Wall clock time and date at job start Tue Mar 31 2020 11:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.51256 * 111.27690 * 2 1 4 4 O 1.46049 * 102.69816 * 72.44378 * 3 2 1 5 5 C 1.45720 * 108.92722 * 26.03652 * 4 3 2 6 6 C 1.49309 * 104.98630 * 6.58537 * 5 4 3 7 7 H 1.09006 * 108.55793 * 77.62905 * 6 5 4 8 8 C 1.49054 * 130.11709 * 212.37729 * 6 5 4 9 9 N 1.49421 * 104.61689 * 147.99252 * 8 6 5 10 10 C 1.34771 * 126.16603 * 173.05403 * 9 8 6 11 11 O 1.21574 * 120.00636 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99837 * 0.02562 * 10 9 8 13 13 C 1.39247 * 120.00128 * 174.84843 * 12 10 9 14 14 C 1.39677 * 119.57460 * 185.39654 * 13 12 10 15 15 C 1.38655 * 119.49422 * 179.72860 * 14 13 12 16 16 C 1.38351 * 118.66753 * 0.53194 * 15 14 13 17 17 C 1.40575 * 119.13361 * 359.73183 * 16 15 14 18 18 C 1.41333 * 119.78784 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.40030 * 119.99955 * 179.97438 * 18 17 16 21 21 N 1.30736 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99648 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47239 * 89.99989 * 22 20 18 24 24 H 1.48509 * 109.46604 * 209.99889 * 22 20 18 25 25 H 1.48494 * 109.47280 * 329.99471 * 22 20 18 26 26 N 1.31903 * 119.57371 * 5.66771 * 13 12 10 27 27 C 1.49758 * 107.67604 * 353.05723 * 9 8 6 28 28 H 1.09007 * 109.47028 * 61.01879 * 1 2 3 29 29 H 1.09002 * 109.47247 * 181.01746 * 1 2 3 30 30 H 1.08994 * 109.47365 * 301.01961 * 1 2 3 31 31 H 1.09005 * 110.76459 * 314.13835 * 3 2 1 32 32 H 1.09005 * 110.76664 * 190.74499 * 3 2 1 33 33 H 1.08997 * 110.35560 * 125.49620 * 5 4 3 34 34 H 1.09004 * 110.35502 * 247.68449 * 5 4 3 35 35 H 1.09003 * 110.36518 * 29.22002 * 8 6 5 36 36 H 1.08998 * 110.52097 * 266.84679 * 8 6 5 37 37 H 0.96998 * 119.99728 * 354.85260 * 12 10 9 38 38 H 1.08000 * 120.25602 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.66004 * 180.28463 * 15 14 13 40 40 H 1.07996 * 120.43204 * 179.74918 * 16 15 14 41 41 H 0.96999 * 120.00073 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.82914 * 215.84556 * 27 9 8 43 43 H 1.09004 * 110.99926 * 92.34961 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0789 1.4095 0.0000 4 8 1.7949 1.8646 1.3584 5 6 1.7256 0.7064 2.2401 6 6 2.1406 -0.4500 1.3918 7 1 3.2259 -0.4350 1.2917 8 6 1.7070 -1.8755 1.4326 9 7 1.7777 -2.3320 0.0116 10 6 1.6021 -3.5938 -0.4281 11 8 1.6843 -3.8409 -1.6156 12 7 1.3343 -4.5819 0.4487 13 6 1.0471 -5.8637 -0.0131 14 6 0.6604 -6.8528 0.8941 15 6 0.3692 -8.1272 0.4317 16 6 0.4826 -8.3836 -0.9231 17 6 0.8820 -7.3471 -1.7847 18 6 1.0018 -7.5937 -3.1713 19 1 0.7871 -8.5759 -3.5656 20 6 1.3988 -6.5643 -4.0336 21 7 1.6592 -5.3754 -3.5562 22 14 1.5564 -6.8900 -5.8662 23 1 0.2588 -6.6107 -6.5320 24 1 2.6059 -6.0079 -6.4372 25 1 1.9301 -8.3102 -6.0862 26 7 1.1488 -6.1296 -1.3011 27 6 2.0788 -1.1348 -0.8361 28 1 -0.3633 0.4980 -0.8990 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5295 0.8806 31 1 1.5577 2.0271 -0.7315 32 1 3.1522 1.4062 -0.1900 33 1 2.4112 0.8269 3.0788 34 1 0.7068 0.5653 2.6013 35 1 0.6857 -1.9509 1.8059 36 1 2.3826 -2.4627 2.0547 37 1 1.3417 -4.3999 1.4015 38 1 0.5848 -6.6257 1.9473 39 1 0.0640 -8.9050 1.1160 40 1 0.2668 -9.3670 -1.3136 41 1 1.9339 -4.6623 -4.1536 42 1 1.5604 -1.1971 -1.7929 43 1 3.1526 -1.0220 -0.9855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:17 Heat of formation + Delta-G solvation = 5.751017 kcal Electronic energy + Delta-G solvation = -27208.065089 eV Core-core repulsion = 23447.854408 eV Total energy + Delta-G solvation = -3760.210681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.39975 -40.82445 -39.34238 -37.21110 -35.90787 -34.86397 -33.15167 -32.20311 -31.90500 -30.77076 -28.32899 -27.83589 -27.44299 -26.47263 -23.70257 -23.01297 -21.72056 -20.70863 -20.45753 -19.71005 -18.45017 -18.09854 -17.61984 -16.87074 -16.52426 -16.44089 -16.25937 -15.88081 -15.67205 -15.59352 -15.24966 -14.81104 -14.62416 -14.17026 -13.83861 -13.67641 -13.66895 -13.29651 -13.19032 -12.95687 -12.83907 -12.72096 -12.71533 -12.55152 -12.31286 -12.16815 -11.76598 -11.68729 -11.52812 -11.22701 -10.87795 -10.83607 -10.52560 -9.89661 -9.55765 -9.11700 -8.78638 -8.02354 -6.41222 0.96318 1.28325 1.38961 1.51083 1.53462 1.54259 2.26609 2.47681 2.57162 2.80991 3.02861 3.05843 3.51665 3.81974 3.97057 4.02205 4.07401 4.22586 4.31207 4.36864 4.45289 4.53579 4.58634 4.68605 4.72436 4.75589 4.82255 4.84447 4.89381 4.94274 4.97008 5.01638 5.05836 5.07441 5.23325 5.27579 5.30906 5.67479 5.72794 5.84844 5.92955 6.03739 6.26694 6.40192 6.82485 7.05068 7.12803 7.95130 8.37781 8.58454 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.003928 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.682951 B = 7127.112613 C = 8538.198986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.081 3.919 4 O -0.400 6.400 5 C 0.082 3.918 6 C -0.143 4.143 7 H 0.087 0.913 8 C 0.127 3.873 9 N -0.647 5.647 10 C 0.679 3.321 11 O -0.514 6.514 12 N -0.659 5.659 13 C 0.364 3.636 14 C -0.345 4.345 15 C -0.032 4.032 16 C -0.330 4.330 17 C 0.238 3.762 18 C -0.467 4.467 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.687 5.687 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.255 1.255 26 N -0.508 5.508 27 C 0.157 3.843 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.414 0.586 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.268 0.732 42 H 0.058 0.942 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 14.177 11.201 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C 0.005 3.995 4 O -0.320 6.320 5 C 0.006 3.994 6 C -0.162 4.162 7 H 0.105 0.895 8 C 0.006 3.994 9 N -0.391 5.391 10 C 0.379 3.621 11 O -0.381 6.381 12 N -0.309 5.309 13 C 0.124 3.876 14 C -0.371 4.371 15 C -0.057 4.057 16 C -0.353 4.353 17 C 0.112 3.888 18 C -0.498 4.498 19 H 0.104 0.896 20 C -0.215 4.215 21 N -0.306 5.306 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.178 1.178 26 N -0.227 5.227 27 C 0.034 3.966 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.251 0.749 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.399 15.025 9.669 17.922 hybrid contribution -0.140 -1.187 0.020 1.196 sum 1.259 13.838 9.688 16.939 Atomic orbital electron populations 1.21636 0.92250 1.01497 1.03020 1.22564 0.97625 0.95291 0.96872 1.22656 1.00673 0.91581 0.84621 1.89373 1.93592 1.30667 1.18398 1.22023 1.02726 0.82527 0.92172 1.22284 1.02441 0.94795 0.96690 0.89478 1.20895 1.02385 0.93777 0.82333 1.49071 1.76685 1.04984 1.08361 1.16196 0.79988 0.80142 0.85795 1.91381 1.52647 1.79934 1.14181 1.42391 1.72614 1.06409 1.09493 1.18847 0.92874 0.84454 0.91400 1.20902 1.22521 0.94665 0.98982 1.21025 0.94273 0.95851 0.94511 1.21813 1.18426 1.00009 0.95098 1.18878 0.88591 0.86854 0.94479 1.19908 1.40565 0.98026 0.91288 0.89596 1.27047 0.94718 0.94738 1.05024 1.70558 1.23021 1.00621 1.36369 0.85347 0.78612 0.79487 0.77090 1.19124 1.19900 1.17839 1.68644 1.22485 1.21022 1.10540 1.21211 0.99774 0.82093 0.93493 0.91805 0.93987 0.90599 0.87981 0.90225 0.88219 0.90100 0.90522 0.89526 0.74853 0.85062 0.84361 0.87708 0.92101 0.92310 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.28 71.98 0.60 -1.97 16 2 C -0.12 -2.33 1.23 -51.35 -0.06 -2.39 16 3 C 0.08 1.29 6.97 71.41 0.50 1.79 16 4 O -0.40 -7.13 11.37 -148.98 -1.69 -8.83 16 5 C 0.08 1.10 6.96 70.80 0.49 1.59 16 6 C -0.14 -2.29 2.58 -11.26 -0.03 -2.31 16 7 H 0.09 1.39 7.94 -2.38 -0.02 1.37 16 8 C 0.13 2.51 5.49 84.56 0.46 2.97 16 9 N -0.65 -19.73 2.91 -833.99 -2.42 -22.16 16 10 C 0.68 29.08 8.49 179.05 1.52 30.60 16 11 O -0.51 -28.05 12.44 -3.95 -0.05 -28.09 16 12 N -0.66 -26.57 5.35 -322.13 -1.72 -28.29 16 13 C 0.36 18.09 7.43 133.26 0.99 19.08 16 14 C -0.35 -14.91 9.96 22.72 0.23 -14.69 16 15 C -0.03 -1.42 10.15 22.40 0.23 -1.20 16 16 C -0.33 -16.94 9.83 22.87 0.22 -16.72 16 17 C 0.24 14.01 6.55 40.19 0.26 14.27 16 18 C -0.47 -27.17 9.14 23.47 0.21 -26.96 16 19 H 0.09 4.67 7.85 -2.91 -0.02 4.65 16 20 C 0.01 0.57 5.50 85.29 0.47 1.04 16 21 N -0.69 -40.75 8.99 21.84 0.20 -40.56 16 22 Si 0.97 41.60 29.56 68.60 2.03 43.63 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 26 N -0.51 -29.95 5.74 -186.37 -1.07 -31.02 16 27 C 0.16 4.18 6.13 85.18 0.52 4.70 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.04 1.06 6.97 -2.39 -0.02 1.04 16 30 H 0.08 1.32 6.44 -2.39 -0.02 1.30 16 31 H 0.10 1.44 8.12 -2.38 -0.02 1.42 16 32 H 0.08 1.11 8.14 -2.38 -0.02 1.10 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.97 7.27 -2.39 -0.02 0.95 16 35 H 0.08 1.39 7.76 -2.39 -0.02 1.37 16 36 H 0.09 1.46 8.02 -2.39 -0.02 1.44 16 37 H 0.41 12.52 7.65 -92.71 -0.71 11.81 16 38 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 41 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 42 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -77.47 343.45 2.21 -75.26 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.33 Total: 30.26 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.61 Total: 9.80 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -5.02 Total: -122.02 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.74 Total: -36.92 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -77.47 2.21 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.009 kcal (2) G-P(sol) polarization free energy of solvation -77.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds