Wall clock time and date at job start Tue Mar 31 2020 11:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.54373 * 112.78627 * 2 1 4 4 O 1.45629 * 104.33291 * 99.62019 * 3 2 1 5 5 C 1.44369 * 105.67938 * 40.10072 * 4 3 2 6 6 C 1.54374 * 104.94568 * 319.50548 * 5 4 3 7 7 H 1.09003 * 112.78410 * 261.50356 * 6 5 4 8 8 C 1.54411 * 108.71174 * 134.96021 * 6 5 4 9 9 N 1.48419 * 104.46220 * 224.43307 * 8 6 5 10 10 C 1.34785 * 128.25444 * 221.85571 * 9 8 6 11 11 O 1.21576 * 119.99799 * 179.87003 * 10 9 8 12 12 N 1.34773 * 119.99812 * 359.86676 * 10 9 8 13 13 C 1.39251 * 119.99867 * 174.83138 * 12 10 9 14 14 C 1.39676 * 119.57601 * 185.29095 * 13 12 10 15 15 C 1.38651 * 119.49552 * 180.02562 * 14 13 12 16 16 C 1.38351 * 118.66732 * 359.97438 * 15 14 13 17 17 C 1.40570 * 119.13813 * 0.02562 * 16 15 14 18 18 C 1.41329 * 119.79153 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00195 * 359.97438 * 18 17 16 20 20 C 1.40027 * 119.99836 * 180.02562 * 18 17 16 21 21 N 1.30743 * 120.00182 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47332 * 59.99105 * 22 20 18 24 24 H 1.48498 * 109.47232 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46989 * 299.99215 * 22 20 18 26 26 N 1.31910 * 119.57284 * 5.02193 * 13 12 10 27 27 C 1.48312 * 103.53836 * 41.74739 * 9 8 6 28 28 H 1.08997 * 109.47092 * 182.60160 * 1 2 3 29 29 H 1.08997 * 109.47500 * 302.59776 * 1 2 3 30 30 H 1.08996 * 109.46757 * 62.60154 * 1 2 3 31 31 H 1.08998 * 110.34813 * 218.06123 * 3 2 1 32 32 H 1.08992 * 110.34948 * 340.33485 * 3 2 1 33 33 H 1.09001 * 110.34771 * 200.63469 * 5 4 3 34 34 H 1.09008 * 110.43520 * 78.41374 * 5 4 3 35 35 H 1.08997 * 110.45392 * 343.07436 * 8 6 5 36 36 H 1.09003 * 110.45033 * 105.49552 * 8 6 5 37 37 H 0.96999 * 120.00378 * 354.83440 * 12 10 9 38 38 H 1.07998 * 120.25845 * 359.97438 * 14 13 12 39 39 H 1.08002 * 120.66431 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.43479 * 179.97438 * 16 15 14 41 41 H 0.97003 * 119.99739 * 179.97438 * 21 20 18 42 42 H 1.09009 * 110.44966 * 199.45918 * 27 9 8 43 43 H 1.09002 * 110.45402 * 77.03901 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1279 1.4233 0.0000 4 8 2.4849 1.6643 1.3911 5 6 3.0360 0.4203 1.8737 6 6 2.1370 -0.6766 1.2639 7 1 1.3784 -1.0356 1.9595 8 6 3.0364 -1.8012 0.7067 9 7 2.4521 -2.1202 -0.6198 10 6 2.2596 -3.3322 -1.1773 11 8 1.7613 -3.4205 -2.2827 12 7 2.6195 -4.4460 -0.5093 13 6 2.3234 -5.7003 -1.0365 14 6 2.6001 -6.8460 -0.2871 15 6 2.3051 -8.0942 -0.8139 16 6 1.7410 -8.1658 -2.0752 17 6 1.4864 -6.9762 -2.7796 18 6 0.9100 -7.0333 -4.0688 19 1 0.6670 -7.9886 -4.5098 20 6 0.6551 -5.8511 -4.7746 21 7 0.9499 -4.6945 -4.2408 22 14 -0.1074 -5.9263 -6.4782 23 1 -1.4336 -6.5896 -6.3982 24 1 -0.2744 -4.5488 -7.0072 25 1 0.7793 -6.7005 -7.3836 26 7 1.7803 -5.7910 -2.2352 27 6 2.1276 -0.7882 -1.1856 28 1 -0.3633 -1.0266 0.0466 29 1 -0.3634 0.5536 0.8657 30 1 -0.3633 0.4729 -0.9124 31 1 3.0165 1.4611 -0.6300 32 1 1.3875 2.1454 -0.3439 33 1 2.9931 0.3837 2.9623 34 1 4.0641 0.3012 1.5314 35 1 4.0616 -1.4486 0.5943 36 1 3.0040 -2.6735 1.3597 37 1 3.0848 -4.3739 0.3388 38 1 3.0412 -6.7605 0.6950 39 1 2.5115 -8.9925 -0.2510 40 1 1.5001 -9.1231 -2.5132 41 1 0.7736 -3.8756 -4.7300 42 1 1.3954 -0.8832 -1.9876 43 1 3.0306 -0.2995 -1.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:23 Heat of formation + Delta-G solvation = 5.565907 kcal Electronic energy + Delta-G solvation = -27162.441575 eV Core-core repulsion = 23402.222867 eV Total energy + Delta-G solvation = -3760.218708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82141 -39.13688 -37.62261 -35.90949 -34.08160 -33.06642 -32.48203 -30.98411 -30.27064 -29.00314 -27.00870 -26.27450 -25.55353 -24.69623 -22.21458 -21.74346 -21.14098 -19.36686 -19.14143 -18.04348 -16.97048 -16.42688 -16.10492 -15.96698 -15.48749 -14.74142 -14.70295 -14.45048 -14.15508 -13.89268 -13.65318 -13.49792 -13.23946 -13.04247 -12.81689 -12.53101 -12.25563 -11.96920 -11.90045 -11.64756 -11.19205 -11.12273 -10.97916 -10.95319 -10.91957 -10.80426 -10.64627 -10.44235 -9.96871 -9.93087 -9.69588 -9.12682 -9.01199 -8.25836 -7.94035 -7.20986 -6.93937 -6.09667 -4.37785 2.85650 3.00708 3.14124 3.17868 3.19776 3.29193 3.67567 4.04927 4.08460 4.10384 4.38582 4.57687 4.66445 4.80230 4.85471 4.96669 4.99181 5.01422 5.33531 5.43677 5.48664 5.50350 5.55026 5.67959 5.80583 5.83369 5.91464 5.96704 6.05779 6.08994 6.16406 6.31864 6.50507 6.51930 6.74218 6.81849 6.86313 7.23850 7.41931 7.63049 7.76309 7.82646 8.17764 8.28976 8.64249 8.80062 9.07430 9.55965 10.27968 10.51427 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.004029 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.162753 B = 6948.154485 C = 8387.975195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.056 3.944 4 O -0.379 6.379 5 C 0.052 3.948 6 C -0.128 4.128 7 H 0.100 0.900 8 C 0.107 3.893 9 N -0.649 5.649 10 C 0.689 3.311 11 O -0.456 6.456 12 N -0.670 5.670 13 C 0.387 3.613 14 C -0.358 4.358 15 C -0.035 4.035 16 C -0.307 4.307 17 C 0.272 3.728 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.650 5.650 22 Si 0.895 3.105 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.267 1.267 26 N -0.472 5.472 27 C 0.137 3.863 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.394 0.606 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.272 0.728 42 H 0.087 0.913 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 11.915 9.916 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.107 4.107 3 C -0.021 4.021 4 O -0.297 6.297 5 C -0.025 4.025 6 C -0.148 4.148 7 H 0.119 0.881 8 C -0.018 4.018 9 N -0.392 5.392 10 C 0.390 3.610 11 O -0.319 6.319 12 N -0.319 5.319 13 C 0.147 3.853 14 C -0.384 4.384 15 C -0.059 4.059 16 C -0.330 4.330 17 C 0.147 3.853 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.268 5.268 22 Si 0.719 3.281 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.192 1.192 26 N -0.191 5.191 27 C 0.013 3.987 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.227 0.773 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.454 12.932 8.520 15.679 hybrid contribution 0.244 -0.981 0.301 1.055 sum 2.697 11.950 8.821 15.096 Atomic orbital electron populations 1.21601 0.92064 1.02675 1.01917 1.22909 0.97176 0.95035 0.95568 1.23793 0.99230 0.95367 0.83678 1.89259 1.82176 1.32714 1.25574 1.23514 0.96220 0.82958 0.99787 1.23614 0.98121 0.96172 0.96851 0.88138 1.22415 0.96123 0.97471 0.85763 1.48501 1.67781 1.04490 1.18477 1.15900 0.81323 0.78726 0.85050 1.91399 1.42986 1.82312 1.15228 1.42549 1.61182 1.03704 1.24450 1.18336 0.93364 0.81965 0.91644 1.20414 1.23463 0.92388 1.02153 1.20539 0.95476 0.95185 0.94733 1.21621 1.15053 0.98470 0.97834 1.18373 0.88823 0.85540 0.92591 1.19546 1.33845 0.93672 0.98519 0.90011 1.26187 0.96116 0.95719 0.99234 1.70332 1.25512 0.97461 1.33536 0.86600 0.80354 0.78074 0.83028 1.19200 1.20438 1.19193 1.68682 1.17270 1.25841 1.07279 1.22203 0.99588 0.81612 0.95297 0.91824 0.92230 0.92026 0.91578 0.88713 0.89035 0.91857 0.91301 0.90801 0.77285 0.89221 0.88609 0.88574 0.91600 0.89436 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.75 37.16 0.33 -1.03 16 2 C -0.11 -1.12 1.09 -151.62 -0.16 -1.28 16 3 C 0.06 0.53 6.93 37.88 0.26 0.79 16 4 O -0.38 -4.08 11.67 -35.23 -0.41 -4.49 16 5 C 0.05 0.45 7.19 37.88 0.27 0.72 16 6 C -0.13 -1.25 3.87 -87.73 -0.34 -1.59 16 7 H 0.10 0.98 7.98 -51.93 -0.41 0.56 16 8 C 0.11 1.16 6.45 -2.24 -0.01 1.15 16 9 N -0.65 -10.08 3.32 -174.63 -0.58 -10.66 16 10 C 0.69 14.55 8.54 -86.91 -0.74 13.81 16 11 O -0.46 -11.87 12.38 5.30 0.07 -11.81 16 12 N -0.67 -13.70 5.36 -15.78 -0.08 -13.78 16 13 C 0.39 9.61 7.43 -154.99 -1.15 8.46 16 14 C -0.36 -8.14 9.95 -38.89 -0.39 -8.52 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.31 -7.80 9.83 -38.66 -0.38 -8.18 16 17 C 0.27 7.73 6.55 -85.00 -0.56 7.18 16 18 C -0.43 -11.84 9.14 -37.74 -0.34 -12.19 16 19 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 20 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 21 N -0.65 -18.30 8.98 55.55 0.50 -17.80 16 22 Si 0.90 19.46 29.56 -169.99 -5.02 14.43 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 N -0.47 -13.47 5.73 -10.26 -0.06 -13.53 16 27 C 0.14 1.82 6.22 -2.31 -0.01 1.80 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.57 7.14 -51.93 -0.37 0.20 16 32 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.49 7.14 -51.92 -0.37 0.12 16 35 H 0.07 0.66 7.14 -51.93 -0.37 0.28 16 36 H 0.07 0.74 6.92 -51.93 -0.36 0.38 16 37 H 0.39 6.34 7.16 -40.82 -0.29 6.05 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 41 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 42 H 0.09 1.34 7.66 -51.92 -0.40 0.95 16 43 H 0.07 0.78 7.15 -51.93 -0.37 0.40 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -33.82 344.99 -9.99 -43.81 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.86 Total: 7.29 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.73 Total: 1.33 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.22 Total: -55.77 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.35 Total: -16.29 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.82 -9.99 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.376 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds