Wall clock time and date at job start Tue Mar 31 2020 11:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.51256 * 111.27690 * 2 1 4 4 O 1.46049 * 102.69816 * 72.44378 * 3 2 1 5 5 C 1.45720 * 108.92722 * 26.03652 * 4 3 2 6 6 C 1.49309 * 104.98630 * 6.58537 * 5 4 3 7 7 H 1.09006 * 108.55793 * 77.62905 * 6 5 4 8 8 C 1.49054 * 130.11709 * 212.37729 * 6 5 4 9 9 N 1.49421 * 104.61689 * 147.99252 * 8 6 5 10 10 C 1.34771 * 126.16603 * 173.05403 * 9 8 6 11 11 O 1.21574 * 120.00636 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99837 * 0.02562 * 10 9 8 13 13 C 1.39247 * 120.00128 * 174.84843 * 12 10 9 14 14 C 1.39677 * 119.57460 * 185.39654 * 13 12 10 15 15 C 1.38655 * 119.49422 * 179.72860 * 14 13 12 16 16 C 1.38351 * 118.66753 * 0.53194 * 15 14 13 17 17 C 1.40575 * 119.13361 * 359.73183 * 16 15 14 18 18 C 1.41333 * 119.78784 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.40030 * 119.99955 * 179.97438 * 18 17 16 21 21 N 1.30736 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99648 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47239 * 89.99989 * 22 20 18 24 24 H 1.48509 * 109.46604 * 209.99889 * 22 20 18 25 25 H 1.48494 * 109.47280 * 329.99471 * 22 20 18 26 26 N 1.31903 * 119.57371 * 5.66771 * 13 12 10 27 27 C 1.49758 * 107.67604 * 353.05723 * 9 8 6 28 28 H 1.09007 * 109.47028 * 61.01879 * 1 2 3 29 29 H 1.09002 * 109.47247 * 181.01746 * 1 2 3 30 30 H 1.08994 * 109.47365 * 301.01961 * 1 2 3 31 31 H 1.09005 * 110.76459 * 314.13835 * 3 2 1 32 32 H 1.09005 * 110.76664 * 190.74499 * 3 2 1 33 33 H 1.08997 * 110.35560 * 125.49620 * 5 4 3 34 34 H 1.09004 * 110.35502 * 247.68449 * 5 4 3 35 35 H 1.09003 * 110.36518 * 29.22002 * 8 6 5 36 36 H 1.08998 * 110.52097 * 266.84679 * 8 6 5 37 37 H 0.96998 * 119.99728 * 354.85260 * 12 10 9 38 38 H 1.08000 * 120.25602 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.66004 * 180.28463 * 15 14 13 40 40 H 1.07996 * 120.43204 * 179.74918 * 16 15 14 41 41 H 0.96999 * 120.00073 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.82914 * 215.84556 * 27 9 8 43 43 H 1.09004 * 110.99926 * 92.34961 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0789 1.4095 0.0000 4 8 1.7949 1.8646 1.3584 5 6 1.7256 0.7064 2.2401 6 6 2.1406 -0.4500 1.3918 7 1 3.2259 -0.4350 1.2917 8 6 1.7070 -1.8755 1.4326 9 7 1.7777 -2.3320 0.0116 10 6 1.6021 -3.5938 -0.4281 11 8 1.6843 -3.8409 -1.6156 12 7 1.3343 -4.5819 0.4487 13 6 1.0471 -5.8637 -0.0131 14 6 0.6604 -6.8528 0.8941 15 6 0.3692 -8.1272 0.4317 16 6 0.4826 -8.3836 -0.9231 17 6 0.8820 -7.3471 -1.7847 18 6 1.0018 -7.5937 -3.1713 19 1 0.7871 -8.5759 -3.5656 20 6 1.3988 -6.5643 -4.0336 21 7 1.6592 -5.3754 -3.5562 22 14 1.5564 -6.8900 -5.8662 23 1 0.2588 -6.6107 -6.5320 24 1 2.6059 -6.0079 -6.4372 25 1 1.9301 -8.3102 -6.0862 26 7 1.1488 -6.1296 -1.3011 27 6 2.0788 -1.1348 -0.8361 28 1 -0.3633 0.4980 -0.8990 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5295 0.8806 31 1 1.5577 2.0271 -0.7315 32 1 3.1522 1.4062 -0.1900 33 1 2.4112 0.8269 3.0788 34 1 0.7068 0.5653 2.6013 35 1 0.6857 -1.9509 1.8059 36 1 2.3826 -2.4627 2.0547 37 1 1.3417 -4.3999 1.4015 38 1 0.5848 -6.6257 1.9473 39 1 0.0640 -8.9050 1.1160 40 1 0.2668 -9.3670 -1.3136 41 1 1.9339 -4.6623 -4.1536 42 1 1.5604 -1.1971 -1.7929 43 1 3.1526 -1.0220 -0.9855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:18 Heat of formation + Delta-G solvation = 27.026483 kcal Electronic energy + Delta-G solvation = -27207.142515 eV Core-core repulsion = 23447.854408 eV Total energy + Delta-G solvation = -3759.288107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46293 -39.20694 -37.66959 -36.08333 -34.07772 -33.02184 -32.03303 -31.01209 -30.26640 -28.97230 -27.41212 -26.87500 -25.80685 -25.14155 -21.94612 -21.16211 -20.79737 -19.57759 -19.16178 -17.96652 -17.08898 -16.83069 -16.05948 -15.86982 -15.62720 -14.92049 -14.69098 -14.44386 -14.39508 -14.09452 -13.69740 -13.46544 -12.94499 -12.82582 -12.79966 -12.43600 -12.27485 -12.18200 -11.98742 -11.85550 -11.72062 -11.26020 -11.13626 -10.93302 -10.87374 -10.63210 -10.44882 -10.35227 -9.91417 -9.83679 -9.69702 -9.12778 -9.01407 -8.24409 -7.93903 -7.20857 -6.93562 -6.09669 -4.37533 2.84642 2.89042 3.13778 3.18664 3.21075 3.28896 3.37839 3.55226 4.08546 4.12387 4.32128 4.45140 4.69521 4.81860 4.89649 4.96731 5.02415 5.13311 5.25878 5.34974 5.42080 5.51595 5.59056 5.60874 5.80299 5.82807 5.87655 5.91904 6.05398 6.08970 6.15176 6.24916 6.43553 6.50880 6.72803 6.81925 6.86600 7.23379 7.39023 7.63129 7.74375 7.82913 8.17679 8.28826 8.62831 8.80185 9.07735 9.55601 10.28215 10.51489 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.003928 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.682951 B = 7127.112613 C = 8538.198986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.077 3.923 4 O -0.386 6.386 5 C 0.080 3.920 6 C -0.157 4.157 7 H 0.083 0.917 8 C 0.130 3.870 9 N -0.651 5.651 10 C 0.686 3.314 11 O -0.456 6.456 12 N -0.670 5.670 13 C 0.386 3.614 14 C -0.358 4.358 15 C -0.035 4.035 16 C -0.307 4.307 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.650 5.650 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.472 5.472 27 C 0.160 3.840 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.394 0.606 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.272 0.728 42 H 0.085 0.915 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 13.211 9.027 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.129 4.129 3 C 0.000 4.000 4 O -0.306 6.306 5 C 0.003 3.997 6 C -0.176 4.176 7 H 0.102 0.898 8 C 0.007 3.993 9 N -0.397 5.397 10 C 0.386 3.614 11 O -0.319 6.319 12 N -0.318 5.318 13 C 0.147 3.853 14 C -0.384 4.384 15 C -0.060 4.060 16 C -0.330 4.330 17 C 0.147 3.853 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.268 5.268 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.191 5.191 27 C 0.037 3.963 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.309 14.010 7.400 15.898 hybrid contribution -0.082 -0.927 0.470 1.043 sum 1.226 13.083 7.871 15.317 Atomic orbital electron populations 1.21698 0.91999 1.02980 1.02263 1.22704 0.97978 0.95220 0.97000 1.22606 0.99920 0.92789 0.84647 1.89377 1.93409 1.29840 1.17969 1.21895 1.01581 0.83935 0.92279 1.22356 1.02384 0.95624 0.97246 0.89844 1.20671 1.01086 0.92487 0.85054 1.49192 1.78317 1.06381 1.05772 1.15967 0.80338 0.78755 0.86343 1.91401 1.50291 1.78442 1.11813 1.42559 1.73124 1.07708 1.08448 1.18338 0.92856 0.82420 0.91710 1.20422 1.25297 0.95395 0.97290 1.20541 0.95850 0.94623 0.94938 1.21622 1.17403 1.00110 0.93842 1.18383 0.87794 0.85788 0.93385 1.19580 1.38302 0.97254 0.90441 0.89977 1.26187 0.95581 0.95296 1.00186 1.70337 1.21709 0.99851 1.34935 0.86540 0.78584 0.79405 0.83569 1.19689 1.20361 1.18773 1.68678 1.21430 1.20589 1.08376 1.21139 0.99495 0.81570 0.94132 0.91890 0.91475 0.92016 0.88929 0.91323 0.90226 0.90982 0.91616 0.91253 0.77273 0.89210 0.88615 0.88577 0.91658 0.89674 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.28 37.16 0.31 -1.09 16 2 C -0.13 -1.31 1.23 -153.22 -0.19 -1.49 16 3 C 0.08 0.70 6.97 36.28 0.25 0.95 16 4 O -0.39 -4.03 11.37 -35.23 -0.40 -4.43 16 5 C 0.08 0.67 6.96 35.34 0.25 0.92 16 6 C -0.16 -1.46 2.58 -91.33 -0.24 -1.70 16 7 H 0.08 0.79 7.94 -51.93 -0.41 0.38 16 8 C 0.13 1.42 5.49 -4.36 -0.02 1.40 16 9 N -0.65 -9.96 2.91 -177.58 -0.52 -10.48 16 10 C 0.69 14.35 8.49 -86.92 -0.74 13.61 16 11 O -0.46 -11.81 12.44 5.30 0.07 -11.75 16 12 N -0.67 -13.61 5.35 -15.79 -0.08 -13.70 16 13 C 0.39 9.58 7.43 -155.00 -1.15 8.43 16 14 C -0.36 -8.12 9.96 -38.89 -0.39 -8.50 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.31 -7.80 9.83 -38.66 -0.38 -8.18 16 17 C 0.27 7.72 6.55 -85.00 -0.56 7.16 16 18 C -0.43 -11.83 9.14 -37.73 -0.34 -12.18 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 20 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 21 N -0.65 -18.27 8.99 55.55 0.50 -17.77 16 22 Si 0.89 19.45 29.56 -169.99 -5.02 14.42 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 N -0.47 -13.45 5.74 -10.26 -0.06 -13.51 16 27 C 0.16 2.11 6.13 -3.10 -0.02 2.09 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.07 0.85 6.97 -51.93 -0.36 0.49 16 30 H 0.06 0.60 6.44 -51.93 -0.33 0.27 16 31 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.57 7.27 -51.93 -0.38 0.19 16 35 H 0.07 0.68 7.76 -51.93 -0.40 0.28 16 36 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 37 H 0.39 6.32 7.65 -40.82 -0.31 6.01 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 42 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -33.49 343.45 -10.02 -43.51 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.96 Total: 6.91 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.71 Total: 1.62 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.16 Total: -55.46 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.33 Total: -16.17 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.49 -10.02 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.534 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds