Wall clock time and date at job start Tue Mar 31 2020 11:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30885 * 119.96912 * 2 1 4 4 C 1.34166 * 121.17557 * 180.28767 * 3 2 1 5 5 C 1.38692 * 132.23849 * 179.69485 * 4 3 2 6 6 C 1.38858 * 107.67627 * 179.97438 * 5 4 3 7 7 N 1.31283 * 108.98970 * 0.02562 * 6 5 4 8 8 N 1.37274 * 120.91402 * 359.70148 * 4 3 2 9 9 C 1.36046 * 119.98027 * 359.97438 * 8 4 3 10 10 C 1.38143 * 118.88585 * 0.02562 * 9 8 4 11 11 C 1.47462 * 120.50926 * 179.97438 * 10 9 8 12 12 O 1.21510 * 119.99701 * 173.83325 * 11 10 9 13 13 O 1.34747 * 120.00074 * 354.11397 * 11 10 9 14 14 C 1.45199 * 116.99594 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46649 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47297 * 299.99798 * 15 14 13 17 17 C 1.52998 * 109.47139 * 60.00149 * 15 14 13 18 18 C 1.53001 * 109.46711 * 180.02562 * 15 14 13 19 19 C 1.50707 * 109.46616 * 180.02562 * 18 15 14 20 20 H 1.07998 * 120.00300 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99730 * 180.02562 * 19 18 15 22 22 N 1.31519 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00204 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46964 * 59.99446 * 23 21 19 25 25 H 1.48494 * 109.47420 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47023 * 299.99926 * 23 21 19 27 27 H 1.09001 * 109.46869 * 263.91830 * 1 2 3 28 28 H 1.09000 * 109.47100 * 23.92454 * 1 2 3 29 29 H 1.09002 * 109.47161 * 143.92018 * 1 2 3 30 30 H 1.07997 * 126.16859 * 0.02938 * 5 4 3 31 31 H 1.08007 * 125.50636 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.56104 * 180.02562 * 9 8 4 33 33 H 1.08996 * 109.47408 * 299.99852 * 14 13 11 34 34 H 1.09000 * 109.47662 * 60.00431 * 14 13 11 35 35 H 1.09003 * 109.46827 * 60.00215 * 16 15 14 36 36 H 1.08998 * 109.47485 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.47356 * 300.00296 * 16 15 14 38 38 H 1.09004 * 109.47202 * 59.99885 * 17 15 14 39 39 H 1.08994 * 109.47195 * 179.97438 * 17 15 14 40 40 H 1.08993 * 109.47093 * 299.99803 * 17 15 14 41 41 H 1.09004 * 109.47199 * 299.99851 * 18 15 14 42 42 H 1.08996 * 109.47279 * 60.00631 * 18 15 14 43 43 H 0.97004 * 119.99621 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1339 0.0000 4 6 3.5022 1.1621 -0.0058 5 6 4.4126 2.2083 -0.0126 6 6 5.6874 1.6578 -0.0158 7 7 5.5875 0.3488 -0.0119 8 7 4.2321 -0.0005 -0.0057 9 6 3.5955 -1.2028 0.0008 10 6 2.2143 -1.2266 0.0067 11 6 1.4877 -2.5098 0.0132 12 8 0.2784 -2.5225 0.1314 13 8 2.1652 -3.6684 -0.1062 14 6 1.3850 -4.8928 -0.0912 15 6 2.3199 -6.0951 -0.2377 16 6 3.0807 -5.9913 -1.5610 17 6 3.3161 -6.1109 0.9235 18 6 1.4977 -7.3853 -0.2225 19 6 2.4187 -8.5695 -0.3661 20 1 3.4839 -8.4172 -0.4585 21 6 1.9013 -9.8475 -0.3796 22 7 0.6042 -10.0330 -0.2666 23 14 3.0428 -11.3154 -0.5568 24 1 4.0081 -11.3309 0.5716 25 1 2.2449 -12.5677 -0.5423 26 1 3.7832 -11.2146 -1.8402 27 1 -0.3633 -0.1089 1.0219 28 1 -0.3633 0.9394 -0.4168 29 1 -0.3633 -0.8306 -0.6052 30 1 4.1733 3.2615 -0.0141 31 1 6.6119 2.2163 -0.0208 32 1 4.1605 -2.1233 0.0013 33 1 0.8426 -4.9665 0.8513 34 1 0.6756 -4.8818 -0.9187 35 1 3.6664 -5.0721 -1.5722 36 1 3.7471 -6.8476 -1.6651 37 1 2.3710 -5.9801 -2.3882 38 1 2.7740 -6.1848 1.8663 39 1 3.9818 -6.9676 0.8194 40 1 3.9018 -5.1917 0.9123 41 1 0.9553 -7.4595 0.7201 42 1 0.7884 -7.3738 -1.0500 43 1 0.2402 -10.9322 -0.2764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835387320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:34 Heat of formation + Delta-G solvation = 19.685769 kcal Electronic energy + Delta-G solvation = -26066.604682 eV Core-core repulsion = 22306.998257 eV Total energy + Delta-G solvation = -3759.606425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.72970 -40.53296 -38.55397 -37.21951 -35.64108 -34.61531 -32.47246 -32.34014 -30.24406 -28.40245 -27.37996 -26.57582 -26.50496 -25.11811 -23.41597 -22.80468 -21.87856 -21.30044 -19.11017 -18.54648 -17.71184 -16.99641 -16.73008 -16.38234 -16.08366 -15.98064 -15.54777 -14.61422 -14.53593 -14.21734 -14.03632 -13.68959 -13.63628 -13.29128 -13.11826 -12.69218 -12.48751 -12.40202 -12.10903 -12.10380 -11.70154 -11.64396 -11.35539 -11.01630 -10.90528 -10.68124 -10.62901 -10.46747 -10.43291 -10.31120 -10.15111 -9.88900 -9.81019 -9.30190 -9.02577 -8.41330 -8.33794 -6.05828 -4.07306 -0.09657 0.25150 1.53620 1.99848 2.43987 2.52097 3.06628 3.29384 3.34750 3.36307 3.39034 3.66208 3.83175 4.36632 4.41905 4.56758 4.79975 4.90758 5.02763 5.29527 5.31576 5.35327 5.39286 5.40379 5.45567 5.54619 5.70450 5.84982 5.86073 6.03161 6.07096 6.08457 6.26104 6.40027 6.47637 6.62118 6.66142 6.96037 7.01678 7.02925 7.05139 7.24200 7.53774 7.64533 7.65109 7.92139 8.33273 8.96652 9.56125 11.05684 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.002717 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.908642 B =10304.839968 C =11306.164994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.260 3.740 3 N -0.474 5.474 4 C 0.268 3.732 5 C -0.266 4.266 6 C 0.102 3.898 7 N -0.308 5.308 8 N -0.323 5.323 9 C 0.246 3.754 10 C -0.228 4.228 11 C 0.523 3.477 12 O -0.492 6.492 13 O -0.349 6.349 14 C 0.082 3.918 15 C -0.059 4.059 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.035 3.965 19 C -0.512 4.512 20 H 0.061 0.939 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.166 0.834 31 H 0.203 0.797 32 H 0.199 0.801 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 22.687 0.506 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.187 5.187 4 C 0.043 3.957 5 C -0.296 4.296 6 C -0.078 4.078 7 N -0.130 5.130 8 N -0.093 5.093 9 C 0.108 3.892 10 C -0.237 4.237 11 C 0.365 3.635 12 O -0.381 6.381 13 O -0.265 6.265 14 C 0.009 3.991 15 C -0.059 4.059 16 C -0.184 4.184 17 C -0.184 4.184 18 C -0.002 4.002 19 C -0.550 4.550 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.183 0.817 31 H 0.219 0.781 32 H 0.216 0.784 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.293 22.368 0.548 22.993 hybrid contribution 0.478 -0.964 -0.048 1.077 sum 5.772 21.404 0.500 22.174 Atomic orbital electron populations 1.21166 0.85619 1.04971 1.05218 1.21997 0.98279 0.85280 0.84936 1.68147 1.03678 1.27584 1.19251 1.20916 0.88285 0.87086 0.99389 1.21051 0.89542 0.98874 1.20141 1.24023 0.99142 0.90949 0.93720 1.77999 0.88746 1.15566 1.30676 1.47223 1.07992 1.06096 1.48003 1.22828 0.91991 0.89036 0.85329 1.19788 0.91671 0.94314 1.17908 1.20052 0.85699 0.83894 0.73833 1.90830 1.14272 1.87535 1.45497 1.86511 1.42387 1.15058 1.82506 1.23636 0.94080 0.78999 1.02396 1.20848 0.95787 0.93236 0.96043 1.21727 0.99955 1.00607 0.96098 1.21726 0.98890 1.00634 0.97133 1.19125 0.94713 0.88761 0.97562 1.21098 0.93459 0.90442 1.49998 0.92135 1.25007 0.94965 0.99039 0.95423 1.69952 1.11133 1.21950 1.50379 0.86678 0.80739 0.82040 0.78679 1.20256 1.21354 1.20251 0.88593 0.90073 0.87226 0.81694 0.78070 0.78402 0.91102 0.91104 0.94366 0.91455 0.93627 0.93629 0.91442 0.94383 0.96263 0.96251 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.93 36.01 0.32 -0.76 16 2 C 0.26 2.97 6.87 -81.72 -0.56 2.40 16 3 N -0.47 -5.77 10.37 -8.16 -0.08 -5.85 16 4 C 0.27 3.22 7.91 -155.31 -1.23 1.99 16 5 C -0.27 -2.53 10.91 -39.18 -0.43 -2.96 16 6 C 0.10 0.86 11.95 -17.56 -0.21 0.65 16 7 N -0.31 -3.53 12.65 30.49 0.39 -3.14 16 8 N -0.32 -3.86 3.88 -11.66 -0.05 -3.91 16 9 C 0.25 2.69 10.92 -15.72 -0.17 2.52 16 10 C -0.23 -2.65 5.88 -104.89 -0.62 -3.27 16 11 C 0.52 6.95 7.83 34.49 0.27 7.22 16 12 O -0.49 -7.26 13.24 -19.27 -0.26 -7.52 16 13 O -0.35 -4.97 8.17 -40.62 -0.33 -5.30 16 14 C 0.08 1.34 4.33 37.16 0.16 1.51 16 15 C -0.06 -1.10 0.61 -154.51 -0.09 -1.20 16 16 C -0.13 -2.23 8.08 37.15 0.30 -1.93 16 17 C -0.13 -2.23 8.08 37.16 0.30 -1.93 16 18 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 19 C -0.51 -13.32 7.65 -34.44 -0.26 -13.58 16 20 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 23 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.11 1.14 5.91 -51.93 -0.31 0.83 16 30 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.20 1.81 7.65 -52.48 -0.40 1.41 16 33 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.58 7.68 -51.93 -0.40 0.18 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 40 H 0.04 0.57 7.68 -51.93 -0.40 0.18 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -30.81 359.29 -7.49 -38.30 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.85 Total: -1.58 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.43 Total: -7.14 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.99 Total: -38.05 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.59 Total: -12.82 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.81 -7.49 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835387320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.984 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds