Wall clock time and date at job start Tue Mar 31 2020 11:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54522 * 112.79243 * 2 1 4 4 O 1.44611 * 104.62664 * 262.92500 * 3 2 1 5 5 C 1.44613 * 104.49552 * 317.08629 * 4 3 2 6 6 C 1.54521 * 104.52111 * 42.85364 * 5 4 3 7 7 H 1.09006 * 112.79364 * 97.12768 * 6 5 4 8 8 C 1.54256 * 108.70937 * 222.95790 * 6 5 4 9 9 N 1.48079 * 104.78644 * 134.30207 * 8 6 5 10 10 C 1.34781 * 127.85228 * 140.09113 * 9 8 6 11 11 O 1.21573 * 119.99981 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99692 * 359.97438 * 10 9 8 13 13 C 1.39246 * 119.99888 * 174.85938 * 12 10 9 14 14 C 1.39684 * 119.57870 * 185.40802 * 13 12 10 15 15 C 1.38637 * 119.49718 * 179.74979 * 14 13 12 16 16 C 1.38350 * 118.67307 * 0.51328 * 15 14 13 17 17 C 1.40575 * 119.12841 * 359.72926 * 16 15 14 18 18 C 1.41335 * 119.78620 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00352 * 0.02562 * 18 17 16 20 20 C 1.40030 * 119.99929 * 180.02562 * 18 17 16 21 21 N 1.30741 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47036 * 90.00098 * 22 20 18 24 24 H 1.48503 * 109.47216 * 209.99591 * 22 20 18 25 25 H 1.48500 * 109.47337 * 329.99869 * 22 20 18 26 26 N 1.31910 * 119.57515 * 5.67816 * 13 12 10 27 27 C 1.48089 * 104.30092 * 320.07202 * 9 8 6 28 28 H 1.08998 * 109.47044 * 58.98832 * 1 2 3 29 29 H 1.09001 * 109.47342 * 178.98176 * 1 2 3 30 30 H 1.08995 * 109.47407 * 298.98166 * 1 2 3 31 31 H 1.09005 * 110.42531 * 144.10283 * 3 2 1 32 32 H 1.09007 * 110.42418 * 21.74773 * 3 2 1 33 33 H 1.09003 * 110.42224 * 161.61024 * 5 4 3 34 34 H 1.08998 * 110.42465 * 283.96610 * 5 4 3 35 35 H 1.09000 * 110.37421 * 253.13003 * 8 6 5 36 36 H 1.08998 * 110.37744 * 15.47426 * 8 6 5 37 37 H 0.96994 * 120.00202 * 354.85495 * 12 10 9 38 38 H 1.07996 * 120.24656 * 359.97438 * 14 13 12 39 39 H 1.07998 * 120.66500 * 180.24828 * 15 14 13 40 40 H 1.07994 * 120.44093 * 179.75287 * 16 15 14 41 41 H 0.97007 * 119.99868 * 180.02562 * 21 20 18 42 42 H 1.09002 * 110.37723 * 158.75212 * 27 9 8 43 43 H 1.08998 * 110.37263 * 280.99257 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1286 1.4246 0.0000 4 8 2.4289 1.6945 -1.3886 5 6 3.0213 0.4685 -1.8757 6 6 2.1395 -0.6516 -1.2795 7 1 1.3812 -1.0083 -1.9766 8 6 3.0552 -1.7811 -0.7645 9 7 2.5198 -2.1211 0.5736 10 6 2.3868 -3.3438 1.1249 11 8 1.9258 -3.4592 2.2439 12 7 2.7648 -4.4386 0.4355 13 6 2.7281 -5.6909 1.0431 14 6 3.2277 -6.8030 0.3612 15 6 3.1950 -8.0482 0.9697 16 6 2.6546 -8.1528 2.2390 17 6 2.1632 -6.9972 2.8709 18 6 1.6088 -7.0880 4.1678 19 1 1.5640 -8.0429 4.6703 20 6 1.1175 -5.9398 4.8011 21 7 1.1722 -4.7838 4.1930 22 14 0.3840 -6.0600 6.5149 23 1 1.4529 -5.8586 7.5260 24 1 -0.6582 -5.0154 6.6816 25 1 -0.2256 -7.4015 6.6995 26 7 2.2171 -5.8129 2.2530 27 6 2.1641 -0.8126 1.1687 28 1 -0.3633 0.5295 -0.8808 29 1 -0.3634 -1.0275 -0.0183 30 1 -0.3634 0.4979 0.8989 31 1 3.0388 1.4547 0.5989 32 1 1.4012 2.1428 0.3785 33 1 2.9905 0.4377 -2.9649 34 1 4.0482 0.3755 -1.5222 35 1 3.0003 -2.6455 -1.4261 36 1 4.0835 -1.4288 -0.6834 37 1 3.0623 -4.3540 -0.4838 38 1 3.6395 -6.6929 -0.6311 39 1 3.5798 -8.9200 0.4614 40 1 2.6112 -9.1096 2.7381 41 1 0.8322 -3.9883 4.6319 42 1 1.4355 -0.9448 1.9685 43 1 3.0557 -0.3129 1.5473 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:15 Heat of formation + Delta-G solvation = 5.087155 kcal Electronic energy + Delta-G solvation = -27132.600982 eV Core-core repulsion = 23372.361514 eV Total energy + Delta-G solvation = -3760.239468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81983 -39.16392 -37.64980 -35.92399 -34.08590 -33.06305 -32.46616 -30.98102 -30.27265 -29.00832 -27.00216 -26.29104 -25.55769 -24.68770 -22.21996 -21.72861 -21.14255 -19.38820 -19.13562 -18.06037 -16.98063 -16.42034 -16.09594 -15.99403 -15.53504 -14.72603 -14.69910 -14.45753 -14.25950 -13.85730 -13.65432 -13.50554 -13.18965 -13.02863 -12.81623 -12.57246 -12.24944 -11.98265 -11.88181 -11.67970 -11.20974 -11.14214 -11.00420 -10.94055 -10.91573 -10.76750 -10.63351 -10.44644 -9.99507 -9.91288 -9.70099 -9.12799 -9.01620 -8.25345 -7.94161 -7.21224 -6.93889 -6.09808 -4.37703 2.84853 3.01727 3.13587 3.18609 3.21000 3.28782 3.71288 4.02828 4.08441 4.11005 4.38789 4.57062 4.65797 4.80211 4.85519 4.95028 4.97544 4.99406 5.32359 5.43203 5.48575 5.49926 5.54883 5.67004 5.80427 5.83787 5.90062 5.96017 6.05823 6.08961 6.15285 6.32623 6.49852 6.51284 6.74763 6.81937 6.86373 7.23854 7.41691 7.63058 7.76129 7.82635 8.17874 8.29183 8.64072 8.80075 9.07514 9.55683 10.27918 10.51318 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.004000 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.263593 B = 6997.996965 C = 8471.262380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.054 3.946 4 O -0.374 6.374 5 C 0.050 3.950 6 C -0.130 4.130 7 H 0.099 0.901 8 C 0.108 3.892 9 N -0.648 5.648 10 C 0.689 3.311 11 O -0.456 6.456 12 N -0.670 5.670 13 C 0.386 3.614 14 C -0.358 4.358 15 C -0.035 4.035 16 C -0.306 4.306 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.650 5.650 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.472 5.472 27 C 0.139 3.861 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.272 0.728 42 H 0.086 0.914 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 12.087 -10.118 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 C -0.023 4.023 4 O -0.293 6.293 5 C -0.027 4.027 6 C -0.150 4.150 7 H 0.117 0.883 8 C -0.017 4.017 9 N -0.391 5.391 10 C 0.389 3.611 11 O -0.319 6.319 12 N -0.319 5.319 13 C 0.147 3.853 14 C -0.384 4.384 15 C -0.059 4.059 16 C -0.330 4.330 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.268 5.268 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.191 5.191 27 C 0.014 3.986 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.129 13.057 -8.768 15.768 hybrid contribution 0.342 -0.945 -0.304 1.050 sum 1.470 12.112 -9.072 15.204 Atomic orbital electron populations 1.21555 0.91971 1.02639 1.01944 1.23230 0.96948 0.95022 0.95394 1.23641 0.99615 0.95270 0.83784 1.89242 1.81292 1.34343 1.24398 1.23620 0.96010 0.83185 0.99912 1.23673 0.98132 0.96072 0.97077 0.88251 1.22308 0.96523 0.97229 0.85612 1.48341 1.69012 1.04702 1.17052 1.15909 0.81140 0.78719 0.85317 1.91398 1.43614 1.81968 1.14950 1.42553 1.69207 1.04827 1.15314 1.18337 0.93126 0.82181 0.91676 1.20415 1.22332 0.93445 1.02207 1.20535 0.95861 0.95098 0.94447 1.21623 1.14442 0.99064 0.97836 1.18382 0.88773 0.85588 0.92609 1.19581 1.32675 0.95024 0.98281 0.89969 1.26191 0.96378 0.95625 0.99066 1.70344 1.24765 0.98125 1.33596 0.86540 0.79315 0.79018 0.83221 1.19685 1.20358 1.18766 1.68679 1.19881 1.24884 1.05621 1.22336 0.99151 0.82075 0.95009 0.92132 0.91847 0.92019 0.91663 0.88816 0.88972 0.91709 0.90922 0.91388 0.77282 0.89217 0.88606 0.88564 0.91663 0.89566 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.87 37.16 0.33 -0.97 16 2 C -0.10 -1.10 1.15 -150.61 -0.17 -1.27 16 3 C 0.05 0.50 6.78 37.96 0.26 0.76 16 4 O -0.37 -4.00 11.69 -35.23 -0.41 -4.42 16 5 C 0.05 0.43 7.13 37.96 0.27 0.70 16 6 C -0.13 -1.26 3.83 -87.57 -0.34 -1.59 16 7 H 0.10 0.94 7.98 -51.93 -0.41 0.53 16 8 C 0.11 1.18 6.49 -2.52 -0.02 1.16 16 9 N -0.65 -10.07 3.31 -174.29 -0.58 -10.65 16 10 C 0.69 14.54 8.53 -86.91 -0.74 13.80 16 11 O -0.46 -11.88 12.37 5.30 0.07 -11.81 16 12 N -0.67 -13.71 5.36 -15.78 -0.08 -13.79 16 13 C 0.39 9.61 7.43 -154.99 -1.15 8.46 16 14 C -0.36 -8.13 9.95 -38.89 -0.39 -8.52 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.31 -7.80 9.83 -38.66 -0.38 -8.18 16 17 C 0.27 7.73 6.55 -85.00 -0.56 7.17 16 18 C -0.43 -11.83 9.14 -37.73 -0.34 -12.18 16 19 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 20 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 21 N -0.65 -18.30 8.99 55.55 0.50 -17.80 16 22 Si 0.89 19.45 29.56 -169.99 -5.02 14.43 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 N -0.47 -13.48 5.74 -10.26 -0.06 -13.54 16 27 C 0.14 1.84 6.31 -1.66 -0.01 1.83 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.57 7.18 -51.93 -0.37 0.19 16 32 H 0.09 0.78 7.94 -51.93 -0.41 0.36 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.50 7.17 -51.93 -0.37 0.13 16 35 H 0.07 0.72 6.80 -51.93 -0.35 0.37 16 36 H 0.07 0.66 7.14 -51.93 -0.37 0.29 16 37 H 0.39 6.35 7.08 -40.82 -0.29 6.06 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 41 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 42 H 0.09 1.32 7.70 -51.93 -0.40 0.92 16 43 H 0.07 0.80 7.20 -51.93 -0.37 0.43 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -33.83 345.03 -9.99 -43.82 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.86 Total: 7.16 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.73 Total: 1.39 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.22 Total: -55.77 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.35 Total: -16.23 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.83 -9.99 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.907 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds