Wall clock time and date at job start Tue Mar 31 2020 11:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34485 * 125.46007 * 2 1 4 4 C 1.46735 * 106.39910 * 179.73273 * 3 2 1 5 5 C 1.47070 * 127.01502 * 179.97438 * 4 3 2 6 6 O 1.21553 * 120.00027 * 180.02562 * 5 4 3 7 7 O 1.34800 * 119.99634 * 0.02764 * 5 4 3 8 8 C 1.45199 * 116.99630 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47055 * 29.99848 * 8 7 5 10 10 C 1.53004 * 109.47180 * 269.99864 * 8 7 5 11 11 C 1.50698 * 109.47082 * 149.99901 * 8 7 5 12 12 H 1.08005 * 119.99834 * 359.97438 * 11 8 7 13 13 C 1.37880 * 120.00211 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99781 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00066 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46959 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47249 * 119.99775 * 15 13 11 18 18 H 1.48494 * 109.46909 * 239.99718 * 15 13 11 19 19 C 1.37950 * 105.97067 * 359.97438 * 4 3 2 20 20 C 1.50694 * 125.90271 * 180.02562 * 19 4 3 21 21 N 1.34713 * 108.19191 * 359.97438 * 19 4 3 22 22 C 1.40789 * 124.82714 * 179.97438 * 21 19 4 23 23 C 1.40286 * 126.10656 * 295.05709 * 22 21 19 24 24 N 1.30825 * 108.19870 * 179.97438 * 23 22 21 25 25 N 1.40056 * 108.34574 * 359.97438 * 24 23 22 26 26 C 1.46501 * 125.99673 * 180.02562 * 25 24 23 27 27 C 1.35162 * 108.00483 * 359.73667 * 25 24 23 28 28 H 1.09007 * 109.46888 * 90.02523 * 1 2 3 29 29 H 1.08997 * 109.47516 * 210.02567 * 1 2 3 30 30 H 1.09000 * 109.46918 * 330.02939 * 1 2 3 31 31 H 1.07997 * 126.79492 * 359.69459 * 3 2 1 32 32 H 1.09005 * 109.47133 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47114 * 299.99948 * 10 8 7 34 34 H 1.09004 * 109.47014 * 60.00051 * 10 8 7 35 35 H 0.97004 * 120.00026 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47315 * 89.97825 * 20 19 4 37 37 H 1.09003 * 109.46924 * 209.97772 * 20 19 4 38 38 H 1.09002 * 109.47236 * 329.97345 * 20 19 4 39 39 H 1.08002 * 125.90470 * 359.97438 * 23 22 21 40 40 H 1.09001 * 109.47082 * 89.97775 * 26 25 24 41 41 H 1.09001 * 109.47154 * 209.97466 * 26 25 24 42 42 H 1.09003 * 109.47023 * 329.97713 * 26 25 24 43 43 H 1.07997 * 126.16898 * 180.28474 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2871 1.0954 0.0000 4 6 3.6740 0.6162 0.0066 5 6 4.8944 1.4370 0.0085 6 8 5.9862 0.9027 0.0136 7 8 4.8020 2.7818 0.0045 8 6 6.0476 3.5280 0.0072 9 1 6.8186 2.9499 -0.5021 10 6 6.4796 3.7940 1.4507 11 6 5.8489 4.8398 -0.7075 12 1 4.8832 5.0876 -1.1227 13 6 6.9003 5.7230 -0.8323 14 7 8.0764 5.4210 -0.3272 15 14 6.6538 7.3493 -1.7177 16 1 5.2492 7.4481 -2.1895 17 1 6.9434 8.4690 -0.7861 18 1 7.5729 7.4235 -2.8816 19 6 3.5996 -0.7613 0.0106 20 6 4.7709 -1.7095 0.0184 21 7 2.2990 -1.1122 0.0075 22 6 1.8239 -2.4375 0.0096 23 6 1.9999 -3.3805 -1.0141 24 7 1.4187 -4.4940 -0.6483 25 7 0.8536 -4.3007 0.6186 26 6 0.1105 -5.2992 1.3914 27 6 1.1197 -3.0334 1.0059 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 1.9580 2.1240 -0.0046 32 1 7.4145 4.3546 1.4528 33 1 5.7086 4.3722 1.9600 34 1 6.6233 2.8452 1.9677 35 1 8.8159 6.0425 -0.4147 36 1 5.0493 -1.9346 1.0479 37 1 4.4952 -2.6316 -0.4933 38 1 5.6152 -1.2482 -0.4939 39 1 2.5245 -3.2157 -1.9436 40 1 0.8017 -5.8596 2.0209 41 1 -0.6271 -4.7982 2.0183 42 1 -0.3960 -5.9827 0.7099 43 1 0.8233 -2.5764 1.9384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:58 Heat of formation + Delta-G solvation = 18.234726 kcal Electronic energy + Delta-G solvation = -26020.604300 eV Core-core repulsion = 22260.934953 eV Total energy + Delta-G solvation = -3759.669346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.07126 -41.76159 -40.66330 -37.39153 -35.27453 -34.74219 -33.64850 -33.24361 -31.65618 -30.16056 -30.03773 -27.54986 -27.40798 -26.18710 -24.40146 -22.86356 -22.55916 -22.06547 -20.90508 -19.96331 -18.63233 -18.41182 -17.71560 -17.22141 -16.82474 -16.58607 -16.48456 -16.05025 -15.93248 -15.31725 -14.86012 -14.72994 -14.35312 -14.25026 -14.12203 -14.00043 -13.75586 -13.61473 -13.53377 -13.43091 -13.15417 -13.05285 -12.96770 -12.85935 -12.77111 -12.45184 -12.33904 -12.11120 -12.03022 -11.51241 -11.24030 -10.92578 -10.63960 -10.57249 -10.18636 -9.38462 -9.01385 -8.25916 -6.42341 0.42174 0.64080 1.20098 1.23961 1.42716 1.44254 1.48760 1.58402 1.83621 2.27979 2.37667 2.55326 3.04279 3.47675 3.70440 3.81647 3.88155 4.08952 4.09359 4.27146 4.43133 4.45610 4.53001 4.54608 4.57701 4.62390 4.68234 4.73078 4.81313 4.82436 4.86782 4.94403 4.98353 5.09887 5.14928 5.19332 5.33408 5.52006 5.67041 5.73301 5.79041 5.96310 6.04260 6.16935 6.37569 6.45526 6.64127 7.12648 7.31776 8.82515 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028990 B = 0.002678 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.602496 B =10453.925319 C =10894.810237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.024 3.976 3 C -0.161 4.161 4 C -0.253 4.253 5 C 0.522 3.478 6 O -0.562 6.562 7 O -0.360 6.360 8 C 0.218 3.782 9 H 0.005 0.995 10 C -0.139 4.139 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.986 3.014 16 H -0.264 1.264 17 H -0.269 1.269 18 H -0.275 1.275 19 C 0.120 3.880 20 C -0.085 4.085 21 N -0.349 5.349 22 C -0.072 4.072 23 C 0.061 3.939 24 N -0.303 5.303 25 N -0.359 5.359 26 C 0.090 3.910 27 C 0.099 3.901 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.021 0.979 35 H 0.271 0.729 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.194 0.806 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.153 -21.391 4.780 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.184 4.184 4 C -0.261 4.261 5 C 0.370 3.630 6 O -0.457 6.457 7 O -0.276 6.276 8 C 0.164 3.836 9 H 0.023 0.977 10 C -0.197 4.197 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.808 3.192 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.200 1.200 19 C 0.003 3.997 20 C -0.142 4.142 21 N -0.021 5.021 22 C -0.173 4.173 23 C -0.126 4.126 24 N -0.124 5.124 25 N -0.140 5.140 26 C -0.049 4.049 27 C -0.052 4.052 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.169 0.831 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.211 0.789 40 H 0.110 0.890 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -21.184 -23.088 4.578 31.667 hybrid contribution 1.126 1.852 -0.255 2.183 sum -20.058 -21.236 4.323 29.529 Atomic orbital electron populations 1.20401 0.84615 1.04466 1.03639 1.20754 0.95164 0.83695 1.08620 1.21965 0.89694 0.98913 1.07825 1.19567 0.91777 0.91857 1.22880 1.20747 0.88670 0.81872 0.71669 1.90682 1.30897 1.74071 1.50034 1.86544 1.39761 1.18463 1.82868 1.20317 0.79048 0.89347 0.94839 0.97719 1.21962 1.02725 0.98909 0.96108 1.21318 0.98199 1.01565 1.37203 0.91673 1.25873 0.94077 1.02541 0.96040 1.70036 1.02115 1.38080 1.45365 0.85098 0.78668 0.77371 0.78016 1.18787 1.19430 1.20040 1.20659 0.85862 0.92575 1.00585 1.20490 0.93197 0.96837 1.03724 1.40097 1.03526 1.03415 1.55094 1.17666 1.14924 0.85652 0.99048 1.24160 0.98958 0.89701 0.99795 1.77457 1.16050 1.22254 0.96669 1.48739 1.41515 1.10092 1.13628 1.22414 0.96387 0.90650 0.95444 1.22764 0.97594 0.85526 0.99324 0.90404 0.90152 0.88598 0.83105 0.89941 0.93687 0.96020 0.91996 0.89914 0.89352 0.90621 0.78945 0.88987 0.85940 0.88293 0.76994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.04 71.23 0.72 -0.41 16 2 C 0.02 0.60 6.82 40.96 0.28 0.88 16 3 C -0.16 -5.33 10.89 23.63 0.26 -5.08 16 4 C -0.25 -10.08 6.33 -18.81 -0.12 -10.20 16 5 C 0.52 26.15 7.92 70.14 0.56 26.71 16 6 O -0.56 -30.30 14.14 19.66 0.28 -30.02 16 7 O -0.36 -19.77 9.77 -57.12 -0.56 -20.33 16 8 C 0.22 13.02 2.56 29.85 0.08 13.10 16 9 H 0.00 0.33 7.16 -2.39 -0.02 0.31 16 10 C -0.14 -7.75 9.33 71.98 0.67 -7.07 16 11 C -0.55 -32.94 8.90 25.60 0.23 -32.71 16 12 H 0.07 3.88 7.81 -2.91 -0.02 3.85 16 13 C 0.01 0.81 5.30 84.66 0.45 1.25 16 14 N -0.92 -54.88 11.32 21.45 0.24 -54.63 16 15 Si 0.99 44.67 29.54 68.60 2.03 46.69 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.12 3.88 6.90 42.05 0.29 4.17 16 20 C -0.09 -2.46 9.53 71.23 0.68 -1.78 16 21 N -0.35 -8.79 2.92 -320.21 -0.94 -9.72 16 22 C -0.07 -1.36 5.11 37.63 0.19 -1.17 16 23 C 0.06 1.14 11.13 85.34 0.95 2.09 16 24 N -0.30 -5.44 12.56 -56.75 -0.71 -6.16 16 25 N -0.36 -4.22 4.02 -368.99 -1.48 -5.70 16 26 C 0.09 0.20 11.47 127.77 1.47 1.67 16 27 C 0.10 1.23 10.60 83.61 0.89 2.11 16 28 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.08 0.88 6.95 -2.39 -0.02 0.87 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.08 4.82 6.07 -2.38 -0.01 4.81 16 33 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.02 1.11 8.14 -2.38 -0.02 1.10 16 35 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 2.01 6.96 -2.39 -0.02 1.99 16 38 H 0.08 2.63 6.51 -2.39 -0.02 2.61 16 39 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -81.18 367.50 7.45 -73.72 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.02 Total: 12.59 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 7.58 Total: -6.45 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -2.89 Total: -76.21 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.28 Total: -50.35 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -81.18 7.45 -73.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.956 kcal (2) G-P(sol) polarization free energy of solvation -81.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds