Wall clock time and date at job start Tue Mar 31 2020 11:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00222 * 2 1 4 4 C 1.53001 * 109.47281 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46933 * 65.00438 * 4 3 2 6 6 C 1.46500 * 119.99730 * 270.00417 * 5 4 3 7 7 C 1.50704 * 109.46818 * 263.35583 * 6 5 4 8 8 H 1.07996 * 120.00038 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99928 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00220 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00236 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47005 * 59.99715 * 11 9 7 13 13 H 1.48493 * 109.47494 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47171 * 300.00250 * 11 9 7 15 15 C 1.34775 * 120.00044 * 90.00027 * 5 4 3 16 16 O 1.21587 * 119.99767 * 3.77286 * 15 5 4 17 17 C 1.47590 * 120.00255 * 183.77508 * 15 5 4 18 18 C 1.36575 * 125.91906 * 173.65449 * 17 15 5 19 19 N 1.36189 * 107.09193 * 180.02562 * 18 17 15 20 20 C 1.36677 * 132.29479 * 179.97438 * 19 18 17 21 21 C 1.34847 * 120.64240 * 180.32100 * 20 19 18 22 22 C 1.50698 * 119.82975 * 179.70206 * 21 20 19 23 23 C 1.40579 * 120.34134 * 359.39624 * 21 20 19 24 24 C 1.35893 * 119.72860 * 0.63260 * 23 21 20 25 25 C 1.37270 * 107.34437 * 0.02562 * 19 18 17 26 26 N 1.32238 * 108.37734 * 0.02562 * 25 19 18 27 27 H 1.09002 * 109.46434 * 299.99864 * 1 2 3 28 28 H 1.09000 * 109.47076 * 59.98837 * 1 2 3 29 29 H 1.08989 * 109.47442 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46861 * 60.01017 * 3 2 1 31 31 H 1.08991 * 109.47672 * 300.00531 * 3 2 1 32 32 H 1.09004 * 109.47158 * 305.01253 * 4 3 2 33 33 H 1.08993 * 109.47406 * 185.00433 * 4 3 2 34 34 H 1.08994 * 109.47711 * 23.36058 * 6 5 4 35 35 H 1.09005 * 109.46876 * 143.36635 * 6 5 4 36 36 H 0.96999 * 120.00168 * 180.02562 * 10 9 7 37 37 H 1.07993 * 126.45312 * 0.05756 * 18 17 15 38 38 H 1.07998 * 119.68022 * 0.04744 * 20 19 18 39 39 H 1.09007 * 109.47213 * 90.00455 * 22 21 20 40 40 H 1.09008 * 109.47372 * 209.99845 * 22 21 20 41 41 H 1.08997 * 109.47502 * 330.00513 * 22 21 20 42 42 H 1.08001 * 120.13407 * 180.28905 * 23 21 20 43 43 H 1.08001 * 120.32897 * 179.65381 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2529 6 6 4.1051 -0.8921 -1.3430 7 6 5.5404 -1.2845 -1.1044 8 1 6.2819 -0.5251 -0.9052 9 6 5.9070 -2.6132 -1.1405 10 7 5.0041 -3.5380 -1.3837 11 14 7.6859 -3.0998 -0.8442 12 1 8.1038 -2.6490 0.5077 13 1 7.8172 -4.5761 -0.9356 14 1 8.5511 -2.4610 -1.8683 15 6 4.2615 1.3338 -2.3219 16 8 4.2205 2.5453 -2.2273 17 6 4.6243 0.7058 -3.6073 18 6 4.8166 1.3582 -4.7917 19 7 5.1347 0.4150 -5.7211 20 6 5.4254 0.4984 -7.0540 21 6 5.7072 -0.6111 -7.7668 22 6 6.0186 -0.4986 -9.2369 23 6 5.7182 -1.8714 -7.1441 24 6 5.4306 -1.9713 -5.8197 25 6 5.1309 -0.8023 -5.0867 26 7 4.8209 -0.6091 -3.8158 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 1.6888 1.8463 0.8901 31 1 1.6887 1.8464 -0.8898 32 1 3.8515 0.5680 0.8408 33 1 3.9786 2.1764 0.0890 34 1 3.4705 -1.3605 -0.5908 35 1 3.7980 -1.2234 -2.3350 36 1 5.2619 -4.4728 -1.4087 37 1 4.7327 2.4217 -4.9594 38 1 5.4252 1.4618 -7.5421 39 1 7.0913 -0.3594 -9.3715 40 1 5.7038 -1.4097 -9.7458 41 1 5.4861 0.3547 -9.6569 42 1 5.9489 -2.7573 -7.7172 43 1 5.4308 -2.9353 -5.3328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859183715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:17 Heat of formation + Delta-G solvation = 26.888390 kcal Electronic energy + Delta-G solvation = -27008.462169 eV Core-core repulsion = 23249.168074 eV Total energy + Delta-G solvation = -3759.294095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38797 -39.00767 -37.51963 -37.04085 -34.79052 -33.32075 -32.32708 -31.96309 -29.77766 -28.50712 -26.82333 -26.75131 -25.78687 -23.84393 -22.87401 -22.61574 -21.76667 -21.13955 -18.46309 -17.44957 -16.61530 -16.35707 -16.12954 -15.81869 -15.57278 -15.43638 -14.96942 -14.65581 -14.50905 -14.21603 -14.11209 -13.81518 -13.58361 -13.37186 -12.87193 -12.54195 -12.17435 -12.10480 -11.81798 -11.69445 -11.45951 -11.41476 -11.26982 -10.95435 -10.78454 -10.73109 -10.66949 -10.44874 -9.98514 -9.53351 -9.35148 -9.25014 -8.86181 -8.36520 -8.10381 -7.60325 -7.39755 -5.80332 -3.79495 0.93954 1.53681 2.66524 2.85654 3.41636 3.44575 3.49119 3.71729 3.98217 4.20679 4.32389 4.49071 4.59895 4.71306 4.80120 4.92437 5.18393 5.34732 5.40633 5.44940 5.50124 5.55318 5.57950 5.65255 5.68404 5.71425 5.77822 5.82517 5.87362 5.92458 6.06414 6.14600 6.30802 6.41065 6.43585 6.74240 6.86803 7.05922 7.35259 7.56379 7.78677 8.01559 8.12405 8.33567 8.50576 8.53388 9.06698 9.22969 9.79974 11.28088 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.005375 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.681480 B = 5208.130154 C = 6875.264976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.569 5.569 6 C 0.232 3.768 7 C -0.502 4.502 8 H 0.047 0.953 9 C 0.071 3.929 10 N -0.890 5.890 11 Si 0.882 3.118 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.594 3.406 16 O -0.581 6.581 17 C 0.022 3.978 18 C -0.039 4.039 19 N -0.365 5.365 20 C 0.041 3.959 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.125 4.125 24 C -0.046 4.046 25 C 0.198 3.802 26 N -0.378 5.378 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.257 0.743 37 H 0.187 0.813 38 H 0.156 0.844 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.137 0.863 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 6.128 -11.307 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.297 5.297 6 C 0.113 3.887 7 C -0.541 4.541 8 H 0.065 0.935 9 C -0.130 4.130 10 N -0.530 5.530 11 Si 0.711 3.289 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.207 1.207 15 C 0.381 3.619 16 O -0.463 6.463 17 C -0.113 4.113 18 C -0.174 4.174 19 N -0.037 5.037 20 C -0.080 4.080 21 C -0.112 4.112 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.066 4.066 25 C -0.046 4.046 26 N -0.097 5.097 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.204 0.796 38 H 0.173 0.827 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.155 0.845 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.562 5.785 -10.596 12.587 hybrid contribution 1.003 0.432 -0.394 1.161 sum -2.559 6.218 -10.990 12.883 Atomic orbital electron populations 1.22672 0.82257 1.02379 0.99056 1.88081 1.18573 1.27343 1.95171 1.23020 0.95235 0.84987 0.99697 1.21406 0.91119 0.99765 0.88189 1.48147 1.61540 1.10858 1.09142 1.19957 0.96796 0.71253 1.00693 1.21240 0.93880 0.91868 1.47095 0.93464 1.24696 0.96297 0.96381 0.95631 1.69935 1.32702 1.00282 1.50074 0.86834 0.86474 0.77074 0.78537 1.20617 1.21440 1.20726 1.16973 0.77061 0.85303 0.82569 1.90665 1.57117 1.13663 1.84858 1.20643 1.06324 0.90290 0.94014 1.22399 1.11797 0.95141 0.88087 1.42836 1.43695 1.09563 1.07608 1.21267 1.04412 1.00388 0.81959 1.19375 1.02626 0.92271 0.96917 1.20632 1.02023 1.02980 0.90120 1.20833 1.02599 0.97144 0.94313 1.20447 0.96834 0.96496 0.92836 1.21474 1.07287 0.86089 0.89720 1.71837 1.14259 1.14482 1.09145 0.94773 0.94731 0.89879 0.93161 0.93463 0.89346 0.89321 0.94373 0.90619 0.93303 0.79602 0.82681 0.90985 0.90955 0.91524 0.84533 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.03 9.66 -35.23 -0.34 -7.37 16 3 C 0.05 0.83 6.28 37.16 0.23 1.06 16 4 C 0.12 2.33 5.81 -4.04 -0.02 2.30 16 5 N -0.57 -13.25 2.44 -176.26 -0.43 -13.68 16 6 C 0.23 6.12 4.53 -5.19 -0.02 6.10 16 7 C -0.50 -14.18 8.34 -34.44 -0.29 -14.47 16 8 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 10 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 11 Si 0.88 22.12 29.54 -169.99 -5.02 17.10 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.59 13.79 7.61 -12.45 -0.09 13.69 16 16 O -0.58 -13.53 16.43 5.29 0.09 -13.44 16 17 C 0.02 0.50 6.62 -83.45 -0.55 -0.06 16 18 C -0.04 -0.71 11.47 -16.22 -0.19 -0.89 16 19 N -0.37 -6.21 2.93 -62.38 -0.18 -6.39 16 20 C 0.04 0.52 10.54 -16.60 -0.17 0.34 16 21 C -0.11 -1.23 5.85 -104.94 -0.61 -1.84 16 22 C -0.10 -0.73 10.00 36.00 0.36 -0.37 16 23 C -0.13 -1.58 9.73 -39.54 -0.38 -1.97 16 24 C -0.05 -0.77 10.11 -39.30 -0.40 -1.17 16 25 C 0.20 3.95 7.79 -156.04 -1.22 2.73 16 26 N -0.38 -8.90 7.05 -9.35 -0.07 -8.96 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.09 8.14 -51.94 -0.42 0.67 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.73 8.07 -51.93 -0.42 1.31 16 33 H 0.09 1.63 7.37 -51.93 -0.38 1.25 16 34 H 0.04 1.08 7.26 -51.93 -0.38 0.70 16 35 H 0.08 2.13 5.33 -51.93 -0.28 1.86 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.19 2.81 8.06 -52.49 -0.42 2.39 16 38 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.07 0.45 8.09 -51.92 -0.42 0.03 16 41 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 42 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -34.57 365.20 -8.13 -42.70 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.07 Total: 0.78 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.35 Total: 8.98 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.06 Total: -54.24 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.25 Total: -20.81 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.57 -8.13 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859183715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.585 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds