Wall clock time and date at job start Tue Mar 31 2020 11:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 120.00606 * 2 1 4 4 C 1.38203 * 120.00128 * 180.27933 * 3 2 1 5 5 C 1.38264 * 120.00311 * 359.51313 * 4 3 2 6 6 N 1.48013 * 120.00197 * 180.25704 * 5 4 3 7 7 O 1.21799 * 120.00019 * 352.93001 * 6 5 4 8 8 O 1.21800 * 120.00098 * 172.93310 * 6 5 4 9 9 C 1.38210 * 119.99422 * 0.27745 * 5 4 3 10 10 C 1.50706 * 119.99874 * 179.97438 * 9 5 4 11 11 C 1.38216 * 119.99868 * 179.83481 * 2 1 3 12 12 C 1.50707 * 119.99713 * 359.97438 * 11 2 1 13 13 N 1.46895 * 109.47093 * 261.17833 * 12 11 2 14 14 C 1.46902 * 110.99878 * 191.14587 * 13 12 11 15 15 C 1.50697 * 109.46839 * 153.77871 * 14 13 12 16 16 H 1.08003 * 120.00552 * 354.01315 * 15 14 13 17 17 C 1.37881 * 120.00023 * 174.00820 * 15 14 13 18 18 N 1.31516 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00045 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46731 * 60.00737 * 19 17 15 21 21 H 1.48499 * 109.47022 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47206 * 300.00358 * 19 17 15 23 23 C 1.46902 * 110.99758 * 67.19761 * 13 12 11 24 24 C 1.53001 * 109.46981 * 189.22869 * 23 13 12 25 25 C 1.47194 * 109.47477 * 174.10167 * 24 23 13 26 26 N 5.71412 * 68.66404 * 100.19366 * 2 1 3 27 27 H 1.08997 * 109.47370 * 267.28477 * 1 2 3 28 28 H 1.09010 * 109.46793 * 27.28266 * 1 2 3 29 29 H 1.08995 * 109.47848 * 147.28041 * 1 2 3 30 30 H 1.08000 * 119.99928 * 0.06544 * 3 2 1 31 31 H 1.08010 * 120.00065 * 179.78617 * 4 3 2 32 32 H 1.08997 * 109.47044 * 82.58007 * 10 9 5 33 33 H 1.08997 * 109.46917 * 202.58449 * 10 9 5 34 34 H 1.09000 * 109.46612 * 322.58165 * 10 9 5 35 35 H 1.09003 * 109.46686 * 21.18287 * 12 11 2 36 36 H 1.09001 * 109.47000 * 141.17928 * 12 11 2 37 37 H 1.08991 * 109.47487 * 273.78516 * 14 13 12 38 38 H 1.09000 * 109.46856 * 33.78865 * 14 13 12 39 39 H 0.96996 * 119.99827 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47415 * 309.22273 * 23 13 12 41 41 H 1.08993 * 109.47090 * 69.23103 * 23 13 12 42 42 H 1.09003 * 109.46915 * 294.09979 * 24 23 13 43 43 H 1.09001 * 109.47251 * 54.09321 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2717 -0.0002 -0.0015 6 7 5.7518 -0.0003 -0.0020 7 8 6.3608 1.0460 -0.1360 8 8 6.3609 -1.0466 0.1316 9 6 3.5805 -1.1971 0.0029 10 6 4.3340 -2.5023 0.0070 11 6 2.1980 -1.1970 0.0035 12 6 1.4444 -2.5021 0.0078 13 7 1.3840 -3.0281 1.3780 14 6 0.8951 -4.4133 1.3891 15 6 1.4243 -5.1230 2.6086 16 1 2.1363 -4.6300 3.2539 17 6 0.9993 -6.4017 2.9008 18 7 0.1325 -7.0023 2.1149 19 14 1.6547 -7.2812 4.4129 20 1 1.3077 -6.5014 5.6282 21 1 1.0470 -8.6332 4.5015 22 1 3.1307 -7.4081 4.3108 23 6 0.5547 -2.1703 2.2351 24 6 0.6994 -2.6132 3.6924 25 6 -0.0172 -1.6694 4.5656 26 7 -0.5720 -0.9420 5.2385 27 1 -0.3634 -0.0487 1.0265 28 1 -0.3633 0.9134 -0.4711 29 1 -0.3634 -0.8645 -0.5554 30 1 1.6585 2.1326 0.0011 31 1 4.1205 2.1325 -0.0093 32 1 4.6309 -2.7471 1.0268 33 1 3.6937 -3.2926 -0.3847 34 1 5.2222 -2.4110 -0.6181 35 1 0.4327 -2.3386 -0.3637 36 1 1.9558 -3.2191 -0.6344 37 1 -0.1946 -4.4139 1.4125 38 1 1.2395 -4.9273 0.4917 39 1 -0.1661 -7.9020 2.3202 40 1 0.8800 -1.1347 2.1362 41 1 -0.4888 -2.2540 1.9318 42 1 0.2776 -3.6111 3.8124 43 1 1.7549 -2.6299 3.9640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877138929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:56 Heat of formation + Delta-G solvation = 51.417831 kcal Electronic energy + Delta-G solvation = -26948.475361 eV Core-core repulsion = 23190.244942 eV Total energy + Delta-G solvation = -3758.230419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.15753 -40.22011 -37.49919 -36.55776 -36.02693 -34.02209 -33.37362 -32.43389 -30.69070 -28.72661 -28.19157 -27.04328 -25.26148 -24.86506 -23.28678 -21.51810 -21.36706 -20.19857 -18.57387 -18.51001 -17.49795 -17.36892 -16.36792 -16.19495 -15.48794 -15.31858 -14.87698 -14.59678 -14.36458 -14.04000 -13.55281 -13.47300 -13.36699 -13.00594 -12.82138 -12.68186 -12.43666 -12.24927 -12.19933 -12.01792 -11.96456 -11.58134 -11.35663 -11.26944 -11.18963 -11.02124 -10.89616 -10.83248 -10.64891 -10.48398 -10.43078 -9.87061 -9.47187 -9.25410 -8.97877 -8.56465 -7.63618 -6.19238 -4.20974 -0.07653 0.92552 1.38590 1.52970 3.06728 3.15181 3.18576 3.24560 3.30552 3.33226 4.20962 4.29009 4.35987 4.37477 4.46001 4.69564 4.72452 5.00819 5.05844 5.16190 5.25125 5.29836 5.39286 5.46527 5.51961 5.55267 5.65218 5.69317 5.71128 5.84089 5.89586 5.99929 6.08775 6.23252 6.29973 6.31104 6.38308 6.62228 6.69501 6.88580 7.06970 7.59866 7.77539 7.78230 7.89084 7.93109 8.25701 8.85871 9.43167 10.90038 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.004399 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.725896 B = 6363.464135 C = 7338.004676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.025 4.025 3 C -0.132 4.132 4 C -0.055 4.055 5 C -0.061 4.061 6 N 0.036 4.964 7 O -0.185 6.185 8 O -0.154 6.154 9 C 0.019 3.981 10 C -0.129 4.129 11 C -0.076 4.076 12 C 0.088 3.912 13 N -0.525 5.525 14 C 0.188 3.812 15 C -0.511 4.511 16 H 0.070 0.930 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.275 1.275 23 C 0.072 3.928 24 C -0.033 4.033 25 C 0.219 3.781 26 N -0.471 5.471 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.006 0.994 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.142 0.858 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 12.327 -7.234 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 C -0.151 4.151 4 C -0.074 4.074 5 C -0.145 4.145 6 N 0.551 4.449 7 O -0.395 6.395 8 O -0.371 6.371 9 C 0.017 3.983 10 C -0.184 4.184 11 C -0.077 4.077 12 C -0.040 4.040 13 N -0.250 5.250 14 C 0.064 3.936 15 C -0.550 4.550 16 H 0.088 0.912 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.057 4.057 24 C -0.073 4.073 25 C -0.098 4.098 26 N -0.149 5.149 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.024 0.976 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.159 0.841 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.894 13.239 -6.067 14.591 hybrid contribution 0.131 -0.757 0.271 0.815 sum 1.025 12.483 -5.796 13.801 Atomic orbital electron populations 1.21162 0.90094 1.03771 1.03747 1.20255 0.97062 0.92410 0.92859 1.20947 0.92415 0.98474 1.03276 1.20900 0.94628 0.96731 0.95167 1.20917 0.78833 0.96616 1.18091 1.43577 1.03696 1.00175 0.97411 1.94501 1.69270 1.21443 1.54288 1.94501 1.69556 1.20645 1.52363 1.19754 0.93550 0.94344 0.90623 1.21311 1.00001 0.92109 1.05025 1.19740 0.91628 0.95856 1.00492 1.21153 0.97794 0.91876 0.93161 1.62169 1.52488 1.04584 1.05753 1.19897 0.94333 0.81057 0.98318 1.21149 1.25547 0.98930 1.09335 0.91182 1.24971 0.95019 0.97393 0.96872 1.69923 1.31483 1.14110 1.37720 0.86655 0.79451 0.78883 0.83098 1.20088 1.21431 1.19991 1.21907 0.95440 0.96450 0.91944 1.19802 1.00544 0.96565 0.90415 1.29854 0.92937 0.93310 0.93657 1.81109 1.11112 1.11686 1.10987 0.89682 0.90881 0.89938 0.84097 0.83535 0.88381 0.89900 0.89584 0.93509 0.89034 0.97626 0.95460 0.92676 0.92089 0.94804 0.84058 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.74 36.00 0.31 -0.81 16 2 C -0.02 -0.26 4.99 -104.62 -0.52 -0.78 16 3 C -0.13 -1.25 9.69 -39.59 -0.38 -1.63 16 4 C -0.05 -0.60 9.56 -39.58 -0.38 -0.98 16 5 C -0.06 -0.81 6.83 -79.95 -0.55 -1.36 16 6 N 0.04 0.55 4.45 33.96 0.15 0.70 16 7 O -0.19 -2.83 18.47 -29.46 -0.54 -3.37 16 8 O -0.15 -2.41 15.39 -29.46 -0.45 -2.87 16 9 C 0.02 0.25 5.88 -104.62 -0.62 -0.36 16 10 C -0.13 -1.72 8.35 36.01 0.30 -1.42 16 11 C -0.08 -0.93 4.68 -104.62 -0.49 -1.42 16 12 C 0.09 1.17 4.19 -4.98 -0.02 1.15 16 13 N -0.53 -8.38 4.46 -237.52 -1.06 -9.44 16 14 C 0.19 3.84 4.67 -4.98 -0.02 3.81 16 15 C -0.51 -11.58 6.67 -34.44 -0.23 -11.81 16 16 H 0.07 1.55 6.69 -52.48 -0.35 1.20 16 17 C 0.06 1.47 5.46 -17.82 -0.10 1.37 16 18 N -0.89 -23.39 13.29 55.43 0.74 -22.65 16 19 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C 0.07 1.05 3.65 -3.82 -0.01 1.03 16 24 C -0.03 -0.51 4.45 -29.52 -0.13 -0.64 16 25 C 0.22 3.51 15.43 -20.77 -0.32 3.19 16 26 N -0.47 -8.38 18.54 42.14 0.78 -7.60 16 27 H 0.08 0.77 6.63 -51.93 -0.34 0.43 16 28 H 0.07 0.48 8.07 -51.92 -0.42 0.06 16 29 H 0.08 0.71 6.02 -51.93 -0.31 0.40 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.15 1.37 7.63 -52.48 -0.40 0.97 16 32 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.09 5.85 -51.93 -0.30 0.79 16 34 H 0.09 1.13 5.93 -51.93 -0.31 0.82 16 35 H 0.05 0.57 5.66 -51.93 -0.29 0.28 16 36 H 0.09 1.24 5.95 -51.93 -0.31 0.93 16 37 H 0.01 0.13 7.76 -51.93 -0.40 -0.27 16 38 H 0.03 0.60 7.60 -51.93 -0.39 0.21 16 39 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.06 0.81 5.11 -51.93 -0.27 0.54 16 41 H 0.03 0.49 7.93 -51.93 -0.41 0.08 16 42 H 0.14 2.50 6.01 -51.93 -0.31 2.18 16 43 H 0.11 1.68 7.68 -51.93 -0.40 1.28 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -27.09 353.71 -8.44 -35.54 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.21 Total: 0.70 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.16 Total: -10.66 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.61 Total: -38.99 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -1.00 Total: -6.24 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.09 -8.44 -35.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877138929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.954 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds