Wall clock time and date at job start Tue Mar 31 2020 11:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34475 * 125.45608 * 2 1 4 4 C 1.46748 * 106.39642 * 180.15179 * 3 2 1 5 5 C 1.47058 * 127.01596 * 179.83634 * 4 3 2 6 6 O 1.21556 * 119.99857 * 179.68824 * 5 4 3 7 7 O 1.34801 * 119.99919 * 359.68198 * 5 4 3 8 8 C 1.45206 * 116.99461 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.47146 * 329.99282 * 8 7 5 10 10 C 1.52997 * 109.47226 * 90.00255 * 8 7 5 11 11 C 1.50706 * 109.46448 * 210.00047 * 8 7 5 12 12 H 1.07999 * 120.00196 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47363 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 C 1.37950 * 105.96451 * 359.57229 * 4 3 2 20 20 C 1.50700 * 125.89895 * 180.29550 * 19 4 3 21 21 N 1.34716 * 108.19541 * 0.26092 * 19 4 3 22 22 C 1.40784 * 124.82484 * 179.97438 * 21 19 4 23 23 C 1.40294 * 126.10638 * 65.02728 * 22 21 19 24 24 N 1.30826 * 108.20062 * 179.97438 * 23 22 21 25 25 N 1.40062 * 108.34264 * 359.97438 * 24 23 22 26 26 C 1.46503 * 125.99518 * 180.02562 * 25 24 23 27 27 C 1.35159 * 108.00761 * 359.76999 * 25 24 23 28 28 H 1.09004 * 109.47371 * 270.32867 * 1 2 3 29 29 H 1.09008 * 109.47374 * 30.32790 * 1 2 3 30 30 H 1.08997 * 109.47867 * 150.32949 * 1 2 3 31 31 H 1.08002 * 126.80506 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99431 * 10 8 7 33 33 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47261 * 59.99603 * 10 8 7 35 35 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47249 * 89.97945 * 20 19 4 37 37 H 1.08999 * 109.46764 * 209.97385 * 20 19 4 38 38 H 1.08994 * 109.47442 * 329.97356 * 20 19 4 39 39 H 1.08000 * 125.89760 * 359.95877 * 23 22 21 40 40 H 1.08994 * 109.46942 * 89.97074 * 26 25 24 41 41 H 1.09000 * 109.46589 * 209.97431 * 26 25 24 42 42 H 1.09001 * 109.46752 * 329.97282 * 26 25 24 43 43 H 1.08004 * 126.17188 * 180.26414 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2870 1.0954 0.0000 4 6 3.6741 0.6162 -0.0037 5 6 4.8943 1.4369 -0.0085 6 8 5.9861 0.9026 -0.0055 7 8 4.8020 2.7817 -0.0162 8 6 6.0477 3.5279 -0.0211 9 1 6.8169 2.9541 0.4958 10 6 6.4846 3.7816 -1.4652 11 6 5.8465 4.8457 0.6818 12 1 4.8792 5.0974 1.0909 13 6 6.8975 5.7299 0.8027 14 7 8.0753 5.4236 0.3042 15 14 6.6483 7.3630 1.6746 16 1 5.2421 7.4659 2.1407 17 1 7.5641 7.4465 2.8406 18 1 6.9406 8.4754 0.7351 19 6 3.5996 -0.7613 0.0042 20 6 4.7709 -1.7095 0.0104 21 7 2.2990 -1.1123 0.0063 22 6 1.8239 -2.4375 0.0134 23 6 1.9955 -3.3717 1.0459 24 7 1.4150 -4.4880 0.6876 25 7 0.8537 -4.3050 -0.5826 26 6 0.1116 -5.3092 -1.3488 27 6 1.1120 -3.0376 -0.9748 28 1 -0.3634 0.0059 1.0277 29 1 -0.3634 0.8871 -0.5189 30 1 -0.3635 -0.8929 -0.5087 31 1 1.9580 2.1240 -0.0004 32 1 6.6301 2.8285 -1.9736 33 1 7.4194 4.3421 -1.4688 34 1 5.7153 4.3554 -1.9821 35 1 8.8145 6.0459 0.3889 36 1 5.0530 -1.9319 1.0395 37 1 4.4934 -2.6330 -0.4979 38 1 5.6134 -1.2497 -0.5060 39 1 2.5170 -3.1992 1.9758 40 1 -0.9487 -5.2413 -1.1055 41 1 0.2521 -5.1297 -2.4147 42 1 0.4794 -6.3037 -1.0963 43 1 0.8089 -2.5846 -1.9072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:01 Heat of formation + Delta-G solvation = 39.289282 kcal Electronic energy + Delta-G solvation = -26019.098196 eV Core-core repulsion = 22260.341844 eV Total energy + Delta-G solvation = -3758.756352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.17268 -40.75372 -38.79423 -35.40309 -34.06744 -33.10089 -32.53476 -32.32568 -29.69361 -29.23422 -28.95924 -26.87170 -25.21541 -24.87900 -23.05004 -21.83251 -21.52056 -20.63876 -19.51112 -18.68884 -17.18551 -16.71510 -16.32463 -16.02046 -15.64984 -15.32550 -15.00033 -14.68396 -14.37423 -14.26088 -13.80416 -13.55223 -13.27929 -13.17548 -13.11700 -13.02887 -12.78187 -12.39305 -12.18277 -12.00470 -11.97794 -11.70649 -11.30117 -11.20499 -11.07229 -10.97276 -10.69359 -10.21884 -10.17224 -10.00172 -9.40916 -9.34483 -9.28461 -8.73633 -8.38569 -8.30319 -7.81091 -6.07422 -4.12920 1.21251 1.82421 1.84830 2.20360 2.57457 2.85117 3.30849 3.37325 3.43198 4.02831 4.06791 4.09589 4.27666 4.47802 4.56834 4.60292 4.82797 4.86740 4.95372 5.03276 5.18829 5.23967 5.25724 5.39135 5.50865 5.72583 5.76376 5.84065 5.88994 5.98580 6.15354 6.24349 6.31202 6.50613 6.80956 6.98784 7.03974 7.06025 7.08723 7.23758 7.39867 7.47962 7.73709 7.88969 8.10867 8.30280 8.84795 9.12634 9.52374 11.00261 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.002678 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.646791 B =10454.131401 C =10895.289273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.002 4.002 3 C -0.132 4.132 4 C -0.206 4.206 5 C 0.530 3.470 6 O -0.533 6.533 7 O -0.351 6.351 8 C 0.215 3.785 9 H 0.046 0.954 10 C -0.154 4.154 11 C -0.515 4.515 12 H 0.069 0.931 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.910 3.090 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.111 3.889 20 C -0.090 4.090 21 N -0.363 5.363 22 C -0.034 4.034 23 C 0.068 3.932 24 N -0.282 5.282 25 N -0.368 5.368 26 C 0.102 3.898 27 C 0.076 3.924 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.154 0.846 32 H 0.016 0.984 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.191 0.809 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.032 -20.349 -4.094 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.156 4.156 4 C -0.214 4.214 5 C 0.376 3.624 6 O -0.426 6.426 7 O -0.267 6.267 8 C 0.163 3.837 9 H 0.064 0.936 10 C -0.211 4.211 11 C -0.553 4.553 12 H 0.087 0.913 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.737 3.263 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.004 4.004 20 C -0.147 4.147 21 N -0.038 5.038 22 C -0.136 4.136 23 C -0.120 4.120 24 N -0.102 5.102 25 N -0.150 5.150 26 C -0.039 4.039 27 C -0.073 4.073 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.035 0.965 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.208 0.792 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.020 -21.989 -3.873 28.692 hybrid contribution 0.250 1.761 0.140 1.784 sum -17.770 -20.229 -3.734 27.183 Atomic orbital electron populations 1.20248 0.88101 1.02585 1.02472 1.20209 0.93391 0.84815 1.12261 1.21923 0.90530 0.97807 1.05296 1.19670 0.92383 0.90752 1.18609 1.19955 0.87212 0.82651 0.72594 1.90720 1.29410 1.74082 1.48400 1.86558 1.41176 1.16812 1.82110 1.20571 0.78943 0.89687 0.94521 0.93634 1.22146 1.03377 0.98826 0.96781 1.21095 0.97672 1.00317 1.36221 0.91305 1.24886 0.94757 0.98785 0.95701 1.69919 1.01241 1.36540 1.45184 0.86247 0.78412 0.82519 0.79109 1.19491 1.20849 1.20827 1.20556 0.84114 0.93550 1.02156 1.20522 0.94526 0.96275 1.03355 1.40049 1.04627 1.01986 1.57157 1.17473 1.11991 0.86813 0.97353 1.24077 0.98639 0.89820 0.99426 1.77479 1.15476 1.22287 0.94994 1.48315 1.42762 1.09539 1.14355 1.21971 0.95864 0.91163 0.94893 1.22384 0.99685 0.85659 0.99571 0.91344 0.90081 0.92463 0.82847 0.96531 0.88426 0.94571 0.92612 0.90498 0.92215 0.88024 0.79212 0.90236 0.89040 0.88748 0.79996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.04 36.00 0.36 -0.35 16 2 C 0.00 -0.02 6.82 -81.82 -0.56 -0.58 16 3 C -0.13 -2.16 10.89 -37.47 -0.41 -2.57 16 4 C -0.21 -3.94 6.33 -102.99 -0.65 -4.59 16 5 C 0.53 12.45 7.92 34.31 0.27 12.73 16 6 O -0.53 -13.39 14.14 -19.31 -0.27 -13.66 16 7 O -0.35 -9.07 9.77 -40.77 -0.40 -9.47 16 8 C 0.22 6.10 2.56 -27.88 -0.07 6.02 16 9 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 10 C -0.15 -4.09 9.33 37.16 0.35 -3.74 16 11 C -0.51 -15.03 8.90 -34.44 -0.31 -15.34 16 12 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -26.06 11.32 55.43 0.63 -25.43 16 15 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 C 0.11 1.77 6.90 -81.43 -0.56 1.21 16 20 C -0.09 -1.27 9.53 36.01 0.34 -0.93 16 21 N -0.36 -4.85 2.92 -52.56 -0.15 -5.01 16 22 C -0.03 -0.37 4.94 -83.85 -0.41 -0.78 16 23 C 0.07 0.70 12.04 -17.21 -0.21 0.49 16 24 N -0.28 -2.87 12.56 30.71 0.39 -2.48 16 25 N -0.37 -2.83 4.02 -67.98 -0.27 -3.11 16 26 C 0.10 0.32 11.47 59.85 0.69 1.01 16 27 C 0.08 0.62 10.56 -16.97 -0.18 0.44 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.06 0.45 6.93 -51.93 -0.36 0.09 16 31 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.72 7.75 -51.93 -0.40 0.31 16 38 H 0.10 1.66 6.51 -51.93 -0.34 1.32 16 39 H 0.19 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -35.45 368.97 -6.97 -42.42 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.98 Total: -0.12 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.44 Total: -5.37 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.59 Total: -36.02 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.67 Total: -23.13 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.45 -6.97 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.708 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds