Wall clock time and date at job start Tue Mar 31 2020 11:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30885 * 119.96912 * 2 1 4 4 C 1.34166 * 121.17557 * 180.28767 * 3 2 1 5 5 C 1.38692 * 132.23849 * 179.69485 * 4 3 2 6 6 C 1.38858 * 107.67627 * 179.97438 * 5 4 3 7 7 N 1.31283 * 108.98970 * 0.02562 * 6 5 4 8 8 N 1.37274 * 120.91402 * 359.70148 * 4 3 2 9 9 C 1.36046 * 119.98027 * 359.97438 * 8 4 3 10 10 C 1.38143 * 118.88585 * 0.02562 * 9 8 4 11 11 C 1.47462 * 120.50926 * 179.97438 * 10 9 8 12 12 O 1.21510 * 119.99701 * 173.83325 * 11 10 9 13 13 O 1.34747 * 120.00074 * 354.11397 * 11 10 9 14 14 C 1.45199 * 116.99594 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46649 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47297 * 299.99798 * 15 14 13 17 17 C 1.52998 * 109.47139 * 60.00149 * 15 14 13 18 18 C 1.53001 * 109.46711 * 180.02562 * 15 14 13 19 19 C 1.50707 * 109.46616 * 180.02562 * 18 15 14 20 20 H 1.07998 * 120.00300 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99730 * 180.02562 * 19 18 15 22 22 N 1.31519 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00204 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46964 * 59.99446 * 23 21 19 25 25 H 1.48494 * 109.47420 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47023 * 299.99926 * 23 21 19 27 27 H 1.09001 * 109.46869 * 263.91830 * 1 2 3 28 28 H 1.09000 * 109.47100 * 23.92454 * 1 2 3 29 29 H 1.09002 * 109.47161 * 143.92018 * 1 2 3 30 30 H 1.07997 * 126.16859 * 0.02938 * 5 4 3 31 31 H 1.08007 * 125.50636 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.56104 * 180.02562 * 9 8 4 33 33 H 1.08996 * 109.47408 * 299.99852 * 14 13 11 34 34 H 1.09000 * 109.47662 * 60.00431 * 14 13 11 35 35 H 1.09003 * 109.46827 * 60.00215 * 16 15 14 36 36 H 1.08998 * 109.47485 * 179.97438 * 16 15 14 37 37 H 1.09000 * 109.47356 * 300.00296 * 16 15 14 38 38 H 1.09004 * 109.47202 * 59.99885 * 17 15 14 39 39 H 1.08994 * 109.47195 * 179.97438 * 17 15 14 40 40 H 1.08993 * 109.47093 * 299.99803 * 17 15 14 41 41 H 1.09004 * 109.47199 * 299.99851 * 18 15 14 42 42 H 1.08996 * 109.47279 * 60.00631 * 18 15 14 43 43 H 0.97004 * 119.99621 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1339 0.0000 4 6 3.5022 1.1621 -0.0058 5 6 4.4126 2.2083 -0.0126 6 6 5.6874 1.6578 -0.0158 7 7 5.5875 0.3488 -0.0119 8 7 4.2321 -0.0005 -0.0057 9 6 3.5955 -1.2028 0.0008 10 6 2.2143 -1.2266 0.0067 11 6 1.4877 -2.5098 0.0132 12 8 0.2784 -2.5225 0.1314 13 8 2.1652 -3.6684 -0.1062 14 6 1.3850 -4.8928 -0.0912 15 6 2.3199 -6.0951 -0.2377 16 6 3.0807 -5.9913 -1.5610 17 6 3.3161 -6.1109 0.9235 18 6 1.4977 -7.3853 -0.2225 19 6 2.4187 -8.5695 -0.3661 20 1 3.4839 -8.4172 -0.4585 21 6 1.9013 -9.8475 -0.3796 22 7 0.6042 -10.0330 -0.2666 23 14 3.0428 -11.3154 -0.5568 24 1 4.0081 -11.3309 0.5716 25 1 2.2449 -12.5677 -0.5423 26 1 3.7832 -11.2146 -1.8402 27 1 -0.3633 -0.1089 1.0219 28 1 -0.3633 0.9394 -0.4168 29 1 -0.3633 -0.8306 -0.6052 30 1 4.1733 3.2615 -0.0141 31 1 6.6119 2.2163 -0.0208 32 1 4.1605 -2.1233 0.0013 33 1 0.8426 -4.9665 0.8513 34 1 0.6756 -4.8818 -0.9187 35 1 3.6664 -5.0721 -1.5722 36 1 3.7471 -6.8476 -1.6651 37 1 2.3710 -5.9801 -2.3882 38 1 2.7740 -6.1848 1.8663 39 1 3.9818 -6.9676 0.8194 40 1 3.9018 -5.1917 0.9123 41 1 0.9553 -7.4595 0.7201 42 1 0.7884 -7.3738 -1.0500 43 1 0.2402 -10.9322 -0.2764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835387320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:34 Heat of formation + Delta-G solvation = 3.760226 kcal Electronic energy + Delta-G solvation = -26067.295265 eV Core-core repulsion = 22306.998257 eV Total energy + Delta-G solvation = -3760.297008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.52845 -41.63043 -39.50198 -38.51664 -36.98011 -35.46569 -34.39267 -33.24039 -31.09314 -29.29230 -29.13363 -27.94409 -27.93296 -26.07606 -25.00500 -23.86790 -22.75260 -22.25626 -20.00907 -19.97816 -18.79607 -18.36626 -17.95505 -17.72127 -17.08496 -17.02757 -16.52110 -16.36348 -15.38644 -15.28285 -15.19243 -14.83687 -14.73862 -14.60575 -14.07849 -14.00436 -13.93971 -13.78473 -13.34921 -12.95886 -12.88226 -12.76025 -12.66038 -12.48521 -12.44966 -12.29596 -12.23852 -11.98759 -11.84992 -11.57960 -11.35061 -11.16052 -10.97148 -10.87270 -10.69412 -10.50494 -9.12695 -8.14765 -6.21838 -0.94462 -0.57318 0.74054 1.11826 1.39117 1.44338 1.44717 1.52268 1.62448 2.20034 2.44446 2.60415 2.87511 3.05022 3.20181 3.47108 3.71155 3.92494 3.97601 4.00367 4.13248 4.25261 4.28754 4.52777 4.57239 4.62705 4.67787 4.71024 4.74330 4.88083 5.02414 5.06864 5.08160 5.15015 5.19341 5.40224 5.44132 5.44555 5.49062 5.53053 5.54897 5.76990 5.89117 6.20976 6.29436 6.41274 6.54591 6.92065 7.45663 8.97445 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.002717 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.908642 B =10304.839968 C =11306.164994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.254 3.746 3 N -0.486 5.486 4 C 0.236 3.764 5 C -0.260 4.260 6 C 0.115 3.885 7 N -0.332 5.332 8 N -0.335 5.335 9 C 0.255 3.745 10 C -0.238 4.238 11 C 0.528 3.472 12 O -0.509 6.509 13 O -0.342 6.342 14 C 0.092 3.908 15 C -0.055 4.055 16 C -0.121 4.121 17 C -0.121 4.121 18 C 0.040 3.960 19 C -0.515 4.515 20 H 0.070 0.930 21 C -0.002 4.002 22 N -0.936 5.936 23 Si 0.956 3.044 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.268 1.268 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.188 0.812 31 H 0.247 0.753 32 H 0.215 0.785 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.068 0.932 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 24.525 0.423 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.090 3.910 3 N -0.199 5.199 4 C 0.013 3.987 5 C -0.290 4.290 6 C -0.064 4.064 7 N -0.155 5.155 8 N -0.105 5.105 9 C 0.117 3.883 10 C -0.246 4.246 11 C 0.372 3.628 12 O -0.399 6.399 13 O -0.258 6.258 14 C 0.019 3.981 15 C -0.055 4.055 16 C -0.178 4.178 17 C -0.179 4.179 18 C 0.003 3.997 19 C -0.553 4.553 20 H 0.088 0.912 21 C -0.199 4.199 22 N -0.577 5.577 23 Si 0.781 3.219 24 H -0.193 1.193 25 H -0.216 1.216 26 H -0.193 1.193 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.205 0.795 31 H 0.263 0.737 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.757 24.234 0.464 25.449 hybrid contribution -0.213 -1.363 -0.018 1.380 sum 7.544 22.871 0.446 24.087 Atomic orbital electron populations 1.21142 0.84756 1.05242 1.05356 1.22199 0.98916 0.85164 0.84768 1.68158 1.04071 1.27698 1.19981 1.21390 0.88616 0.87996 1.00685 1.21532 0.89499 0.99569 1.18357 1.24797 1.00403 0.90037 0.91204 1.77979 0.88581 1.17300 1.31600 1.47370 1.08266 1.06211 1.48702 1.23052 0.91853 0.89612 0.83752 1.19546 0.91994 0.93231 1.19849 1.20243 0.85573 0.83872 0.73078 1.90834 1.15073 1.87644 1.46341 1.86470 1.41799 1.14673 1.82889 1.23231 0.93398 0.79485 1.02007 1.20633 0.95712 0.91679 0.97471 1.21665 0.99666 1.01456 0.95054 1.21667 0.98435 1.01554 0.96205 1.18984 0.94431 0.91395 0.94929 1.21517 0.94218 0.91132 1.48428 0.91156 1.25887 0.96316 1.02207 0.95474 1.70096 1.13070 1.22405 1.52152 0.85637 0.78796 0.78322 0.79131 1.19269 1.21591 1.19261 0.88149 0.88725 0.88215 0.79527 0.73730 0.76793 0.91593 0.91584 0.91423 0.92809 0.94143 0.94130 0.92810 0.91346 0.98945 0.98933 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 8.93 71.24 0.64 -1.38 16 2 C 0.25 5.63 6.87 43.53 0.30 5.93 16 3 N -0.49 -11.33 10.37 -179.72 -1.86 -13.19 16 4 C 0.24 5.30 7.91 133.00 1.05 6.35 16 5 C -0.26 -4.24 10.91 22.53 0.25 -4.00 16 6 C 0.12 1.57 11.95 84.92 1.01 2.59 16 7 N -0.33 -6.81 12.65 -57.44 -0.73 -7.53 16 8 N -0.34 -7.44 3.88 -190.81 -0.74 -8.18 16 9 C 0.26 5.20 10.92 84.02 0.92 6.12 16 10 C -0.24 -5.30 5.88 -20.04 -0.12 -5.42 16 11 C 0.53 13.68 7.83 70.25 0.55 14.23 16 12 O -0.51 -14.97 13.24 19.80 0.26 -14.70 16 13 O -0.34 -9.31 8.17 -56.58 -0.46 -9.77 16 14 C 0.09 3.02 4.33 71.98 0.31 3.34 16 15 C -0.05 -2.03 0.61 -52.18 -0.03 -2.07 16 16 C -0.12 -4.14 8.08 71.98 0.58 -3.56 16 17 C -0.12 -4.13 8.08 71.98 0.58 -3.55 16 18 C 0.04 1.95 4.04 29.85 0.12 2.07 16 19 C -0.51 -27.09 7.65 25.60 0.20 -26.89 16 20 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.94 -55.63 13.29 21.45 0.28 -55.35 16 23 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 2.08 5.91 -2.39 -0.01 2.06 16 30 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.25 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.22 3.44 7.65 -2.91 -0.02 3.42 16 33 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 1.90 7.68 -2.39 -0.02 1.88 16 36 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 40 H 0.07 1.90 7.68 -2.39 -0.02 1.88 16 41 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -67.33 359.29 6.62 -60.70 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.03 Total: 8.85 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 6.82 Total: -5.85 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.05 Total: -84.25 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.20 Total: -24.47 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.33 6.62 -60.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835387320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.462 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds