Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35794 * 116.99921 * 2 1 4 4 C 1.38635 * 120.12409 * 0.23410 * 3 2 1 5 5 C 1.38139 * 120.06077 * 180.30243 * 4 3 2 6 6 C 1.50701 * 119.84620 * 179.74322 * 5 4 3 7 7 C 1.38419 * 120.31287 * 359.71684 * 5 4 3 8 8 C 1.37970 * 120.24717 * 0.02562 * 7 5 4 9 9 C 1.39333 * 119.93403 * 359.97438 * 8 7 5 10 10 C 1.48295 * 120.15601 * 180.02562 * 9 8 7 11 11 N 1.30816 * 126.42266 * 179.97438 * 10 9 8 12 12 O 1.21288 * 110.09271 * 180.02562 * 11 10 9 13 13 C 1.33680 * 110.03307 * 0.02562 * 12 11 10 14 14 C 1.50698 * 126.42996 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46862 * 195.02041 * 14 13 12 16 16 N 1.46901 * 109.47246 * 315.02155 * 14 13 12 17 17 C 1.53006 * 109.46914 * 75.02093 * 14 13 12 18 18 C 1.52999 * 109.46626 * 174.99639 * 17 14 13 19 19 C 1.50706 * 109.46957 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99816 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00340 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00347 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99775 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46867 * 90.00546 * 23 21 19 25 25 H 1.48501 * 109.47216 * 210.00404 * 23 21 19 26 26 H 1.48499 * 109.47135 * 330.00745 * 23 21 19 27 27 N 1.30974 * 107.13345 * 0.23700 * 13 12 11 28 28 H 1.08992 * 109.47364 * 59.99840 * 1 2 3 29 29 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46747 * 299.99489 * 1 2 3 31 31 H 1.07992 * 119.96841 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.46976 * 269.97785 * 6 5 4 33 33 H 1.09003 * 109.46699 * 29.97626 * 6 5 4 34 34 H 1.08995 * 109.46912 * 149.97379 * 6 5 4 35 35 H 1.08000 * 119.88002 * 180.02562 * 7 5 4 36 36 H 1.08003 * 120.03128 * 179.97438 * 8 7 5 37 37 H 1.00893 * 110.99780 * 296.04661 * 16 14 13 38 38 H 1.00906 * 110.99754 * 59.99985 * 16 14 13 39 39 H 1.08993 * 109.46955 * 295.00111 * 17 14 13 40 40 H 1.09000 * 109.47050 * 54.99940 * 17 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 18 17 14 42 42 H 1.09000 * 109.47160 * 60.00369 * 18 17 14 43 43 H 0.96991 * 119.99882 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2929 2.3743 0.0049 5 6 1.9213 3.6044 -0.0014 6 6 1.0985 4.8670 -0.0019 7 6 3.3033 3.6829 -0.0067 8 6 4.0648 2.5324 -0.0063 9 6 3.4416 1.2862 0.0000 10 6 4.2553 0.0464 0.0011 11 7 3.8014 -1.1805 0.0072 12 8 4.7252 -1.9665 0.0067 13 6 5.8878 -1.3067 0.0007 14 6 7.2645 -1.9196 -0.0013 15 1 8.0009 -1.1596 0.2599 16 7 7.3165 -3.0101 0.9815 17 6 7.5745 -2.4728 -1.3938 18 6 9.0166 -2.9824 -1.4307 19 6 9.3221 -3.5267 -2.8024 20 1 8.5637 -3.5104 -3.5710 21 6 10.5699 -4.0456 -3.0760 22 7 10.8367 -4.5201 -4.2732 23 14 11.8820 -4.0732 -1.7467 24 1 11.7920 -5.3471 -0.9889 25 1 13.2239 -3.9637 -2.3732 26 1 11.6730 -2.9309 -0.8211 27 7 5.6057 -0.0277 0.0025 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2144 2.3195 0.0083 32 1 0.8963 5.1684 -1.0297 33 1 0.1564 4.6868 0.5160 34 1 1.6476 5.6586 0.5077 35 1 3.7873 4.6483 -0.0113 36 1 5.1428 2.5977 -0.0109 37 1 7.1789 -2.6600 1.9177 38 1 6.6425 -3.7280 0.7611 39 1 6.8932 -3.2933 -1.6187 40 1 7.4491 -1.6831 -2.1347 41 1 9.6979 -2.1619 -1.2058 42 1 9.1419 -3.7721 -0.6898 43 1 11.7146 -4.8848 -4.4657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823163088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = 22.008362 kcal Electronic energy + Delta-G solvation = -25545.789748 eV Core-core repulsion = 21786.284038 eV Total energy + Delta-G solvation = -3759.505709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.60631 -41.33118 -38.73149 -38.17213 -36.95328 -35.09798 -34.05134 -32.75412 -32.19807 -31.23681 -28.92708 -28.48677 -27.95813 -25.68451 -25.02197 -23.43739 -22.96749 -22.25355 -21.46966 -19.24198 -19.15775 -18.72201 -18.27233 -17.49761 -17.27534 -16.84630 -16.80084 -16.46635 -15.91757 -15.48306 -15.35998 -14.90460 -14.72374 -14.62141 -14.58914 -14.18520 -13.80780 -13.66932 -13.43985 -13.18563 -12.97709 -12.88554 -12.78289 -12.53793 -12.45279 -12.22807 -12.06573 -12.01540 -11.86342 -11.78923 -11.56328 -11.32436 -11.09375 -10.69253 -10.07703 -9.82018 -9.22207 -8.22597 -6.26312 -0.39989 0.22339 0.30793 1.33204 1.45002 1.46237 1.59379 1.71077 2.21167 2.39227 2.44316 2.64584 2.88461 3.14104 3.50310 3.61839 3.71353 3.93771 3.96430 4.08542 4.22245 4.25390 4.28505 4.30252 4.41440 4.48852 4.63317 4.68254 4.71571 4.76286 4.78429 4.84258 4.88974 5.09363 5.12375 5.22193 5.31035 5.48859 5.50825 5.66621 5.70581 5.73690 5.95513 6.28457 6.34259 6.45342 6.82192 7.06643 7.38012 8.94441 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002502 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.348339 B =11188.335369 C =11620.121442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.150 3.850 4 C -0.215 4.215 5 C -0.022 4.022 6 C -0.117 4.117 7 C -0.161 4.161 8 C -0.041 4.041 9 C -0.103 4.103 10 C 0.207 3.793 11 N -0.380 5.380 12 O 0.071 5.929 13 C 0.159 3.841 14 C 0.201 3.799 15 H 0.134 0.866 16 N -0.816 5.816 17 C -0.086 4.086 18 C 0.004 3.996 19 C -0.532 4.532 20 H 0.026 0.974 21 C 0.000 4.000 22 N -0.957 5.957 23 Si 0.956 3.044 24 H -0.267 1.267 25 H -0.290 1.290 26 H -0.240 1.240 27 N -0.490 5.490 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.358 0.642 38 H 0.356 0.644 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.022 0.978 42 H 0.040 0.960 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.729 18.580 15.121 33.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.102 3.898 4 C -0.233 4.233 5 C -0.023 4.023 6 C -0.173 4.173 7 C -0.179 4.179 8 C -0.061 4.061 9 C -0.106 4.106 10 C -0.063 4.063 11 N -0.089 5.089 12 O 0.013 5.987 13 C -0.065 4.065 14 C 0.086 3.914 15 H 0.152 0.848 16 N -0.347 5.347 17 C -0.125 4.125 18 C -0.034 4.034 19 C -0.570 4.570 20 H 0.044 0.956 21 C -0.196 4.196 22 N -0.598 5.598 23 Si 0.779 3.221 24 H -0.192 1.192 25 H -0.216 1.216 26 H -0.163 1.163 27 N -0.224 5.224 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.546 18.373 14.813 32.639 hybrid contribution -0.326 -0.399 -0.117 0.529 sum -22.873 17.974 14.695 32.591 Atomic orbital electron populations 1.23399 0.76193 1.05450 1.02720 1.86246 1.23648 1.26374 1.87438 1.19184 0.90565 0.86004 0.94047 1.21326 1.01251 0.90534 1.10213 1.20338 0.94167 0.95711 0.92098 1.20963 0.99543 0.92869 1.03914 1.21244 0.93412 0.98667 1.04581 1.21177 1.01020 0.89871 0.94035 1.16993 0.89049 0.89210 1.15324 1.24158 0.87842 0.93275 1.01003 1.75034 1.10506 1.01569 1.21769 1.85250 1.12403 1.35261 1.65790 1.30983 0.94203 0.86846 0.94430 1.20485 0.81912 0.93584 0.95467 0.84804 1.58847 1.58831 1.11601 1.05468 1.21411 0.99048 0.99673 0.92405 1.19360 0.92534 0.96747 0.94722 1.21544 0.98094 1.39479 0.97870 0.95571 1.26051 1.01274 0.94311 0.97931 1.70088 1.23178 1.43170 1.23339 0.85577 0.77030 0.80312 0.79209 1.19157 1.21612 1.16309 1.71962 1.11455 1.17643 1.21312 0.91135 0.87196 0.90809 0.82192 0.89377 0.89932 0.89576 0.82339 0.84369 0.82672 0.82877 0.92359 0.92979 0.95927 0.94118 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -8.27 8.84 -91.24 -0.81 -9.07 16 3 C 0.15 3.71 6.69 22.75 0.15 3.86 16 4 C -0.21 -3.61 8.68 22.34 0.19 -3.41 16 5 C -0.02 -0.32 5.88 -19.84 -0.12 -0.43 16 6 C -0.12 -0.77 10.00 71.24 0.71 -0.05 16 7 C -0.16 -2.64 9.68 22.25 0.22 -2.42 16 8 C -0.04 -0.95 9.70 22.47 0.22 -0.74 16 9 C -0.10 -2.94 5.89 -19.95 -0.12 -3.06 16 10 C 0.21 6.97 7.78 137.24 1.07 8.04 16 11 N -0.38 -13.32 10.70 -59.05 -0.63 -13.95 16 12 O 0.07 2.33 11.27 74.52 0.84 3.17 16 13 C 0.16 5.03 7.29 88.35 0.64 5.67 16 14 C 0.20 5.98 3.29 44.17 0.15 6.12 16 15 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 16 N -0.82 -20.58 8.68 -171.79 -1.49 -22.07 16 17 C -0.09 -3.31 4.78 30.60 0.15 -3.17 16 18 C 0.00 0.18 3.93 29.85 0.12 0.29 16 19 C -0.53 -30.92 9.66 25.60 0.25 -30.67 16 20 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 21 C 0.00 0.02 5.47 84.65 0.46 0.48 16 22 N -0.96 -61.13 13.96 21.45 0.30 -60.83 16 23 Si 0.96 44.64 27.47 68.60 1.88 46.53 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 27 N -0.49 -16.38 11.26 -302.42 -3.41 -19.78 16 28 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 31 H 0.16 1.70 6.30 -2.91 -0.02 1.68 16 32 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 34 H 0.09 0.38 8.08 -2.39 -0.02 0.36 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.14 3.18 7.88 -2.91 -0.02 3.16 16 37 H 0.36 7.12 9.06 -89.70 -0.81 6.30 16 38 H 0.36 8.53 8.97 -89.69 -0.80 7.72 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 42 H 0.04 1.80 7.18 -2.39 -0.02 1.78 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -77.08 364.59 1.27 -75.81 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.62 Total: 18.35 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 5.20 Total: -18.15 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -5.23 Total: -116.64 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: 0.03 Total: -5.90 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -77.08 1.27 -75.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823163088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.820 kcal (2) G-P(sol) polarization free energy of solvation -77.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds