Wall clock time and date at job start Tue Mar 31 2020 11:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50574 * 110.05658 * 2 1 4 4 O 1.46139 * 102.45730 * 290.85212 * 3 2 1 5 5 C 1.45903 * 108.96662 * 334.69777 * 4 3 2 6 6 C 1.50039 * 104.93551 * 352.33371 * 5 4 3 7 7 H 1.08996 * 110.10639 * 279.99983 * 6 5 4 8 8 C 1.50620 * 126.89236 * 142.89860 * 6 5 4 9 9 N 1.49826 * 102.12167 * 206.01854 * 8 6 5 10 10 C 1.34777 * 126.15145 * 205.45272 * 9 8 6 11 11 O 1.21575 * 120.00145 * 179.97438 * 10 9 8 12 12 N 1.34782 * 119.99469 * 359.97088 * 10 9 8 13 13 C 1.39248 * 119.99532 * 174.83237 * 12 10 9 14 14 C 1.39679 * 119.57628 * 185.29955 * 13 12 10 15 15 C 1.38651 * 119.49761 * 179.97438 * 14 13 12 16 16 C 1.38350 * 118.66928 * 359.97438 * 15 14 13 17 17 C 1.40566 * 119.13325 * 0.02562 * 16 15 14 18 18 C 1.41336 * 119.78867 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99606 * 359.97438 * 18 17 16 20 20 C 1.40029 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.30740 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99831 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47462 * 60.00049 * 22 20 18 24 24 H 1.48500 * 109.47624 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47525 * 300.00028 * 22 20 18 26 26 N 1.31908 * 119.57878 * 5.02962 * 13 12 10 27 27 C 1.49352 * 107.70506 * 25.43209 * 9 8 6 28 28 H 1.08997 * 109.46797 * 166.66147 * 1 2 3 29 29 H 1.08999 * 109.46697 * 286.66218 * 1 2 3 30 30 H 1.08996 * 109.47181 * 46.66265 * 1 2 3 31 31 H 1.08999 * 110.81277 * 49.09237 * 3 2 1 32 32 H 1.09004 * 110.81121 * 172.61093 * 3 2 1 33 33 H 1.09007 * 110.19237 * 233.58292 * 5 4 3 34 34 H 1.09000 * 110.58438 * 111.28963 * 5 4 3 35 35 H 1.09003 * 110.87857 * 324.17763 * 8 6 5 36 36 H 1.09004 * 110.87111 * 87.85954 * 8 6 5 37 37 H 0.96996 * 120.00639 * 354.84127 * 12 10 9 38 38 H 1.08001 * 120.25533 * 0.02562 * 14 13 12 39 39 H 1.07996 * 120.66236 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.43386 * 180.02562 * 16 15 14 41 41 H 0.97002 * 120.00249 * 179.97438 * 21 20 18 42 42 H 1.09001 * 110.38908 * 248.88170 * 27 9 8 43 43 H 1.08991 * 110.39200 * 126.49438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0464 1.4144 0.0000 4 8 1.6774 1.8847 -1.3335 5 6 1.5676 0.7370 -2.2276 6 6 2.0721 -0.4269 -1.4265 7 1 3.1620 -0.4366 -1.4252 8 6 1.5417 -1.8365 -1.4470 9 7 1.9223 -2.3357 -0.0866 10 6 2.1254 -3.6222 0.2601 11 8 2.4328 -3.9027 1.4025 12 7 1.9877 -4.5978 -0.6596 13 6 2.3015 -5.9140 -0.3307 14 6 2.2625 -6.8997 -1.3195 15 6 2.5757 -8.2097 -0.9903 16 6 2.9203 -8.5012 0.3175 17 6 2.9412 -7.4648 1.2669 18 6 3.2907 -7.7471 2.6070 19 1 3.5401 -8.7566 2.8987 20 6 3.3135 -6.7179 3.5562 21 7 3.0111 -5.4960 3.2031 22 14 3.7747 -7.0912 5.3274 23 1 5.1489 -7.6523 5.3735 24 1 3.7231 -5.8406 6.1266 25 1 2.8182 -8.0776 5.8908 26 7 2.6369 -6.2129 0.9095 27 6 2.0367 -1.1515 0.8162 28 1 -0.3633 -0.9999 -0.2371 29 1 -0.3633 0.2947 0.9845 30 1 -0.3633 0.7053 -0.7474 31 1 1.5525 2.0070 0.7700 32 1 3.1284 1.4317 0.1310 33 1 2.1894 0.8868 -3.1103 34 1 0.5295 0.5752 -2.5179 35 1 0.4591 -1.8424 -1.5740 36 1 2.0283 -2.4232 -2.2262 37 1 1.6702 -4.3831 -1.5506 38 1 1.9912 -6.6435 -2.3330 39 1 2.5520 -8.9867 -1.7400 40 1 3.1699 -9.5117 0.6052 41 1 3.0265 -4.7832 3.8608 42 1 3.0768 -0.9883 1.0985 43 1 1.4186 -1.2891 1.7033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:19 Heat of formation + Delta-G solvation = 7.911484 kcal Electronic energy + Delta-G solvation = -27173.709506 eV Core-core repulsion = 23413.592510 eV Total energy + Delta-G solvation = -3760.116996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.48642 -40.84325 -39.34910 -37.21590 -35.91308 -34.86757 -33.17961 -32.19744 -31.82451 -30.78131 -28.22728 -27.84400 -27.44290 -26.51577 -23.70826 -23.02066 -21.78428 -20.72067 -20.39332 -19.71967 -18.44930 -18.08628 -17.64687 -16.82497 -16.51384 -16.48362 -16.26546 -15.99754 -15.77111 -15.54308 -15.21282 -14.86043 -14.63053 -14.13464 -13.87364 -13.67219 -13.61834 -13.22147 -13.14336 -12.99046 -12.83266 -12.73040 -12.65355 -12.56594 -12.30902 -12.16974 -11.78811 -11.65330 -11.51717 -11.20989 -10.87515 -10.83778 -10.56150 -9.89759 -9.57805 -9.11619 -8.78869 -8.02229 -6.41371 0.96716 1.28503 1.38832 1.50620 1.52287 1.53740 2.26623 2.47873 2.58880 2.79120 3.01859 3.03568 3.56841 3.78152 4.01371 4.04902 4.07974 4.16355 4.29043 4.34507 4.45247 4.50088 4.57964 4.66432 4.72136 4.78913 4.81976 4.85070 4.90459 4.93413 4.97013 5.03343 5.05897 5.07548 5.24639 5.28436 5.32257 5.67181 5.70917 5.84562 5.92806 6.02854 6.26158 6.39903 6.82409 7.04683 7.12246 7.94595 8.37688 8.58389 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.003880 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.827676 B = 7215.522577 C = 8637.493157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.084 3.916 4 O -0.400 6.400 5 C 0.077 3.923 6 C -0.143 4.143 7 H 0.084 0.916 8 C 0.121 3.879 9 N -0.648 5.648 10 C 0.678 3.322 11 O -0.514 6.514 12 N -0.658 5.658 13 C 0.364 3.636 14 C -0.345 4.345 15 C -0.032 4.032 16 C -0.331 4.331 17 C 0.238 3.762 18 C -0.468 4.468 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.687 5.687 22 Si 0.974 3.026 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.259 1.259 26 N -0.508 5.508 27 C 0.163 3.837 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.415 0.585 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.268 0.732 42 H 0.055 0.945 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 14.499 -10.182 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C 0.008 3.992 4 O -0.320 6.320 5 C 0.001 3.999 6 C -0.163 4.163 7 H 0.102 0.898 8 C 0.000 4.000 9 N -0.392 5.392 10 C 0.378 3.622 11 O -0.381 6.381 12 N -0.309 5.309 13 C 0.124 3.876 14 C -0.370 4.370 15 C -0.057 4.057 16 C -0.354 4.354 17 C 0.112 3.888 18 C -0.499 4.499 19 H 0.104 0.896 20 C -0.215 4.215 21 N -0.306 5.306 22 Si 0.795 3.205 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.184 1.184 26 N -0.227 5.227 27 C 0.040 3.960 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.252 0.748 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.232 15.330 -8.609 18.084 hybrid contribution 0.214 -1.178 -0.052 1.199 sum -4.018 14.152 -8.661 17.071 Atomic orbital electron populations 1.21952 0.91796 1.02530 1.03237 1.22127 0.98503 0.95147 0.96649 1.22455 1.00034 0.91242 0.85466 1.89409 1.91565 1.31053 1.20003 1.22285 1.02479 0.82821 0.92281 1.22827 1.01835 0.95247 0.96345 0.89770 1.21627 1.01073 0.93299 0.84002 1.49073 1.75009 1.03168 1.11927 1.16201 0.80406 0.80172 0.85432 1.91383 1.49197 1.79792 1.17764 1.42388 1.68980 1.04171 1.15355 1.18851 0.93180 0.84055 0.91513 1.20901 1.23579 0.93533 0.99029 1.21025 0.93662 0.95759 0.95206 1.21812 1.18724 0.99287 0.95537 1.18869 0.88900 0.86803 0.94205 1.19890 1.40976 0.96187 0.92823 0.89566 1.27048 0.95052 0.94749 1.04674 1.70553 1.25322 0.99971 1.34753 0.85408 0.79769 0.78454 0.76914 1.18436 1.19989 1.18381 1.68645 1.19535 1.20113 1.14441 1.20622 1.00351 0.82791 0.92192 0.92503 0.91798 0.90258 0.87634 0.90988 0.88652 0.89302 0.89115 0.89309 0.74803 0.85011 0.84340 0.87699 0.92093 0.92661 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.83 71.98 0.56 -1.79 16 2 C -0.12 -2.29 1.36 -51.99 -0.07 -2.36 16 3 C 0.08 1.37 7.04 71.20 0.50 1.87 16 4 O -0.40 -7.14 11.13 -148.98 -1.66 -8.79 16 5 C 0.08 1.04 6.90 71.03 0.49 1.53 16 6 C -0.14 -2.39 2.81 -10.57 -0.03 -2.42 16 7 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 8 C 0.12 2.36 5.93 84.96 0.50 2.86 16 9 N -0.65 -19.87 3.36 -833.55 -2.80 -22.67 16 10 C 0.68 29.13 8.48 179.05 1.52 30.65 16 11 O -0.51 -28.17 12.47 -3.95 -0.05 -28.22 16 12 N -0.66 -26.50 5.35 -322.12 -1.72 -28.22 16 13 C 0.36 18.06 7.43 133.26 0.99 19.05 16 14 C -0.34 -14.86 9.95 22.72 0.23 -14.63 16 15 C -0.03 -1.42 10.15 22.40 0.23 -1.19 16 16 C -0.33 -16.94 9.83 22.86 0.22 -16.71 16 17 C 0.24 14.03 6.55 40.19 0.26 14.29 16 18 C -0.47 -27.24 9.14 23.47 0.21 -27.03 16 19 H 0.09 4.68 7.85 -2.91 -0.02 4.65 16 20 C 0.01 0.58 5.50 85.29 0.47 1.05 16 21 N -0.69 -40.87 8.98 21.84 0.20 -40.67 16 22 Si 0.97 41.63 29.56 68.60 2.03 43.66 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 N -0.51 -30.00 5.74 -186.37 -1.07 -31.07 16 27 C 0.16 4.44 6.19 84.85 0.52 4.96 16 28 H 0.06 1.09 6.04 -2.39 -0.01 1.07 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.15 6.15 -2.39 -0.01 1.14 16 31 H 0.11 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.09 0.96 7.18 -2.39 -0.02 0.94 16 35 H 0.09 1.50 6.35 -2.39 -0.02 1.49 16 36 H 0.09 1.52 7.46 -2.38 -0.02 1.50 16 37 H 0.41 12.42 7.31 -92.71 -0.68 11.74 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 41 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.79 7.98 -2.39 -0.02 1.77 16 Total: -1.00 -77.66 340.60 1.91 -75.75 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.37 Total: 30.11 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.62 Total: 10.12 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -5.39 Total: -122.63 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.71 Total: -37.01 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -77.66 1.91 -75.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.664 kcal (2) G-P(sol) polarization free energy of solvation -77.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds