Wall clock time and date at job start Tue Mar 31 2020 11:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50574 * 110.05658 * 2 1 4 4 O 1.46139 * 102.45730 * 290.85212 * 3 2 1 5 5 C 1.45903 * 108.96662 * 334.69777 * 4 3 2 6 6 C 1.50039 * 104.93551 * 352.33371 * 5 4 3 7 7 H 1.08996 * 110.10639 * 279.99983 * 6 5 4 8 8 C 1.50620 * 126.89236 * 142.89860 * 6 5 4 9 9 N 1.49826 * 102.12167 * 206.01854 * 8 6 5 10 10 C 1.34777 * 126.15145 * 205.45272 * 9 8 6 11 11 O 1.21575 * 120.00145 * 179.97438 * 10 9 8 12 12 N 1.34782 * 119.99469 * 359.97088 * 10 9 8 13 13 C 1.39248 * 119.99532 * 174.83237 * 12 10 9 14 14 C 1.39679 * 119.57628 * 185.29955 * 13 12 10 15 15 C 1.38651 * 119.49761 * 179.97438 * 14 13 12 16 16 C 1.38350 * 118.66928 * 359.97438 * 15 14 13 17 17 C 1.40566 * 119.13325 * 0.02562 * 16 15 14 18 18 C 1.41336 * 119.78867 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99606 * 359.97438 * 18 17 16 20 20 C 1.40029 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.30740 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99831 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47462 * 60.00049 * 22 20 18 24 24 H 1.48500 * 109.47624 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47525 * 300.00028 * 22 20 18 26 26 N 1.31908 * 119.57878 * 5.02962 * 13 12 10 27 27 C 1.49352 * 107.70506 * 25.43209 * 9 8 6 28 28 H 1.08997 * 109.46797 * 166.66147 * 1 2 3 29 29 H 1.08999 * 109.46697 * 286.66218 * 1 2 3 30 30 H 1.08996 * 109.47181 * 46.66265 * 1 2 3 31 31 H 1.08999 * 110.81277 * 49.09237 * 3 2 1 32 32 H 1.09004 * 110.81121 * 172.61093 * 3 2 1 33 33 H 1.09007 * 110.19237 * 233.58292 * 5 4 3 34 34 H 1.09000 * 110.58438 * 111.28963 * 5 4 3 35 35 H 1.09003 * 110.87857 * 324.17763 * 8 6 5 36 36 H 1.09004 * 110.87111 * 87.85954 * 8 6 5 37 37 H 0.96996 * 120.00639 * 354.84127 * 12 10 9 38 38 H 1.08001 * 120.25533 * 0.02562 * 14 13 12 39 39 H 1.07996 * 120.66236 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.43386 * 180.02562 * 16 15 14 41 41 H 0.97002 * 120.00249 * 179.97438 * 21 20 18 42 42 H 1.09001 * 110.38908 * 248.88170 * 27 9 8 43 43 H 1.08991 * 110.39200 * 126.49438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0464 1.4144 0.0000 4 8 1.6774 1.8847 -1.3335 5 6 1.5676 0.7370 -2.2276 6 6 2.0721 -0.4269 -1.4265 7 1 3.1620 -0.4366 -1.4252 8 6 1.5417 -1.8365 -1.4470 9 7 1.9223 -2.3357 -0.0866 10 6 2.1254 -3.6222 0.2601 11 8 2.4328 -3.9027 1.4025 12 7 1.9877 -4.5978 -0.6596 13 6 2.3015 -5.9140 -0.3307 14 6 2.2625 -6.8997 -1.3195 15 6 2.5757 -8.2097 -0.9903 16 6 2.9203 -8.5012 0.3175 17 6 2.9412 -7.4648 1.2669 18 6 3.2907 -7.7471 2.6070 19 1 3.5401 -8.7566 2.8987 20 6 3.3135 -6.7179 3.5562 21 7 3.0111 -5.4960 3.2031 22 14 3.7747 -7.0912 5.3274 23 1 5.1489 -7.6523 5.3735 24 1 3.7231 -5.8406 6.1266 25 1 2.8182 -8.0776 5.8908 26 7 2.6369 -6.2129 0.9095 27 6 2.0367 -1.1515 0.8162 28 1 -0.3633 -0.9999 -0.2371 29 1 -0.3633 0.2947 0.9845 30 1 -0.3633 0.7053 -0.7474 31 1 1.5525 2.0070 0.7700 32 1 3.1284 1.4317 0.1310 33 1 2.1894 0.8868 -3.1103 34 1 0.5295 0.5752 -2.5179 35 1 0.4591 -1.8424 -1.5740 36 1 2.0283 -2.4232 -2.2262 37 1 1.6702 -4.3831 -1.5506 38 1 1.9912 -6.6435 -2.3330 39 1 2.5520 -8.9867 -1.7400 40 1 3.1699 -9.5117 0.6052 41 1 3.0265 -4.7832 3.8608 42 1 3.0768 -0.9883 1.0985 43 1 1.4186 -1.2891 1.7033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:20 Heat of formation + Delta-G solvation = 29.610210 kcal Electronic energy + Delta-G solvation = -27172.768578 eV Core-core repulsion = 23413.592510 eV Total energy + Delta-G solvation = -3759.176068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55932 -39.21501 -37.66712 -36.09015 -34.07890 -33.02115 -32.05760 -30.93572 -30.26672 -28.97704 -27.37673 -26.87798 -25.82544 -25.15478 -21.95102 -21.16733 -20.87383 -19.50766 -19.16675 -17.97879 -17.07702 -16.84221 -16.05983 -15.84090 -15.67925 -15.02610 -14.68631 -14.50826 -14.42451 -13.93451 -13.68398 -13.61033 -12.92713 -12.80593 -12.78004 -12.39672 -12.33528 -12.21035 -11.93512 -11.83322 -11.73980 -11.28672 -11.11229 -10.94844 -10.83632 -10.64427 -10.44512 -10.36406 -9.92933 -9.86555 -9.68697 -9.12321 -9.00744 -8.24470 -7.93759 -7.20534 -6.93577 -6.09316 -4.37509 2.84855 2.88654 3.14409 3.18160 3.20013 3.29424 3.39429 3.54112 4.08729 4.12771 4.35279 4.45531 4.64339 4.82324 4.90383 4.96688 4.99605 5.10104 5.25236 5.30064 5.38830 5.51714 5.55283 5.57367 5.78454 5.84118 5.86356 5.90734 6.06307 6.08829 6.10569 6.24293 6.42028 6.50801 6.72987 6.81741 6.86605 7.23328 7.38856 7.63107 7.74255 7.82903 8.17526 8.28604 8.62671 8.80273 9.07718 9.55870 10.28349 10.51799 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.003880 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.827676 B = 7215.522577 C = 8637.493157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.082 3.918 4 O -0.387 6.387 5 C 0.074 3.926 6 C -0.155 4.155 7 H 0.092 0.908 8 C 0.123 3.877 9 N -0.651 5.651 10 C 0.685 3.315 11 O -0.456 6.456 12 N -0.670 5.670 13 C 0.386 3.614 14 C -0.358 4.358 15 C -0.035 4.035 16 C -0.307 4.307 17 C 0.272 3.728 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.650 5.650 22 Si 0.895 3.105 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.267 1.267 26 N -0.472 5.472 27 C 0.165 3.835 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.394 0.606 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.272 0.728 42 H 0.065 0.935 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 13.573 -8.082 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C 0.005 3.995 4 O -0.307 6.307 5 C -0.002 4.002 6 C -0.174 4.174 7 H 0.110 0.890 8 C 0.000 4.000 9 N -0.397 5.397 10 C 0.385 3.615 11 O -0.319 6.319 12 N -0.319 5.319 13 C 0.147 3.853 14 C -0.384 4.384 15 C -0.059 4.059 16 C -0.330 4.330 17 C 0.147 3.853 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.268 5.268 22 Si 0.720 3.280 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.192 1.192 26 N -0.191 5.191 27 C 0.042 3.958 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.227 0.773 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.553 14.354 -6.418 16.120 hybrid contribution 0.058 -0.931 -0.487 1.052 sum -3.495 13.423 -6.904 15.494 Atomic orbital electron populations 1.22002 0.92581 1.02818 1.02678 1.22261 0.98073 0.95559 0.97217 1.22406 0.99671 0.92101 0.85317 1.89413 1.91415 1.30243 1.19624 1.22164 1.01214 0.84361 0.92475 1.22916 1.02348 0.95681 0.96500 0.88969 1.21370 0.99699 0.92465 0.86454 1.49189 1.76518 1.04593 1.09430 1.15961 0.80772 0.78708 0.86021 1.91402 1.46771 1.78263 1.15456 1.42563 1.69357 1.05539 1.14415 1.18339 0.93301 0.81945 0.91734 1.20417 1.26193 0.94138 0.97682 1.20538 0.95542 0.94456 0.95402 1.21619 1.17496 0.99387 0.94494 1.18373 0.88185 0.85748 0.93021 1.19549 1.38738 0.95465 0.91845 0.90013 1.26185 0.95593 0.95239 1.00244 1.70327 1.23739 0.99174 1.33599 0.86600 0.79917 0.78604 0.82928 1.19200 1.20440 1.19201 1.68681 1.18482 1.19700 1.12225 1.20587 1.01023 0.82008 0.92204 0.91477 0.91866 0.91673 0.88932 0.91259 0.90234 0.90863 0.91000 0.90696 0.77275 0.89214 0.88614 0.88578 0.91583 0.91632 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.83 37.16 0.29 -1.07 16 2 C -0.13 -1.30 1.36 -154.21 -0.21 -1.51 16 3 C 0.08 0.74 7.04 35.94 0.25 0.99 16 4 O -0.39 -4.00 11.13 -35.23 -0.39 -4.39 16 5 C 0.07 0.62 6.90 35.69 0.25 0.87 16 6 C -0.16 -1.47 2.81 -90.27 -0.25 -1.73 16 7 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.12 1.33 5.93 -3.38 -0.02 1.31 16 9 N -0.65 -10.02 3.36 -177.44 -0.60 -10.62 16 10 C 0.69 14.40 8.48 -86.91 -0.74 13.67 16 11 O -0.46 -11.86 12.47 5.30 0.07 -11.80 16 12 N -0.67 -13.63 5.35 -15.78 -0.08 -13.71 16 13 C 0.39 9.59 7.43 -154.99 -1.15 8.44 16 14 C -0.36 -8.13 9.95 -38.89 -0.39 -8.51 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.31 -7.81 9.83 -38.66 -0.38 -8.19 16 17 C 0.27 7.74 6.55 -85.00 -0.56 7.18 16 18 C -0.43 -11.86 9.14 -37.73 -0.34 -12.20 16 19 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 20 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 21 N -0.65 -18.33 8.98 55.55 0.50 -17.83 16 22 Si 0.90 19.48 29.56 -169.99 -5.02 14.46 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 N -0.47 -13.48 5.74 -10.26 -0.06 -13.54 16 27 C 0.16 2.20 6.19 -3.97 -0.02 2.18 16 28 H 0.07 0.70 6.04 -51.93 -0.31 0.39 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.57 6.15 -51.93 -0.32 0.25 16 31 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.07 0.54 7.18 -51.93 -0.37 0.17 16 35 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 36 H 0.07 0.75 7.46 -51.93 -0.39 0.36 16 37 H 0.39 6.29 7.31 -40.82 -0.30 6.00 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -33.63 340.60 -10.01 -43.64 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.79 Total: 7.01 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.77 Total: 1.64 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.24 Total: -55.70 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.33 Total: -16.19 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.63 -10.01 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.255 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds