Wall clock time and date at job start Tue Mar 31 2020 11:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54522 * 112.79243 * 2 1 4 4 O 1.44611 * 104.62664 * 262.92500 * 3 2 1 5 5 C 1.44613 * 104.49552 * 317.08629 * 4 3 2 6 6 C 1.54521 * 104.52111 * 42.85364 * 5 4 3 7 7 H 1.09006 * 112.79364 * 97.12768 * 6 5 4 8 8 C 1.54256 * 108.70937 * 222.95790 * 6 5 4 9 9 N 1.48079 * 104.78644 * 134.30207 * 8 6 5 10 10 C 1.34781 * 127.85228 * 140.09113 * 9 8 6 11 11 O 1.21573 * 119.99981 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99692 * 359.97438 * 10 9 8 13 13 C 1.39246 * 119.99888 * 174.85938 * 12 10 9 14 14 C 1.39684 * 119.57870 * 185.40802 * 13 12 10 15 15 C 1.38637 * 119.49718 * 179.74979 * 14 13 12 16 16 C 1.38350 * 118.67307 * 0.51328 * 15 14 13 17 17 C 1.40575 * 119.12841 * 359.72926 * 16 15 14 18 18 C 1.41335 * 119.78620 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00352 * 0.02562 * 18 17 16 20 20 C 1.40030 * 119.99929 * 180.02562 * 18 17 16 21 21 N 1.30741 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47036 * 90.00098 * 22 20 18 24 24 H 1.48503 * 109.47216 * 209.99591 * 22 20 18 25 25 H 1.48500 * 109.47337 * 329.99869 * 22 20 18 26 26 N 1.31910 * 119.57515 * 5.67816 * 13 12 10 27 27 C 1.48089 * 104.30092 * 320.07202 * 9 8 6 28 28 H 1.08998 * 109.47044 * 58.98832 * 1 2 3 29 29 H 1.09001 * 109.47342 * 178.98176 * 1 2 3 30 30 H 1.08995 * 109.47407 * 298.98166 * 1 2 3 31 31 H 1.09005 * 110.42531 * 144.10283 * 3 2 1 32 32 H 1.09007 * 110.42418 * 21.74773 * 3 2 1 33 33 H 1.09003 * 110.42224 * 161.61024 * 5 4 3 34 34 H 1.08998 * 110.42465 * 283.96610 * 5 4 3 35 35 H 1.09000 * 110.37421 * 253.13003 * 8 6 5 36 36 H 1.08998 * 110.37744 * 15.47426 * 8 6 5 37 37 H 0.96994 * 120.00202 * 354.85495 * 12 10 9 38 38 H 1.07996 * 120.24656 * 359.97438 * 14 13 12 39 39 H 1.07998 * 120.66500 * 180.24828 * 15 14 13 40 40 H 1.07994 * 120.44093 * 179.75287 * 16 15 14 41 41 H 0.97007 * 119.99868 * 180.02562 * 21 20 18 42 42 H 1.09002 * 110.37723 * 158.75212 * 27 9 8 43 43 H 1.08998 * 110.37263 * 280.99257 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1286 1.4246 0.0000 4 8 2.4289 1.6945 -1.3886 5 6 3.0213 0.4685 -1.8757 6 6 2.1395 -0.6516 -1.2795 7 1 1.3812 -1.0083 -1.9766 8 6 3.0552 -1.7811 -0.7645 9 7 2.5198 -2.1211 0.5736 10 6 2.3868 -3.3438 1.1249 11 8 1.9258 -3.4592 2.2439 12 7 2.7648 -4.4386 0.4355 13 6 2.7281 -5.6909 1.0431 14 6 3.2277 -6.8030 0.3612 15 6 3.1950 -8.0482 0.9697 16 6 2.6546 -8.1528 2.2390 17 6 2.1632 -6.9972 2.8709 18 6 1.6088 -7.0880 4.1678 19 1 1.5640 -8.0429 4.6703 20 6 1.1175 -5.9398 4.8011 21 7 1.1722 -4.7838 4.1930 22 14 0.3840 -6.0600 6.5149 23 1 1.4529 -5.8586 7.5260 24 1 -0.6582 -5.0154 6.6816 25 1 -0.2256 -7.4015 6.6995 26 7 2.2171 -5.8129 2.2530 27 6 2.1641 -0.8126 1.1687 28 1 -0.3633 0.5295 -0.8808 29 1 -0.3634 -1.0275 -0.0183 30 1 -0.3634 0.4979 0.8989 31 1 3.0388 1.4547 0.5989 32 1 1.4012 2.1428 0.3785 33 1 2.9905 0.4377 -2.9649 34 1 4.0482 0.3755 -1.5222 35 1 3.0003 -2.6455 -1.4261 36 1 4.0835 -1.4288 -0.6834 37 1 3.0623 -4.3540 -0.4838 38 1 3.6395 -6.6929 -0.6311 39 1 3.5798 -8.9200 0.4614 40 1 2.6112 -9.1096 2.7381 41 1 0.8322 -3.9883 4.6319 42 1 1.4355 -0.9448 1.9685 43 1 3.0557 -0.3129 1.5473 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:14 Heat of formation + Delta-G solvation = -16.698792 kcal Electronic energy + Delta-G solvation = -27133.545692 eV Core-core repulsion = 23372.361514 eV Total energy + Delta-G solvation = -3761.184177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83414 -40.71841 -39.32194 -37.06471 -35.91544 -34.87868 -33.55206 -32.22267 -31.89951 -30.82348 -28.05612 -27.45819 -27.07032 -25.87498 -23.63369 -23.01819 -22.86891 -20.73003 -20.29253 -19.75007 -18.55731 -17.86894 -17.25705 -16.94194 -16.53785 -16.30441 -16.25029 -15.95925 -15.67908 -15.53560 -14.92448 -14.67192 -14.60848 -14.33051 -13.99067 -13.86903 -13.71590 -13.33554 -13.15821 -12.89405 -12.72604 -12.64773 -12.55140 -12.32396 -12.02741 -11.83887 -11.76253 -11.75105 -11.67350 -11.53285 -10.88368 -10.84214 -10.72079 -9.90229 -9.56400 -9.12179 -8.79031 -8.02630 -6.41547 0.95851 1.27991 1.38738 1.50886 1.53593 1.61799 2.26369 2.50063 2.93721 3.02925 3.06510 3.23867 3.67761 3.76325 3.96892 4.06012 4.07234 4.11844 4.21610 4.33370 4.52436 4.54849 4.67626 4.70289 4.73395 4.78310 4.81123 4.86269 4.90438 4.96725 4.97451 5.03269 5.05550 5.10216 5.25432 5.27708 5.38792 5.67566 5.78312 5.84465 5.92756 6.05996 6.28512 6.40109 6.82608 7.05630 7.14349 7.95082 8.37338 8.58096 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.004000 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.263593 B = 6997.996965 C = 8471.262380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.099 4.099 3 C 0.058 3.942 4 O -0.389 6.389 5 C 0.053 3.947 6 C -0.124 4.124 7 H 0.103 0.897 8 C 0.104 3.896 9 N -0.646 5.646 10 C 0.681 3.319 11 O -0.514 6.514 12 N -0.659 5.659 13 C 0.364 3.636 14 C -0.345 4.345 15 C -0.032 4.032 16 C -0.330 4.330 17 C 0.237 3.763 18 C -0.467 4.467 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.687 5.687 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.255 1.255 26 N -0.508 5.508 27 C 0.135 3.865 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.268 0.732 42 H 0.055 0.945 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.958 12.838 -12.176 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 C -0.019 4.019 4 O -0.308 6.308 5 C -0.024 4.024 6 C -0.144 4.144 7 H 0.122 0.878 8 C -0.018 4.018 9 N -0.388 5.388 10 C 0.381 3.619 11 O -0.382 6.382 12 N -0.310 5.310 13 C 0.124 3.876 14 C -0.370 4.370 15 C -0.056 4.056 16 C -0.353 4.353 17 C 0.112 3.888 18 C -0.498 4.498 19 H 0.104 0.896 20 C -0.216 4.216 21 N -0.306 5.306 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.178 1.178 26 N -0.227 5.227 27 C 0.011 3.989 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.191 13.848 -10.920 17.771 hybrid contribution 0.114 -1.160 0.125 1.173 sum 2.305 12.688 -10.795 16.817 Atomic orbital electron populations 1.21522 0.92183 1.01226 1.02852 1.23169 0.96715 0.95660 0.94537 1.23646 1.00230 0.94269 0.83718 1.89241 1.81556 1.35225 1.24738 1.23734 0.96002 0.81653 1.01012 1.23655 0.98181 0.95958 0.96557 0.87825 1.22633 0.97647 0.98373 0.83185 1.48211 1.68112 1.03541 1.18930 1.16148 0.80725 0.80054 0.84953 1.91377 1.46015 1.83263 1.17509 1.42384 1.68902 1.03604 1.16088 1.18850 0.93019 0.84367 0.91374 1.20896 1.20103 0.92577 1.03473 1.21021 0.94371 0.96775 0.93479 1.21815 1.15506 0.98662 0.99334 1.18879 0.89625 0.86791 0.93514 1.19911 1.34798 0.95825 0.99233 0.89568 1.27055 0.96368 0.94875 1.03252 1.70566 1.26083 0.98605 1.35332 0.85347 0.78397 0.79227 0.77561 1.19079 1.19932 1.17818 1.68644 1.21154 1.25414 1.07486 1.22515 0.99272 0.81574 0.95507 0.90683 0.94377 0.91650 0.90764 0.87770 0.87046 0.90482 0.89616 0.89277 0.74860 0.85052 0.84331 0.87677 0.92126 0.92619 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.87 71.98 0.64 -1.84 16 2 C -0.10 -1.96 1.15 -49.65 -0.06 -2.01 16 3 C 0.06 0.96 6.78 72.50 0.49 1.45 16 4 O -0.39 -7.12 11.69 -148.98 -1.74 -8.87 16 5 C 0.05 0.71 7.13 72.50 0.52 1.23 16 6 C -0.12 -2.08 3.83 -8.82 -0.03 -2.11 16 7 H 0.10 1.70 7.98 -2.38 -0.02 1.68 16 8 C 0.10 2.02 6.49 86.50 0.56 2.58 16 9 N -0.65 -19.90 3.31 -823.61 -2.73 -22.63 16 10 C 0.68 29.41 8.53 179.05 1.53 30.94 16 11 O -0.51 -28.25 12.37 -3.94 -0.05 -28.30 16 12 N -0.66 -26.73 5.36 -322.12 -1.73 -28.45 16 13 C 0.36 18.12 7.43 133.26 0.99 19.11 16 14 C -0.34 -14.92 9.95 22.71 0.23 -14.69 16 15 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 16 C -0.33 -16.93 9.83 22.87 0.22 -16.71 16 17 C 0.24 14.02 6.55 40.19 0.26 14.28 16 18 C -0.47 -27.18 9.14 23.47 0.21 -26.97 16 19 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 20 C 0.01 0.56 5.50 85.29 0.47 1.03 16 21 N -0.69 -40.87 8.99 21.84 0.20 -40.68 16 22 Si 0.97 41.65 29.56 68.60 2.03 43.68 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 26 N -0.51 -30.03 5.74 -186.36 -1.07 -31.10 16 27 C 0.13 3.59 6.31 87.05 0.55 4.14 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.10 7.18 -2.38 -0.02 1.09 16 32 H 0.10 1.49 7.94 -2.38 -0.02 1.48 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 0.88 7.17 -2.39 -0.02 0.86 16 35 H 0.09 1.45 6.80 -2.39 -0.02 1.43 16 36 H 0.09 1.42 7.14 -2.39 -0.02 1.40 16 37 H 0.41 12.55 7.08 -92.71 -0.66 11.90 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 41 H 0.27 15.10 8.29 -92.70 -0.77 14.33 16 42 H 0.06 1.82 7.70 -2.39 -0.02 1.80 16 43 H 0.08 1.90 7.20 -2.39 -0.02 1.88 16 Total: -1.00 -78.45 345.03 2.10 -76.35 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.38 Total: 30.74 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.81 Total: 9.24 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -5.33 Total: -122.85 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.79 Total: -37.16 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -78.45 2.10 -76.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.652 kcal (2) G-P(sol) polarization free energy of solvation -78.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds