Wall clock time and date at job start Tue Mar 31 2020 11:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34477 * 125.45818 * 2 1 4 4 C 1.46740 * 106.39952 * 180.13623 * 3 2 1 5 5 C 1.47062 * 127.01868 * 179.86324 * 4 3 2 6 6 O 1.21549 * 120.00414 * 179.68548 * 5 4 3 7 7 O 1.34796 * 119.99632 * 359.68839 * 5 4 3 8 8 C 1.45206 * 116.99752 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46953 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99769 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46819 * 59.99744 * 14 12 10 16 16 H 1.48494 * 109.47285 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47196 * 300.00241 * 14 12 10 18 18 C 1.37948 * 105.96614 * 359.60368 * 4 3 2 19 19 C 1.50695 * 125.90647 * 180.23517 * 18 4 3 20 20 N 1.34719 * 108.19161 * 0.24339 * 18 4 3 21 21 C 1.40786 * 124.82420 * 180.02562 * 20 18 4 22 22 C 1.40293 * 126.10936 * 65.01138 * 21 20 18 23 23 N 1.30824 * 108.19839 * 180.02562 * 22 21 20 24 24 N 1.40055 * 108.34735 * 0.02562 * 23 22 21 25 25 C 1.46496 * 125.99568 * 180.02562 * 24 23 22 26 26 C 1.35167 * 108.00613 * 359.74067 * 24 23 22 27 27 H 1.08996 * 109.47331 * 270.31239 * 1 2 3 28 28 H 1.09004 * 109.47173 * 30.31006 * 1 2 3 29 29 H 1.08999 * 109.47150 * 150.30477 * 1 2 3 30 30 H 1.08001 * 126.80226 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47070 * 299.99996 * 8 7 5 32 32 H 1.09001 * 109.46626 * 60.00014 * 8 7 5 33 33 H 1.09000 * 109.47486 * 299.99948 * 9 8 7 34 34 H 1.09001 * 109.47362 * 60.00671 * 9 8 7 35 35 H 0.97000 * 120.00540 * 180.02562 * 13 12 10 36 36 H 1.09011 * 109.46980 * 89.97325 * 19 18 4 37 37 H 1.08998 * 109.48042 * 209.97862 * 19 18 4 38 38 H 1.09003 * 109.47225 * 329.98515 * 19 18 4 39 39 H 1.07996 * 125.90039 * 0.03236 * 22 21 20 40 40 H 1.09004 * 109.46852 * 89.98319 * 25 24 23 41 41 H 1.09003 * 109.47532 * 209.97993 * 25 24 23 42 42 H 1.08998 * 109.47629 * 329.98069 * 25 24 23 43 43 H 1.07996 * 126.17004 * 180.26062 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2871 1.0954 0.0000 4 6 3.6741 0.6162 -0.0033 5 6 4.8944 1.4369 -0.0074 6 8 5.9862 0.9027 -0.0041 7 8 4.8021 2.7817 -0.0147 8 6 6.0477 3.5279 -0.0177 9 6 5.7438 5.0274 -0.0266 10 6 7.0366 5.8019 -0.0304 11 1 7.9805 5.2771 -0.0272 12 6 7.0144 7.1805 -0.0379 13 7 5.8650 7.8195 -0.0423 14 14 8.6169 8.1405 -0.0419 15 1 9.4022 7.7877 -1.2519 16 1 8.3220 9.5958 -0.0507 17 1 9.4003 7.8009 1.1730 18 6 3.5997 -0.7612 0.0041 19 6 4.7708 -1.7095 0.0091 20 7 2.2990 -1.1122 0.0059 21 6 1.8239 -2.4374 0.0135 22 6 1.9954 -3.3713 1.0463 23 7 1.4158 -4.4880 0.6878 24 7 0.8563 -4.3061 -0.5832 25 6 0.1157 -5.3110 -1.3498 26 6 1.1141 -3.0386 -0.9756 27 1 -0.3634 0.0056 1.0276 28 1 -0.3634 0.8872 -0.5187 29 1 -0.3633 -0.8927 -0.5091 30 1 1.9581 2.1240 0.0004 31 1 6.6228 3.2786 0.8741 32 1 6.6241 3.2690 -0.9059 33 1 5.1690 5.2764 -0.9186 34 1 5.1673 5.2866 0.8614 35 1 5.8493 8.7894 -0.0480 36 1 5.0536 -1.9323 1.0380 37 1 4.4932 -2.6328 -0.4994 38 1 5.6132 -1.2494 -0.5076 39 1 2.5158 -3.1982 1.9766 40 1 -0.9450 -5.2433 -1.1081 41 1 0.2577 -5.1323 -2.4157 42 1 0.4834 -6.3053 -1.0960 43 1 0.8121 -2.5864 -1.9087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850135018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:56 Heat of formation + Delta-G solvation = 33.149457 kcal Electronic energy + Delta-G solvation = -25385.938954 eV Core-core repulsion = 21626.916359 eV Total energy + Delta-G solvation = -3759.022595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30371 -40.91901 -39.20178 -35.76781 -34.17574 -33.22868 -32.70870 -32.48077 -30.22989 -29.47452 -29.18087 -27.03177 -25.47316 -24.51203 -22.94367 -21.94138 -21.47935 -20.74016 -19.95136 -19.01383 -17.35001 -16.95810 -16.24688 -16.12460 -15.73153 -15.65811 -15.29350 -15.18876 -14.70662 -14.40855 -13.94447 -13.66981 -13.40912 -13.34056 -13.25425 -13.14488 -12.90053 -12.65751 -12.47180 -12.26447 -12.22846 -12.12495 -11.46446 -11.39010 -11.08825 -10.92061 -10.60236 -10.59088 -10.09798 -9.98158 -9.49968 -9.46285 -9.40723 -9.20592 -8.48748 -8.35218 -7.99392 -6.01851 -4.05517 1.11187 1.64628 1.72616 2.04347 2.39796 2.68417 3.35919 3.39199 3.41743 3.66404 3.69029 3.97139 4.18096 4.46559 4.47751 4.53461 4.68970 4.78238 4.80458 4.93869 5.05291 5.12169 5.24000 5.34373 5.41652 5.54888 5.58053 5.65437 5.71035 5.83499 5.97911 6.02439 6.20494 6.23507 6.26896 6.35432 6.78799 6.81511 6.95250 7.06492 7.26506 7.30965 7.68670 7.75635 7.98018 8.32881 8.57936 9.00031 9.58045 11.09696 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034078 B = 0.002218 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.454159 B =12619.952404 C =13181.559789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.002 3.998 3 C -0.132 4.132 4 C -0.213 4.213 5 C 0.535 3.465 6 O -0.532 6.532 7 O -0.352 6.352 8 C 0.077 3.923 9 C 0.025 3.975 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.117 3.883 19 C -0.091 4.091 20 N -0.361 5.361 21 C -0.038 4.038 22 C 0.068 3.932 23 N -0.280 5.280 24 N -0.367 5.367 25 C 0.101 3.899 26 C 0.078 3.922 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.156 0.844 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.191 0.809 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 -27.084 -2.618 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C -0.155 4.155 4 C -0.221 4.221 5 C 0.381 3.619 6 O -0.424 6.424 7 O -0.268 6.268 8 C 0.004 3.996 9 C -0.012 4.012 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C 0.002 3.998 19 C -0.148 4.148 20 N -0.035 5.035 21 C -0.140 4.140 22 C -0.119 4.119 23 N -0.101 5.101 24 N -0.148 5.148 25 C -0.040 4.040 26 C -0.071 4.071 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.174 0.826 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.208 0.792 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.209 -28.627 -2.381 32.984 hybrid contribution 1.097 1.511 -0.242 1.883 sum -15.112 -27.116 -2.623 31.154 Atomic orbital electron populations 1.20271 0.87897 1.02767 1.02629 1.20261 0.93556 0.84723 1.11784 1.21944 0.90332 0.97990 1.05221 1.19489 0.92094 0.90707 1.19857 1.20013 0.87584 0.81861 0.72430 1.90746 1.29391 1.73992 1.48265 1.86593 1.39301 1.17798 1.83067 1.23564 0.81758 0.93501 1.00741 1.19152 0.97925 0.85346 0.98814 1.20969 0.92121 0.91241 1.51912 0.92338 1.24982 0.96526 0.97695 0.95020 1.69968 1.24681 1.08322 1.49959 0.86543 0.83422 0.78638 0.78739 1.20120 1.21198 1.20106 1.20558 0.84266 0.93418 1.01571 1.20542 0.94404 0.96435 1.03443 1.40069 1.04587 1.02146 1.56723 1.17466 1.12368 0.86701 0.97478 1.24066 0.98677 0.89793 0.99396 1.77489 1.15428 1.22267 0.94941 1.48333 1.42701 1.09533 1.14250 1.21992 0.95945 0.91128 0.94904 1.22396 0.99482 0.85653 0.99559 0.91200 0.89910 0.92359 0.82632 0.92498 0.92524 0.95396 0.95377 0.92755 0.90371 0.91975 0.88089 0.79207 0.90148 0.88973 0.88689 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.04 36.01 0.36 -0.29 16 2 C 0.00 0.02 6.82 -81.83 -0.56 -0.53 16 3 C -0.13 -1.92 10.89 -37.48 -0.41 -2.33 16 4 C -0.21 -3.58 6.33 -102.99 -0.65 -4.23 16 5 C 0.53 10.81 7.95 34.31 0.27 11.08 16 6 O -0.53 -11.39 14.67 -19.30 -0.28 -11.67 16 7 O -0.35 -7.81 10.12 -40.75 -0.41 -8.22 16 8 C 0.08 1.84 5.42 37.16 0.20 2.04 16 9 C 0.02 0.68 5.35 -27.88 -0.15 0.53 16 10 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.12 1.64 6.90 -81.43 -0.56 1.08 16 19 C -0.09 -1.11 9.53 36.00 0.34 -0.76 16 20 N -0.36 -4.26 2.92 -52.56 -0.15 -4.42 16 21 C -0.04 -0.36 4.93 -83.85 -0.41 -0.78 16 22 C 0.07 0.62 12.04 -17.21 -0.21 0.42 16 23 N -0.28 -2.58 12.56 30.71 0.39 -2.19 16 24 N -0.37 -2.47 4.02 -67.98 -0.27 -2.75 16 25 C 0.10 0.24 11.47 59.84 0.69 0.93 16 26 C 0.08 0.56 10.57 -16.96 -0.18 0.38 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.40 6.94 -51.93 -0.36 0.04 16 30 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 38 H 0.10 1.41 6.52 -51.93 -0.34 1.08 16 39 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -35.64 374.08 -7.20 -42.84 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -6.14 Total: -3.52 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.68 Total: -6.35 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.70 Total: -35.57 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.70 Total: -19.90 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.64 -7.20 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850135018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.985 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds