Wall clock time and date at job start Tue Mar 31 2020 11:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.99907 * 2 1 4 4 C 1.38210 * 120.00066 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99849 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.00256 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00291 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.66172 * 184.31539 * 7 6 5 9 9 C 1.50081 * 109.40734 * 304.47090 * 7 6 5 10 10 O 1.21280 * 118.50063 * 287.25773 * 9 7 6 11 11 N 1.33380 * 123.00938 * 107.43607 * 9 7 6 12 12 C 1.45654 * 124.58518 * 4.16056 * 11 9 7 13 13 C 1.52984 * 110.77625 * 338.07694 * 12 11 9 14 14 N 1.47051 * 109.56598 * 64.01768 * 7 6 5 15 15 C 1.34775 * 121.34856 * 102.93940 * 14 7 6 16 16 O 1.21589 * 119.99896 * 184.47172 * 15 14 7 17 17 N 1.34771 * 120.00271 * 4.47529 * 15 14 7 18 18 C 1.46504 * 120.00154 * 174.69700 * 17 15 14 19 19 C 1.50699 * 109.47110 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00081 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99601 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00315 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99861 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46866 * 60.00254 * 23 21 19 25 25 H 1.48494 * 109.47090 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47127 * 300.00361 * 23 21 19 27 27 C 1.38216 * 119.99952 * 180.24203 * 2 1 3 28 28 H 1.09000 * 109.47512 * 89.99735 * 1 2 3 29 29 H 1.09004 * 109.46673 * 209.99759 * 1 2 3 30 30 H 1.08997 * 109.47075 * 329.99477 * 1 2 3 31 31 H 1.08004 * 119.99637 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99970 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.99784 * 180.02562 * 5 4 3 34 34 H 0.96993 * 117.70988 * 184.13638 * 11 9 7 35 35 H 1.09005 * 109.21302 * 217.74391 * 12 11 9 36 36 H 1.09001 * 109.21650 * 98.41678 * 12 11 9 37 37 H 1.09000 * 109.71982 * 287.05395 * 13 12 11 38 38 H 1.09004 * 109.75310 * 166.41996 * 13 12 11 39 39 H 0.97000 * 119.99905 * 354.69655 * 17 15 14 40 40 H 1.08997 * 109.46817 * 300.00261 * 18 17 15 41 41 H 1.09003 * 109.46834 * 60.00003 * 18 17 15 42 42 H 0.97000 * 120.00194 * 179.97438 * 22 21 19 43 43 H 1.07992 * 120.00401 * 0.03597 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5807 -1.1969 0.0016 7 6 4.3342 -2.5020 0.0022 8 1 3.6312 -3.3314 -0.0751 9 6 5.2779 -2.5336 -1.1644 10 8 4.8177 -2.6775 -2.2773 11 7 6.5998 -2.4141 -1.0332 12 6 7.2995 -2.3268 0.2413 13 6 6.3554 -1.8520 1.3474 14 7 5.1057 -2.6247 1.2481 15 6 4.6887 -3.4166 2.2558 16 8 5.3015 -3.4377 3.3058 17 7 3.5926 -4.1850 2.0998 18 6 3.2057 -5.1311 3.1494 19 6 1.9550 -5.8607 2.7319 20 1 1.4947 -5.6420 1.7798 21 6 1.3992 -6.8083 3.5651 22 7 1.9601 -7.0750 4.7243 23 14 -0.1508 -7.7134 3.0473 24 1 0.1058 -8.4519 1.7848 25 1 -0.5429 -8.6721 4.1112 26 1 -1.2475 -6.7351 2.8344 27 6 2.1981 -1.1970 -0.0051 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6582 2.1327 0.0004 32 1 4.1204 2.1327 0.0010 33 1 5.3517 0.0001 0.0024 34 1 7.1325 -2.3836 -1.8431 35 1 8.1267 -1.6229 0.1489 36 1 7.6930 -3.3092 0.5026 37 1 6.1428 -0.7907 1.2190 38 1 6.8151 -2.0198 2.3214 39 1 3.0599 -4.1118 1.2925 40 1 4.0107 -5.8491 3.3060 41 1 3.0174 -4.5886 4.0759 42 1 1.5688 -7.7414 5.3106 43 1 1.6582 -2.1322 -0.0096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854027068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:56 Heat of formation + Delta-G solvation = -27.018118 kcal Electronic energy + Delta-G solvation = -27101.911993 eV Core-core repulsion = 23340.280336 eV Total energy + Delta-G solvation = -3761.631657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.20247 -39.08192 -38.96189 -36.45046 -34.71176 -34.21546 -32.74147 -32.27678 -31.61546 -29.60663 -27.63489 -26.93757 -26.39846 -24.10975 -22.45150 -22.34597 -21.35839 -20.44447 -18.81628 -18.50291 -17.16951 -16.94315 -16.60011 -16.09671 -15.71052 -15.58324 -15.15267 -14.88036 -14.83399 -14.38305 -14.05915 -13.79184 -13.70228 -13.34026 -13.19528 -12.93657 -12.66155 -12.42799 -12.20114 -12.05226 -11.93140 -11.82263 -11.69743 -11.27289 -11.03567 -10.96983 -10.87762 -10.47069 -10.28028 -9.56421 -9.40134 -9.31611 -8.89953 -8.76847 -8.69536 -8.60580 -7.84507 -6.16343 -4.23177 1.15368 1.31587 2.41330 2.77495 3.11229 3.26198 3.31146 3.32817 3.63975 3.75470 4.27298 4.30542 4.45673 4.51807 4.70001 4.74262 4.80128 4.85359 5.01953 5.06281 5.18212 5.20000 5.27477 5.36034 5.53621 5.55779 5.64612 5.70626 5.75015 5.93682 6.05288 6.28242 6.33884 6.40392 6.51541 6.58402 6.89181 6.92688 7.06850 7.41312 7.45586 7.53288 7.75100 7.96905 8.00193 8.67300 8.81565 9.18609 9.43887 10.93733 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.004597 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.422800 B = 6088.851887 C = 7430.857987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.115 4.115 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.086 4.086 7 C 0.173 3.827 8 H 0.125 0.875 9 C 0.527 3.473 10 O -0.540 6.540 11 N -0.715 5.715 12 C 0.093 3.907 13 C 0.106 3.894 14 N -0.633 5.633 15 C 0.704 3.296 16 O -0.588 6.588 17 N -0.725 5.725 18 C 0.267 3.733 19 C -0.543 4.543 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.903 3.097 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.092 4.092 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.384 0.616 40 H 0.025 0.975 41 H 0.028 0.972 42 H 0.266 0.734 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 16.392 -11.389 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.088 4.088 7 C 0.065 3.935 8 H 0.142 0.858 9 C 0.312 3.688 10 O -0.416 6.416 11 N -0.367 5.367 12 C -0.032 4.032 13 C -0.018 4.018 14 N -0.373 5.373 15 C 0.406 3.594 16 O -0.467 6.467 17 N -0.378 5.378 18 C 0.146 3.854 19 C -0.581 4.581 20 H 0.080 0.920 21 C -0.138 4.138 22 N -0.522 5.522 23 Si 0.730 3.270 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.111 4.111 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.235 0.765 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.038 16.060 -10.727 20.234 hybrid contribution -0.742 -0.489 -0.816 1.206 sum 5.296 15.570 -11.543 20.093 Atomic orbital electron populations 1.20818 0.90861 1.03198 1.02397 1.19903 0.96316 0.92839 0.99153 1.21060 0.94230 0.97525 1.00544 1.21046 0.94348 0.97637 1.00490 1.21045 0.99662 0.92019 1.00302 1.19641 0.93888 0.93454 1.01775 1.20017 0.92956 0.97608 0.82908 0.85753 1.19894 0.83102 0.75505 0.90344 1.90785 1.75837 1.49259 1.25752 1.45324 1.06949 1.74412 1.10045 1.21877 0.95194 1.02855 0.83286 1.21897 0.84076 0.95415 1.00425 1.47501 1.24593 1.49534 1.15678 1.15946 0.82084 0.78705 0.82666 1.90878 1.59184 1.70748 1.25863 1.45891 1.26235 1.41676 1.24008 1.19034 0.95056 0.86061 0.85260 1.21155 1.10172 1.22252 1.04559 0.92037 1.24918 0.97672 0.96542 0.94687 1.69964 1.39929 1.32844 1.09481 0.86484 0.82738 0.79483 0.78280 1.20042 1.21057 1.20041 1.20984 0.92911 0.98413 0.98796 0.91080 0.90962 0.91546 0.86048 0.85971 0.86083 0.76495 0.89260 0.90772 0.90506 0.86596 0.78168 0.95672 0.95443 0.92386 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.08 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 5 C -0.11 -1.34 8.29 -39.58 -0.33 -1.67 16 6 C -0.09 -1.17 5.00 -104.62 -0.52 -1.69 16 7 C 0.17 2.49 2.70 -70.23 -0.19 2.30 16 8 H 0.12 1.88 5.65 -51.93 -0.29 1.58 16 9 C 0.53 7.36 6.51 -11.91 -0.08 7.28 16 10 O -0.54 -9.19 17.80 5.56 0.10 -9.09 16 11 N -0.72 -7.43 5.42 -61.45 -0.33 -7.76 16 12 C 0.09 0.81 7.34 -4.51 -0.03 0.78 16 13 C 0.11 1.22 6.08 -3.63 -0.02 1.19 16 14 N -0.63 -9.70 2.61 -173.78 -0.45 -10.16 16 15 C 0.70 14.36 8.32 -86.92 -0.72 13.64 16 16 O -0.59 -14.04 15.84 5.29 0.08 -13.96 16 17 N -0.73 -15.60 5.45 -66.41 -0.36 -15.97 16 18 C 0.27 7.06 5.43 -5.19 -0.03 7.03 16 19 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 20 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 23 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.09 -1.25 9.33 -39.58 -0.37 -1.62 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.25 5.62 -52.48 -0.30 0.95 16 34 H 0.40 3.43 8.80 -40.82 -0.36 3.07 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.76 5.15 -51.93 -0.27 0.49 16 38 H 0.12 1.44 7.07 -51.93 -0.37 1.08 16 39 H 0.38 7.36 5.95 -40.82 -0.24 7.12 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 1.66 7.96 -52.49 -0.42 1.24 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -34.67 355.74 -9.21 -43.88 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.57 Total: 8.72 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -3.75 Total: 8.33 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.41 Total: -59.03 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.18 Total: -23.05 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.67 -9.21 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854027068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.861 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds