Wall clock time and date at job start Tue Mar 31 2020 11:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34475 * 125.45608 * 2 1 4 4 C 1.46748 * 106.39642 * 180.15179 * 3 2 1 5 5 C 1.47058 * 127.01596 * 179.83634 * 4 3 2 6 6 O 1.21556 * 119.99857 * 179.68824 * 5 4 3 7 7 O 1.34801 * 119.99919 * 359.68198 * 5 4 3 8 8 C 1.45206 * 116.99461 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.47146 * 329.99282 * 8 7 5 10 10 C 1.52997 * 109.47226 * 90.00255 * 8 7 5 11 11 C 1.50706 * 109.46448 * 210.00047 * 8 7 5 12 12 H 1.07999 * 120.00196 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47363 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 C 1.37950 * 105.96451 * 359.57229 * 4 3 2 20 20 C 1.50700 * 125.89895 * 180.29550 * 19 4 3 21 21 N 1.34716 * 108.19541 * 0.26092 * 19 4 3 22 22 C 1.40784 * 124.82484 * 179.97438 * 21 19 4 23 23 C 1.40294 * 126.10638 * 65.02728 * 22 21 19 24 24 N 1.30826 * 108.20062 * 179.97438 * 23 22 21 25 25 N 1.40062 * 108.34264 * 359.97438 * 24 23 22 26 26 C 1.46503 * 125.99518 * 180.02562 * 25 24 23 27 27 C 1.35159 * 108.00761 * 359.76999 * 25 24 23 28 28 H 1.09004 * 109.47371 * 270.32867 * 1 2 3 29 29 H 1.09008 * 109.47374 * 30.32790 * 1 2 3 30 30 H 1.08997 * 109.47867 * 150.32949 * 1 2 3 31 31 H 1.08002 * 126.80506 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99431 * 10 8 7 33 33 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47261 * 59.99603 * 10 8 7 35 35 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47249 * 89.97945 * 20 19 4 37 37 H 1.08999 * 109.46764 * 209.97385 * 20 19 4 38 38 H 1.08994 * 109.47442 * 329.97356 * 20 19 4 39 39 H 1.08000 * 125.89760 * 359.95877 * 23 22 21 40 40 H 1.08994 * 109.46942 * 89.97074 * 26 25 24 41 41 H 1.09000 * 109.46589 * 209.97431 * 26 25 24 42 42 H 1.09001 * 109.46752 * 329.97282 * 26 25 24 43 43 H 1.08004 * 126.17188 * 180.26414 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2870 1.0954 0.0000 4 6 3.6741 0.6162 -0.0037 5 6 4.8943 1.4369 -0.0085 6 8 5.9861 0.9026 -0.0055 7 8 4.8020 2.7817 -0.0162 8 6 6.0477 3.5279 -0.0211 9 1 6.8169 2.9541 0.4958 10 6 6.4846 3.7816 -1.4652 11 6 5.8465 4.8457 0.6818 12 1 4.8792 5.0974 1.0909 13 6 6.8975 5.7299 0.8027 14 7 8.0753 5.4236 0.3042 15 14 6.6483 7.3630 1.6746 16 1 5.2421 7.4659 2.1407 17 1 7.5641 7.4465 2.8406 18 1 6.9406 8.4754 0.7351 19 6 3.5996 -0.7613 0.0042 20 6 4.7709 -1.7095 0.0104 21 7 2.2990 -1.1123 0.0063 22 6 1.8239 -2.4375 0.0134 23 6 1.9955 -3.3717 1.0459 24 7 1.4150 -4.4880 0.6876 25 7 0.8537 -4.3050 -0.5826 26 6 0.1116 -5.3092 -1.3488 27 6 1.1120 -3.0376 -0.9748 28 1 -0.3634 0.0059 1.0277 29 1 -0.3634 0.8871 -0.5189 30 1 -0.3635 -0.8929 -0.5087 31 1 1.9580 2.1240 -0.0004 32 1 6.6301 2.8285 -1.9736 33 1 7.4194 4.3421 -1.4688 34 1 5.7153 4.3554 -1.9821 35 1 8.8145 6.0459 0.3889 36 1 5.0530 -1.9319 1.0395 37 1 4.4934 -2.6330 -0.4979 38 1 5.6134 -1.2497 -0.5060 39 1 2.5170 -3.1992 1.9758 40 1 -0.9487 -5.2413 -1.1055 41 1 0.2521 -5.1297 -2.4147 42 1 0.4794 -6.3037 -1.0963 43 1 0.8089 -2.5846 -1.9072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:01 Heat of formation + Delta-G solvation = 18.491806 kcal Electronic energy + Delta-G solvation = -26020.000042 eV Core-core repulsion = 22260.341844 eV Total energy + Delta-G solvation = -3759.658199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.06672 -41.76042 -40.66099 -37.38927 -35.27358 -34.73515 -33.64459 -33.24592 -31.65543 -30.16786 -30.02556 -27.54834 -27.40763 -26.17783 -24.40771 -22.86217 -22.55872 -22.05046 -20.90426 -19.95967 -18.63229 -18.40878 -17.72145 -17.21470 -16.83832 -16.57323 -16.47794 -16.02914 -15.94014 -15.31924 -14.86253 -14.72649 -14.38996 -14.23834 -14.10589 -13.97252 -13.77904 -13.59921 -13.52013 -13.43631 -13.16317 -13.04509 -12.95386 -12.88133 -12.77450 -12.44096 -12.34513 -12.11447 -12.02245 -11.50701 -11.23445 -10.92784 -10.63883 -10.57313 -10.20503 -9.37221 -9.01186 -8.25898 -6.42319 0.41412 0.65198 1.20127 1.24413 1.42710 1.44232 1.49328 1.58386 1.83685 2.27941 2.38000 2.55401 3.04302 3.47966 3.70675 3.82179 3.87910 4.08948 4.09379 4.26897 4.44515 4.44925 4.52353 4.54517 4.61148 4.63473 4.66392 4.73062 4.81020 4.82439 4.86860 4.94602 4.98619 5.09812 5.14920 5.19782 5.33599 5.52074 5.67116 5.73394 5.79039 5.96384 6.04423 6.17045 6.37792 6.45773 6.64186 7.12796 7.31850 8.82541 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.002678 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.646791 B =10454.131401 C =10895.289273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.023 3.977 3 C -0.161 4.161 4 C -0.253 4.253 5 C 0.522 3.478 6 O -0.562 6.562 7 O -0.360 6.360 8 C 0.218 3.782 9 H 0.005 0.995 10 C -0.139 4.139 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.986 3.014 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.269 1.269 19 C 0.121 3.879 20 C -0.084 4.084 21 N -0.349 5.349 22 C -0.072 4.072 23 C 0.062 3.938 24 N -0.303 5.303 25 N -0.359 5.359 26 C 0.090 3.910 27 C 0.098 3.902 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.271 0.729 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.193 0.807 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.016 -21.480 -4.666 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C -0.184 4.184 4 C -0.261 4.261 5 C 0.370 3.630 6 O -0.457 6.457 7 O -0.276 6.276 8 C 0.165 3.835 9 H 0.023 0.977 10 C -0.197 4.197 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.808 3.192 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.194 1.194 19 C 0.004 3.996 20 C -0.141 4.141 21 N -0.021 5.021 22 C -0.173 4.173 23 C -0.124 4.124 24 N -0.125 5.125 25 N -0.140 5.140 26 C -0.049 4.049 27 C -0.052 4.052 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.169 0.831 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.210 0.790 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.115 0.885 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -21.043 -23.178 -4.453 31.620 hybrid contribution 1.081 1.871 0.271 2.178 sum -19.962 -21.307 -4.182 29.494 Atomic orbital electron populations 1.20401 0.84643 1.04455 1.03627 1.20744 0.95150 0.83717 1.08690 1.21965 0.89709 0.98901 1.07803 1.19564 0.91765 0.91867 1.22942 1.20743 0.88672 0.81868 0.71672 1.90683 1.30893 1.74062 1.50052 1.86545 1.39760 1.18472 1.82869 1.20318 0.79049 0.89362 0.94819 0.97711 1.21962 1.02720 0.98895 0.96135 1.21319 0.98097 1.01156 1.37713 0.91675 1.25871 0.94082 1.02612 0.95962 1.70034 1.02051 1.38026 1.45484 0.85100 0.78669 0.77367 0.78028 1.18790 1.20028 1.19440 1.20666 0.85851 0.92574 1.00536 1.20471 0.93133 0.96688 1.03822 1.40099 1.03538 1.03402 1.55076 1.17667 1.14731 0.85766 0.99155 1.24156 0.98778 0.89803 0.99702 1.77463 1.16226 1.22284 0.96511 1.48746 1.41632 1.10055 1.13543 1.22412 0.96291 0.90272 0.95920 1.22767 0.97432 0.85477 0.99554 0.90426 0.88596 0.90175 0.83125 0.96013 0.89938 0.93691 0.91996 0.89698 0.89598 0.90629 0.78990 0.88511 0.86257 0.88451 0.76994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.04 71.24 0.71 -0.42 16 2 C 0.02 0.58 6.82 40.96 0.28 0.86 16 3 C -0.16 -5.33 10.89 23.63 0.26 -5.07 16 4 C -0.25 -10.09 6.33 -18.81 -0.12 -10.21 16 5 C 0.52 26.14 7.92 70.14 0.56 26.69 16 6 O -0.56 -30.28 14.14 19.65 0.28 -30.00 16 7 O -0.36 -19.78 9.77 -57.13 -0.56 -20.33 16 8 C 0.22 13.02 2.56 29.85 0.08 13.10 16 9 H 0.01 0.34 7.16 -2.39 -0.02 0.32 16 10 C -0.14 -7.75 9.33 71.98 0.67 -7.08 16 11 C -0.55 -32.94 8.90 25.60 0.23 -32.71 16 12 H 0.07 3.88 7.81 -2.91 -0.02 3.85 16 13 C 0.01 0.81 5.30 84.66 0.45 1.26 16 14 N -0.92 -54.87 11.32 21.45 0.24 -54.63 16 15 Si 0.99 44.67 29.54 68.60 2.03 46.69 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C 0.12 3.89 6.90 42.05 0.29 4.18 16 20 C -0.08 -2.41 9.53 71.24 0.68 -1.73 16 21 N -0.35 -8.77 2.92 -320.20 -0.94 -9.71 16 22 C -0.07 -1.37 4.94 37.63 0.19 -1.18 16 23 C 0.06 1.17 12.04 85.34 1.03 2.20 16 24 N -0.30 -5.46 12.56 -56.75 -0.71 -6.17 16 25 N -0.36 -4.21 4.02 -368.99 -1.48 -5.69 16 26 C 0.09 0.20 11.47 127.77 1.47 1.67 16 27 C 0.10 1.22 10.56 83.61 0.88 2.10 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 0.89 6.93 -2.39 -0.02 0.87 16 31 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 4.82 6.07 -2.39 -0.01 4.81 16 34 H 0.04 2.34 8.14 -2.38 -0.02 2.33 16 35 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 1.97 7.75 -2.39 -0.02 1.95 16 38 H 0.07 2.60 6.51 -2.39 -0.02 2.58 16 39 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -81.09 368.97 7.52 -73.57 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.02 Total: 12.61 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 7.64 Total: -6.34 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.89 Total: -76.20 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.28 Total: -50.33 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -81.09 7.52 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.066 kcal (2) G-P(sol) polarization free energy of solvation -81.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds