Wall clock time and date at job start Tue Mar 31 2020 11:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34477 * 125.45818 * 2 1 4 4 C 1.46740 * 106.39952 * 180.13623 * 3 2 1 5 5 C 1.47062 * 127.01868 * 179.86324 * 4 3 2 6 6 O 1.21549 * 120.00414 * 179.68548 * 5 4 3 7 7 O 1.34796 * 119.99632 * 359.68839 * 5 4 3 8 8 C 1.45206 * 116.99752 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46953 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99769 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46819 * 59.99744 * 14 12 10 16 16 H 1.48494 * 109.47285 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47196 * 300.00241 * 14 12 10 18 18 C 1.37948 * 105.96614 * 359.60368 * 4 3 2 19 19 C 1.50695 * 125.90647 * 180.23517 * 18 4 3 20 20 N 1.34719 * 108.19161 * 0.24339 * 18 4 3 21 21 C 1.40786 * 124.82420 * 180.02562 * 20 18 4 22 22 C 1.40293 * 126.10936 * 65.01138 * 21 20 18 23 23 N 1.30824 * 108.19839 * 180.02562 * 22 21 20 24 24 N 1.40055 * 108.34735 * 0.02562 * 23 22 21 25 25 C 1.46496 * 125.99568 * 180.02562 * 24 23 22 26 26 C 1.35167 * 108.00613 * 359.74067 * 24 23 22 27 27 H 1.08996 * 109.47331 * 270.31239 * 1 2 3 28 28 H 1.09004 * 109.47173 * 30.31006 * 1 2 3 29 29 H 1.08999 * 109.47150 * 150.30477 * 1 2 3 30 30 H 1.08001 * 126.80226 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47070 * 299.99996 * 8 7 5 32 32 H 1.09001 * 109.46626 * 60.00014 * 8 7 5 33 33 H 1.09000 * 109.47486 * 299.99948 * 9 8 7 34 34 H 1.09001 * 109.47362 * 60.00671 * 9 8 7 35 35 H 0.97000 * 120.00540 * 180.02562 * 13 12 10 36 36 H 1.09011 * 109.46980 * 89.97325 * 19 18 4 37 37 H 1.08998 * 109.48042 * 209.97862 * 19 18 4 38 38 H 1.09003 * 109.47225 * 329.98515 * 19 18 4 39 39 H 1.07996 * 125.90039 * 0.03236 * 22 21 20 40 40 H 1.09004 * 109.46852 * 89.98319 * 25 24 23 41 41 H 1.09003 * 109.47532 * 209.97993 * 25 24 23 42 42 H 1.08998 * 109.47629 * 329.98069 * 25 24 23 43 43 H 1.07996 * 126.17004 * 180.26062 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2871 1.0954 0.0000 4 6 3.6741 0.6162 -0.0033 5 6 4.8944 1.4369 -0.0074 6 8 5.9862 0.9027 -0.0041 7 8 4.8021 2.7817 -0.0147 8 6 6.0477 3.5279 -0.0177 9 6 5.7438 5.0274 -0.0266 10 6 7.0366 5.8019 -0.0304 11 1 7.9805 5.2771 -0.0272 12 6 7.0144 7.1805 -0.0379 13 7 5.8650 7.8195 -0.0423 14 14 8.6169 8.1405 -0.0419 15 1 9.4022 7.7877 -1.2519 16 1 8.3220 9.5958 -0.0507 17 1 9.4003 7.8009 1.1730 18 6 3.5997 -0.7612 0.0041 19 6 4.7708 -1.7095 0.0091 20 7 2.2990 -1.1122 0.0059 21 6 1.8239 -2.4374 0.0135 22 6 1.9954 -3.3713 1.0463 23 7 1.4158 -4.4880 0.6878 24 7 0.8563 -4.3061 -0.5832 25 6 0.1157 -5.3110 -1.3498 26 6 1.1141 -3.0386 -0.9756 27 1 -0.3634 0.0056 1.0276 28 1 -0.3634 0.8872 -0.5187 29 1 -0.3633 -0.8927 -0.5091 30 1 1.9581 2.1240 0.0004 31 1 6.6228 3.2786 0.8741 32 1 6.6241 3.2690 -0.9059 33 1 5.1690 5.2764 -0.9186 34 1 5.1673 5.2866 0.8614 35 1 5.8493 8.7894 -0.0480 36 1 5.0536 -1.9323 1.0380 37 1 4.4932 -2.6328 -0.4994 38 1 5.6132 -1.2494 -0.5076 39 1 2.5158 -3.1982 1.9766 40 1 -0.9450 -5.2433 -1.1081 41 1 0.2577 -5.1323 -2.4157 42 1 0.4834 -6.3053 -1.0960 43 1 0.8121 -2.5864 -1.9087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850135018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:56 Heat of formation + Delta-G solvation = 12.663210 kcal Electronic energy + Delta-G solvation = -25386.827305 eV Core-core repulsion = 21626.916359 eV Total energy + Delta-G solvation = -3759.910945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.09370 -41.80366 -40.80452 -37.49841 -35.41212 -34.76405 -33.67627 -33.28625 -32.26495 -30.22241 -30.07628 -27.73526 -27.04708 -25.93973 -24.13777 -22.83180 -22.59342 -22.20612 -21.17449 -19.97413 -18.80946 -18.20627 -17.70745 -17.40245 -17.16464 -16.71296 -16.53342 -16.19381 -16.12800 -15.35745 -14.90422 -14.81920 -14.52120 -14.32650 -14.20084 -14.11349 -14.07760 -13.60655 -13.53752 -13.45056 -13.09677 -13.06886 -13.00145 -12.90054 -12.59307 -12.53422 -12.41369 -12.03255 -11.79137 -11.48341 -11.40234 -11.26345 -10.65055 -10.58885 -10.23386 -9.40377 -9.04495 -8.24548 -6.38038 0.34944 0.62448 1.17325 1.21380 1.41788 1.46317 1.47039 1.54093 1.74380 2.16120 2.26701 2.44313 3.09092 3.46804 3.69366 3.79089 3.83431 4.03286 4.08118 4.17325 4.26492 4.33194 4.43689 4.43948 4.52264 4.55041 4.63771 4.64373 4.72684 4.72991 4.79344 4.90416 4.98191 5.08705 5.14274 5.20838 5.34892 5.49064 5.61396 5.71133 5.77462 5.79069 6.02061 6.09212 6.36107 6.42820 6.74381 6.94019 7.31182 8.88066 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034078 B = 0.002218 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.454159 B =12619.952404 C =13181.559789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 C -0.161 4.161 4 C -0.256 4.256 5 C 0.530 3.470 6 O -0.552 6.552 7 O -0.363 6.363 8 C 0.093 3.907 9 C 0.033 3.967 10 C -0.551 4.551 11 H 0.065 0.935 12 C 0.004 3.996 13 N -0.927 5.927 14 Si 0.976 3.024 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.266 1.266 18 C 0.127 3.873 19 C -0.086 4.086 20 N -0.348 5.348 21 C -0.073 4.073 22 C 0.064 3.936 23 N -0.304 5.304 24 N -0.359 5.359 25 C 0.090 3.910 26 C 0.098 3.902 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.005 0.995 34 H 0.005 0.995 35 H 0.268 0.732 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.195 0.805 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.962 -29.020 -3.404 33.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.184 4.184 4 C -0.264 4.264 5 C 0.379 3.621 6 O -0.445 6.445 7 O -0.280 6.280 8 C 0.019 3.981 9 C -0.005 4.005 10 C -0.588 4.588 11 H 0.083 0.917 12 C -0.194 4.194 13 N -0.566 5.566 14 Si 0.799 3.201 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.191 1.191 18 C 0.009 3.991 19 C -0.143 4.143 20 N -0.020 5.020 21 C -0.174 4.174 22 C -0.123 4.123 23 N -0.126 5.126 24 N -0.140 5.140 25 C -0.049 4.049 26 C -0.053 4.053 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.168 0.832 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.212 0.788 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -17.257 -30.620 -3.165 35.290 hybrid contribution 1.237 1.921 -0.032 2.285 sum -16.021 -28.698 -3.197 33.022 Atomic orbital electron populations 1.20402 0.84898 1.04395 1.03614 1.20736 0.95131 0.83853 1.08723 1.21984 0.89919 0.98855 1.07613 1.19449 0.91558 0.91756 1.23624 1.20615 0.88813 0.80963 0.71743 1.90715 1.30374 1.73846 1.49591 1.86581 1.38224 1.19391 1.83771 1.23123 0.82441 0.91769 1.00739 1.18964 0.97138 0.87803 0.96545 1.21345 0.92729 0.92159 1.52602 0.91683 1.26003 1.00648 0.98734 0.94060 1.70098 1.27240 1.08917 1.50311 0.85341 0.78414 0.77006 0.79317 1.19014 1.20344 1.19053 1.20725 0.85819 0.92585 0.99938 1.20513 0.93041 0.96671 1.04048 1.40122 1.03690 1.03348 1.54869 1.17650 1.14878 0.85752 0.99114 1.24170 0.98739 0.89718 0.99695 1.77469 1.16246 1.22402 0.96435 1.48741 1.41680 1.10057 1.13488 1.22411 0.96321 0.90282 0.95925 1.22772 0.97415 0.85478 0.99606 0.90429 0.88748 0.90232 0.83170 0.92447 0.92400 0.97618 0.97670 0.92326 0.89384 0.89747 0.90171 0.78809 0.88579 0.86254 0.88424 0.77099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.04 71.24 0.71 -0.34 16 2 C 0.02 0.49 6.82 40.97 0.28 0.77 16 3 C -0.16 -4.79 10.89 23.63 0.26 -4.54 16 4 C -0.26 -8.87 6.33 -18.81 -0.12 -8.99 16 5 C 0.53 22.47 7.95 70.14 0.56 23.02 16 6 O -0.55 -24.61 14.67 19.68 0.29 -24.32 16 7 O -0.36 -17.04 10.12 -57.08 -0.58 -17.61 16 8 C 0.09 4.61 5.42 71.98 0.39 5.00 16 9 C 0.03 1.87 5.35 29.85 0.16 2.03 16 10 C -0.55 -32.63 9.11 25.60 0.23 -32.40 16 11 H 0.06 3.68 7.74 -2.91 -0.02 3.66 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 14 Si 0.98 44.91 29.54 68.60 2.03 46.94 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.13 3.53 6.90 42.05 0.29 3.82 16 19 C -0.09 -2.04 9.53 71.23 0.68 -1.36 16 20 N -0.35 -7.70 2.92 -320.20 -0.94 -8.64 16 21 C -0.07 -1.21 4.93 37.63 0.19 -1.02 16 22 C 0.06 1.05 12.04 85.34 1.03 2.08 16 23 N -0.30 -4.93 12.56 -56.75 -0.71 -5.64 16 24 N -0.36 -3.66 4.02 -369.00 -1.48 -5.14 16 25 C 0.09 0.10 11.47 127.77 1.47 1.56 16 26 C 0.10 1.04 10.57 83.61 0.88 1.93 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 0.79 6.94 -2.39 -0.02 0.77 16 30 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.00 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.08 1.61 7.75 -2.39 -0.02 1.59 16 38 H 0.08 2.29 6.52 -2.39 -0.02 2.27 16 39 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.10 -0.13 8.14 -2.38 -0.02 -0.15 16 41 H 0.12 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -79.38 374.08 7.37 -72.01 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.01 Total: 6.96 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 7.47 Total: -7.72 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -2.85 Total: -76.24 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.29 Total: -41.94 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -79.38 7.37 -72.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850135018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.672 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds