Wall clock time and date at job start Tue Mar 31 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34485 * 125.46007 * 2 1 4 4 C 1.46735 * 106.39910 * 179.73273 * 3 2 1 5 5 C 1.47070 * 127.01502 * 179.97438 * 4 3 2 6 6 O 1.21553 * 120.00027 * 180.02562 * 5 4 3 7 7 O 1.34800 * 119.99634 * 0.02764 * 5 4 3 8 8 C 1.45199 * 116.99630 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47055 * 29.99848 * 8 7 5 10 10 C 1.53004 * 109.47180 * 269.99864 * 8 7 5 11 11 C 1.50698 * 109.47082 * 149.99901 * 8 7 5 12 12 H 1.08005 * 119.99834 * 359.97438 * 11 8 7 13 13 C 1.37880 * 120.00211 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99781 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00066 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46959 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47249 * 119.99775 * 15 13 11 18 18 H 1.48494 * 109.46909 * 239.99718 * 15 13 11 19 19 C 1.37950 * 105.97067 * 359.97438 * 4 3 2 20 20 C 1.50694 * 125.90271 * 180.02562 * 19 4 3 21 21 N 1.34713 * 108.19191 * 359.97438 * 19 4 3 22 22 C 1.40789 * 124.82714 * 179.97438 * 21 19 4 23 23 C 1.40286 * 126.10656 * 295.05709 * 22 21 19 24 24 N 1.30825 * 108.19870 * 179.97438 * 23 22 21 25 25 N 1.40056 * 108.34574 * 359.97438 * 24 23 22 26 26 C 1.46501 * 125.99673 * 180.02562 * 25 24 23 27 27 C 1.35162 * 108.00483 * 359.73667 * 25 24 23 28 28 H 1.09007 * 109.46888 * 90.02523 * 1 2 3 29 29 H 1.08997 * 109.47516 * 210.02567 * 1 2 3 30 30 H 1.09000 * 109.46918 * 330.02939 * 1 2 3 31 31 H 1.07997 * 126.79492 * 359.69459 * 3 2 1 32 32 H 1.09005 * 109.47133 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47114 * 299.99948 * 10 8 7 34 34 H 1.09004 * 109.47014 * 60.00051 * 10 8 7 35 35 H 0.97004 * 120.00026 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47315 * 89.97825 * 20 19 4 37 37 H 1.09003 * 109.46924 * 209.97772 * 20 19 4 38 38 H 1.09002 * 109.47236 * 329.97345 * 20 19 4 39 39 H 1.08002 * 125.90470 * 359.97438 * 23 22 21 40 40 H 1.09001 * 109.47082 * 89.97775 * 26 25 24 41 41 H 1.09001 * 109.47154 * 209.97466 * 26 25 24 42 42 H 1.09003 * 109.47023 * 329.97713 * 26 25 24 43 43 H 1.07997 * 126.16898 * 180.28474 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2871 1.0954 0.0000 4 6 3.6740 0.6162 0.0066 5 6 4.8944 1.4370 0.0085 6 8 5.9862 0.9027 0.0136 7 8 4.8020 2.7818 0.0045 8 6 6.0476 3.5280 0.0072 9 1 6.8186 2.9499 -0.5021 10 6 6.4796 3.7940 1.4507 11 6 5.8489 4.8398 -0.7075 12 1 4.8832 5.0876 -1.1227 13 6 6.9003 5.7230 -0.8323 14 7 8.0764 5.4210 -0.3272 15 14 6.6538 7.3493 -1.7177 16 1 5.2492 7.4481 -2.1895 17 1 6.9434 8.4690 -0.7861 18 1 7.5729 7.4235 -2.8816 19 6 3.5996 -0.7613 0.0106 20 6 4.7709 -1.7095 0.0184 21 7 2.2990 -1.1122 0.0075 22 6 1.8239 -2.4375 0.0096 23 6 1.9999 -3.3805 -1.0141 24 7 1.4187 -4.4940 -0.6483 25 7 0.8536 -4.3007 0.6186 26 6 0.1105 -5.2992 1.3914 27 6 1.1197 -3.0334 1.0059 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 1.9580 2.1240 -0.0046 32 1 7.4145 4.3546 1.4528 33 1 5.7086 4.3722 1.9600 34 1 6.6233 2.8452 1.9677 35 1 8.8159 6.0425 -0.4147 36 1 5.0493 -1.9346 1.0479 37 1 4.4952 -2.6316 -0.4933 38 1 5.6152 -1.2482 -0.4939 39 1 2.5245 -3.2157 -1.9436 40 1 0.8017 -5.8596 2.0209 41 1 -0.6271 -4.7982 2.0183 42 1 -0.3960 -5.9827 0.7099 43 1 0.8233 -2.5764 1.9384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:59 Heat of formation + Delta-G solvation = 39.134635 kcal Electronic energy + Delta-G solvation = -26019.698012 eV Core-core repulsion = 22260.934953 eV Total energy + Delta-G solvation = -3758.763058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.17666 -40.75394 -38.79563 -35.40426 -34.07415 -33.10069 -32.53652 -32.32465 -29.69568 -29.22496 -28.97031 -26.87329 -25.21585 -24.88487 -23.04172 -21.83377 -21.53137 -20.64299 -19.51220 -18.68902 -17.18224 -16.71729 -16.32622 -16.02000 -15.66025 -15.32344 -15.00150 -14.68385 -14.36553 -14.26749 -13.82251 -13.53536 -13.27600 -13.17876 -13.13597 -13.02120 -12.78353 -12.37275 -12.17812 -12.04113 -11.98468 -11.67587 -11.32064 -11.20426 -11.06594 -10.97533 -10.69625 -10.21596 -10.17238 -9.99848 -9.42338 -9.34052 -9.26438 -8.73557 -8.38651 -8.31003 -7.81281 -6.07424 -4.12927 1.21757 1.82319 1.84315 2.19662 2.57337 2.85127 3.30853 3.37328 3.43192 4.02510 4.06713 4.09368 4.27656 4.47776 4.56186 4.60757 4.83046 4.86771 4.95244 5.02830 5.19096 5.23760 5.25681 5.39437 5.50658 5.71351 5.75996 5.84683 5.88700 5.98383 6.15269 6.24404 6.31263 6.50637 6.81004 6.98657 7.03970 7.05948 7.08736 7.23673 7.39821 7.47853 7.73676 7.88946 8.10828 8.30295 8.84739 9.12569 9.52356 11.00247 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028990 B = 0.002678 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.602496 B =10453.925319 C =10894.810237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.001 4.001 3 C -0.132 4.132 4 C -0.206 4.206 5 C 0.530 3.470 6 O -0.533 6.533 7 O -0.351 6.351 8 C 0.215 3.785 9 H 0.046 0.954 10 C -0.154 4.154 11 C -0.515 4.515 12 H 0.069 0.931 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.910 3.090 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.110 3.890 20 C -0.090 4.090 21 N -0.363 5.363 22 C -0.034 4.034 23 C 0.067 3.933 24 N -0.281 5.281 25 N -0.368 5.368 26 C 0.102 3.898 27 C 0.076 3.924 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.191 0.809 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 -20.279 4.130 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.156 4.156 4 C -0.214 4.214 5 C 0.376 3.624 6 O -0.426 6.426 7 O -0.267 6.267 8 C 0.163 3.837 9 H 0.064 0.936 10 C -0.211 4.211 11 C -0.553 4.553 12 H 0.087 0.913 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.737 3.263 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.004 4.004 20 C -0.148 4.148 21 N -0.038 5.038 22 C -0.136 4.136 23 C -0.121 4.121 24 N -0.102 5.102 25 N -0.150 5.150 26 C -0.039 4.039 27 C -0.073 4.073 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.172 0.828 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.208 0.792 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.129 -21.918 3.921 28.713 hybrid contribution 0.280 1.748 -0.103 1.773 sum -17.848 -20.170 3.819 27.203 Atomic orbital electron populations 1.20246 0.88094 1.02586 1.02471 1.20214 0.93395 0.84803 1.12220 1.21922 0.90528 0.97810 1.05313 1.19671 0.92386 0.90748 1.18575 1.19958 0.87210 0.82651 0.72593 1.90719 1.29410 1.74090 1.48385 1.86557 1.41178 1.16808 1.82111 1.20570 0.78947 0.89683 0.94519 0.93639 1.22146 1.03377 0.98849 0.96758 1.21093 0.97768 1.00722 1.35722 0.91306 1.24887 0.94757 0.98756 0.95730 1.69920 1.01308 1.36612 1.45041 0.86245 0.78408 0.82477 0.79151 1.19491 1.20822 1.20855 1.20554 0.84122 0.93550 1.02168 1.20538 0.94597 0.96354 1.03263 1.40046 1.04623 1.01995 1.57168 1.17468 1.12186 0.86710 0.97240 1.24079 0.98784 0.89717 0.99511 1.77474 1.15337 1.22256 0.95136 1.48310 1.42645 1.09603 1.14410 1.21971 0.95762 0.90876 0.95280 1.22379 0.99834 0.85702 0.99356 0.91332 0.92460 0.90088 0.82842 0.88427 0.94575 0.96528 0.92613 0.90728 0.92057 0.87919 0.79192 0.90190 0.89044 0.88788 0.79998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.04 36.00 0.36 -0.35 16 2 C 0.00 -0.01 6.82 -81.82 -0.56 -0.57 16 3 C -0.13 -2.16 10.89 -37.48 -0.41 -2.57 16 4 C -0.21 -3.94 6.33 -102.99 -0.65 -4.59 16 5 C 0.53 12.46 7.92 34.31 0.27 12.73 16 6 O -0.53 -13.39 14.14 -19.31 -0.27 -13.66 16 7 O -0.35 -9.07 9.77 -40.76 -0.40 -9.47 16 8 C 0.22 6.10 2.56 -27.88 -0.07 6.02 16 9 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 10 C -0.15 -4.09 9.33 37.16 0.35 -3.75 16 11 C -0.51 -15.03 8.90 -34.44 -0.31 -15.33 16 12 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -26.05 11.32 55.43 0.63 -25.43 16 15 Si 0.91 21.69 29.54 -169.99 -5.02 16.66 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C 0.11 1.77 6.90 -81.44 -0.56 1.21 16 20 C -0.09 -1.29 9.53 36.00 0.34 -0.94 16 21 N -0.36 -4.86 2.92 -52.56 -0.15 -5.01 16 22 C -0.03 -0.37 5.11 -83.85 -0.43 -0.80 16 23 C 0.07 0.69 11.13 -17.21 -0.19 0.50 16 24 N -0.28 -2.86 12.56 30.71 0.39 -2.48 16 25 N -0.37 -2.84 4.02 -67.98 -0.27 -3.11 16 26 C 0.10 0.32 11.47 59.85 0.69 1.01 16 27 C 0.08 0.62 10.60 -16.97 -0.18 0.44 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.45 6.95 -51.93 -0.36 0.09 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.72 6.96 -51.93 -0.36 0.36 16 38 H 0.10 1.68 6.51 -51.93 -0.34 1.34 16 39 H 0.19 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -35.45 367.50 -6.95 -42.40 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.94 Total: -0.07 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.44 Total: -5.38 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.59 Total: -36.03 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.67 Total: -23.13 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.45 -6.95 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.539 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds