Wall clock time and date at job start Tue Mar 31 2020 11:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00222 * 2 1 4 4 C 1.53001 * 109.47281 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46933 * 65.00438 * 4 3 2 6 6 C 1.46500 * 119.99730 * 270.00417 * 5 4 3 7 7 C 1.50704 * 109.46818 * 263.35583 * 6 5 4 8 8 H 1.07996 * 120.00038 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99928 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00220 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00236 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47005 * 59.99715 * 11 9 7 13 13 H 1.48493 * 109.47494 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47171 * 300.00250 * 11 9 7 15 15 C 1.34775 * 120.00044 * 90.00027 * 5 4 3 16 16 O 1.21587 * 119.99767 * 3.77286 * 15 5 4 17 17 C 1.47590 * 120.00255 * 183.77508 * 15 5 4 18 18 C 1.36575 * 125.91906 * 173.65449 * 17 15 5 19 19 N 1.36189 * 107.09193 * 180.02562 * 18 17 15 20 20 C 1.36677 * 132.29479 * 179.97438 * 19 18 17 21 21 C 1.34847 * 120.64240 * 180.32100 * 20 19 18 22 22 C 1.50698 * 119.82975 * 179.70206 * 21 20 19 23 23 C 1.40579 * 120.34134 * 359.39624 * 21 20 19 24 24 C 1.35893 * 119.72860 * 0.63260 * 23 21 20 25 25 C 1.37270 * 107.34437 * 0.02562 * 19 18 17 26 26 N 1.32238 * 108.37734 * 0.02562 * 25 19 18 27 27 H 1.09002 * 109.46434 * 299.99864 * 1 2 3 28 28 H 1.09000 * 109.47076 * 59.98837 * 1 2 3 29 29 H 1.08989 * 109.47442 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46861 * 60.01017 * 3 2 1 31 31 H 1.08991 * 109.47672 * 300.00531 * 3 2 1 32 32 H 1.09004 * 109.47158 * 305.01253 * 4 3 2 33 33 H 1.08993 * 109.47406 * 185.00433 * 4 3 2 34 34 H 1.08994 * 109.47711 * 23.36058 * 6 5 4 35 35 H 1.09005 * 109.46876 * 143.36635 * 6 5 4 36 36 H 0.96999 * 120.00168 * 180.02562 * 10 9 7 37 37 H 1.07993 * 126.45312 * 0.05756 * 18 17 15 38 38 H 1.07998 * 119.68022 * 0.04744 * 20 19 18 39 39 H 1.09007 * 109.47213 * 90.00455 * 22 21 20 40 40 H 1.09008 * 109.47372 * 209.99845 * 22 21 20 41 41 H 1.08997 * 109.47502 * 330.00513 * 22 21 20 42 42 H 1.08001 * 120.13407 * 180.28905 * 23 21 20 43 43 H 1.08001 * 120.32897 * 179.65381 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2529 6 6 4.1051 -0.8921 -1.3430 7 6 5.5404 -1.2845 -1.1044 8 1 6.2819 -0.5251 -0.9052 9 6 5.9070 -2.6132 -1.1405 10 7 5.0041 -3.5380 -1.3837 11 14 7.6859 -3.0998 -0.8442 12 1 8.1038 -2.6490 0.5077 13 1 7.8172 -4.5761 -0.9356 14 1 8.5511 -2.4610 -1.8683 15 6 4.2615 1.3338 -2.3219 16 8 4.2205 2.5453 -2.2273 17 6 4.6243 0.7058 -3.6073 18 6 4.8166 1.3582 -4.7917 19 7 5.1347 0.4150 -5.7211 20 6 5.4254 0.4984 -7.0540 21 6 5.7072 -0.6111 -7.7668 22 6 6.0186 -0.4986 -9.2369 23 6 5.7182 -1.8714 -7.1441 24 6 5.4306 -1.9713 -5.8197 25 6 5.1309 -0.8023 -5.0867 26 7 4.8209 -0.6091 -3.8158 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 1.6888 1.8463 0.8901 31 1 1.6887 1.8464 -0.8898 32 1 3.8515 0.5680 0.8408 33 1 3.9786 2.1764 0.0890 34 1 3.4705 -1.3605 -0.5908 35 1 3.7980 -1.2234 -2.3350 36 1 5.2619 -4.4728 -1.4087 37 1 4.7327 2.4217 -4.9594 38 1 5.4252 1.4618 -7.5421 39 1 7.0913 -0.3594 -9.3715 40 1 5.7038 -1.4097 -9.7458 41 1 5.4861 0.3547 -9.6569 42 1 5.9489 -2.7573 -7.7172 43 1 5.4308 -2.9353 -5.3328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859183715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:16 Heat of formation + Delta-G solvation = 5.795506 kcal Electronic energy + Delta-G solvation = -27009.376825 eV Core-core repulsion = 23249.168074 eV Total energy + Delta-G solvation = -3760.208752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.73311 -40.67506 -38.80988 -38.35534 -36.60462 -34.62529 -34.41872 -33.05141 -31.32169 -29.88715 -28.74547 -27.81672 -27.04584 -25.27315 -24.58559 -24.14104 -23.05127 -22.55088 -20.05744 -18.91141 -18.37918 -17.95977 -17.55649 -17.29029 -16.96246 -16.87746 -16.43970 -16.30648 -15.95084 -15.72404 -15.41017 -15.26946 -14.81964 -14.47257 -14.20322 -14.07835 -13.53529 -13.34526 -13.22150 -13.10886 -13.07557 -12.78847 -12.72100 -12.64042 -12.35178 -12.21351 -12.09879 -11.91161 -11.84390 -11.60072 -11.13637 -10.66255 -10.58042 -10.17560 -9.69389 -9.33208 -8.77327 -7.98860 -6.05290 -0.23811 0.29647 1.18515 1.38250 1.39842 1.47132 1.60901 2.31777 2.39907 2.51672 2.72629 2.95294 3.27657 3.32847 3.49628 3.79561 3.93279 4.05518 4.13960 4.15260 4.25850 4.37249 4.38859 4.51852 4.54646 4.55296 4.62582 4.77728 4.83326 4.87916 4.88942 4.93560 5.14422 5.17114 5.27742 5.35431 5.40473 5.59515 5.66764 5.96563 5.98141 6.18633 6.30054 6.33645 6.59850 6.85396 7.05056 7.34253 7.57836 9.08781 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.005375 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.681480 B = 5208.130154 C = 6875.264976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.057 3.943 4 C 0.111 3.889 5 N -0.578 5.578 6 C 0.259 3.741 7 C -0.507 4.507 8 H 0.030 0.970 9 C 0.030 3.970 10 N -0.915 5.915 11 Si 0.941 3.059 12 H -0.275 1.275 13 H -0.277 1.277 14 H -0.285 1.285 15 C 0.588 3.412 16 O -0.589 6.589 17 C -0.025 4.025 18 C -0.024 4.024 19 N -0.362 5.362 20 C 0.031 3.969 21 C -0.101 4.101 22 C -0.097 4.097 23 C -0.086 4.086 24 C -0.097 4.097 25 C 0.185 3.815 26 N -0.442 5.442 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.010 0.990 35 H 0.059 0.941 36 H 0.260 0.740 37 H 0.217 0.783 38 H 0.198 0.802 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.175 0.825 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 6.908 -14.223 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.020 4.020 4 C -0.011 4.011 5 N -0.306 5.306 6 C 0.138 3.862 7 C -0.546 4.546 8 H 0.048 0.952 9 C -0.169 4.169 10 N -0.556 5.556 11 Si 0.768 3.232 12 H -0.200 1.200 13 H -0.202 1.202 14 H -0.211 1.211 15 C 0.377 3.623 16 O -0.473 6.473 17 C -0.159 4.159 18 C -0.160 4.160 19 N -0.033 5.033 20 C -0.088 4.088 21 C -0.104 4.104 22 C -0.154 4.154 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.061 4.061 26 N -0.161 5.161 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.234 0.766 38 H 0.215 0.785 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.192 0.808 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.799 6.583 -13.509 15.286 hybrid contribution 0.769 0.173 0.270 0.834 sum -2.029 6.757 -13.239 15.001 Atomic orbital electron populations 1.22869 0.79955 1.03287 1.00669 1.88029 1.21249 1.28392 1.95484 1.22933 0.93232 0.84757 1.01090 1.21622 0.93305 0.99671 0.86535 1.48111 1.62132 1.09752 1.10600 1.19384 0.95165 0.73071 0.98569 1.21289 0.94345 0.91785 1.47195 0.95216 1.25333 0.99956 0.96261 0.95336 1.70040 1.34408 1.00516 1.50617 0.85906 0.81849 0.77197 0.78292 1.20017 1.20178 1.21100 1.17246 0.76650 0.85338 0.83082 1.90618 1.57815 1.13623 1.85242 1.20700 1.09467 0.90838 0.94891 1.22675 1.10129 0.96149 0.87092 1.42956 1.43139 1.08191 1.09014 1.22175 1.03532 1.03065 0.80063 1.19989 1.00314 0.90987 0.99106 1.20761 1.03238 1.04825 0.86537 1.21382 0.97581 0.99421 0.92553 1.20493 1.01429 0.95127 0.94695 1.21780 1.06986 0.87962 0.89356 1.71605 1.17159 1.15526 1.11830 0.92033 0.94102 0.89455 0.89362 0.94132 0.90129 0.88315 0.97168 0.92383 0.93119 0.76647 0.78521 0.89500 0.89347 0.89519 0.80799 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -15.99 9.66 -148.98 -1.44 -17.43 16 3 C 0.06 1.99 6.28 71.98 0.45 2.44 16 4 C 0.11 4.54 5.81 86.38 0.50 5.04 16 5 N -0.58 -28.48 2.44 -829.83 -2.02 -30.51 16 6 C 0.26 14.57 4.53 85.63 0.39 14.96 16 7 C -0.51 -30.18 8.34 25.60 0.21 -29.97 16 8 H 0.03 1.83 7.81 -2.91 -0.02 1.80 16 9 C 0.03 1.76 5.46 84.65 0.46 2.23 16 10 N -0.92 -55.43 13.29 21.45 0.28 -55.15 16 11 Si 0.94 46.61 29.54 68.60 2.03 48.63 16 12 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 15 C 0.59 28.63 7.61 86.71 0.66 29.29 16 16 O -0.59 -28.16 16.43 -3.99 -0.07 -28.23 16 17 C -0.03 -1.19 6.62 40.80 0.27 -0.92 16 18 C -0.02 -0.87 11.47 83.63 0.96 0.09 16 19 N -0.36 -12.03 2.93 -351.26 -1.03 -13.06 16 20 C 0.03 0.69 10.54 83.16 0.88 1.56 16 21 C -0.10 -1.87 5.85 -20.07 -0.12 -1.99 16 22 C -0.10 -0.84 10.00 71.24 0.71 -0.13 16 23 C -0.09 -1.93 9.73 22.30 0.22 -1.72 16 24 C -0.10 -3.29 10.11 22.45 0.23 -3.06 16 25 C 0.18 7.59 7.79 134.20 1.05 8.64 16 26 N -0.44 -22.03 7.05 -183.49 -1.29 -23.32 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 3.33 8.07 -2.39 -0.02 3.31 16 33 H 0.10 3.74 7.37 -2.39 -0.02 3.72 16 34 H 0.01 0.62 7.26 -2.39 -0.02 0.61 16 35 H 0.06 3.54 5.33 -2.38 -0.01 3.53 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.22 6.23 8.06 -2.91 -0.02 6.21 16 38 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.09 0.57 8.09 -2.38 -0.02 0.55 16 41 H 0.09 0.49 8.07 -2.39 -0.02 0.48 16 42 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.14 4.94 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -81.13 365.20 5.59 -75.54 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.01 Total: 15.02 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 8.12 Total: 28.51 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -4.06 Total: -122.04 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.50 Total: -45.66 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -81.13 5.59 -75.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859183715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.337 kcal (2) G-P(sol) polarization free energy of solvation -81.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds