1.05724 1.21090 1.00930 0.89655 0.93526 1.16652 0.88099 0.89394 1.11999 1.23621 0.87729 0.92534 1.02193 1.75051 1.10227 1.01105 1.20249 1.85279 1.12359 1.35229 1.65527 1.30941 0.94178 0.86864 0.94650 1.20813 0.81901 0.93088 0.97327 0.85830 1.58871 1.58661 1.12172 1.04857 1.21645 1.01423 1.00185 0.90009 1.19480 0.90127 0.96586 0.97899 1.21150 0.98942 1.39548 0.96263 0.91253 1.25016 0.98437 0.94750 0.95340 1.69922 1.22288 1.41605 1.20712 0.86733 0.80814 0.79175 0.82287 1.20273 1.21728 1.18775 1.71967 1.11058 1.17360 1.20830 0.92547 0.87951 0.92623 0.84837 0.90557 0.91364 0.90951 0.85008 0.83856 0.84614 0.83470 0.91792 0.91675 0.96614 0.95036 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.29 -3.73 8.84 -19.10 -0.17 -3.89 16 3 C 0.16 2.04 6.69 -38.84 -0.26 1.78 16 4 C -0.22 -2.04 8.68 -39.47 -0.34 -2.38 16 5 C -0.03 -0.26 5.88 -104.59 -0.62 -0.88 16 6 C -0.12 -0.62 10.00 36.01 0.36 -0.26 16 7 C -0.16 -1.49 9.68 -39.61 -0.38 -1.87 16 8 C -0.03 -0.38 9.70 -39.27 -0.38 -0.76 16 9 C -0.06 -0.83 5.89 -104.76 -0.62 -1.45 16 10 C 0.21 3.43 7.78 -156.11 -1.21 2.22 16 11 N -0.36 -6.12 10.70 30.97 0.33 -5.79 16 12 O 0.08 1.23 11.27 18.01 0.20 1.43 16 13 C 0.16 2.48 7.29 -12.98 -0.09 2.38 16 14 C 0.18 2.82 3.29 -68.86 -0.23 2.59 16 15 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 16 N -0.82 -10.98 8.68 -5.65 -0.05 -11.03 16 17 C -0.09 -1.79 4.78 -26.73 -0.13 -1.92 16 18 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 19 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 20 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 22 N -0.91 -28.18 13.96 55.43 0.77 -27.40 16 23 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 27 N -0.48 -7.89 11.26 -9.87 -0.11 -8.00 16 28 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.14 1.62 7.88 -52.48 -0.41 1.21 16 37 H 0.34 3.74 9.06 -39.30 -0.36 3.39 16 38 H 0.35 4.42 8.97 -39.29 -0.35 4.07 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 42 H 0.03 0.73 7.18 -51.93 -0.37 0.35 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -34.30 364.59 -7.60 -41.90 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.96 Total: 2.96 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.45 Total: -12.86 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.94 Total: -52.22 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: 0.03 Total: -2.46 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.30 -7.60 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823163088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.892 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds