Wall clock time and date at job start Tue Mar 31 2020 11:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.54373 * 112.78627 * 2 1 4 4 O 1.45629 * 104.33291 * 99.62019 * 3 2 1 5 5 C 1.44369 * 105.67938 * 40.10072 * 4 3 2 6 6 C 1.54374 * 104.94568 * 319.50548 * 5 4 3 7 7 H 1.09003 * 112.78410 * 261.50356 * 6 5 4 8 8 C 1.54411 * 108.71174 * 134.96021 * 6 5 4 9 9 N 1.48419 * 104.46220 * 224.43307 * 8 6 5 10 10 C 1.34785 * 128.25444 * 221.85571 * 9 8 6 11 11 O 1.21576 * 119.99799 * 179.87003 * 10 9 8 12 12 N 1.34773 * 119.99812 * 359.86676 * 10 9 8 13 13 C 1.39251 * 119.99867 * 174.83138 * 12 10 9 14 14 C 1.39676 * 119.57601 * 185.29095 * 13 12 10 15 15 C 1.38651 * 119.49552 * 180.02562 * 14 13 12 16 16 C 1.38351 * 118.66732 * 359.97438 * 15 14 13 17 17 C 1.40570 * 119.13813 * 0.02562 * 16 15 14 18 18 C 1.41329 * 119.79153 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00195 * 359.97438 * 18 17 16 20 20 C 1.40027 * 119.99836 * 180.02562 * 18 17 16 21 21 N 1.30743 * 120.00182 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47332 * 59.99105 * 22 20 18 24 24 H 1.48498 * 109.47232 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46989 * 299.99215 * 22 20 18 26 26 N 1.31910 * 119.57284 * 5.02193 * 13 12 10 27 27 C 1.48312 * 103.53836 * 41.74739 * 9 8 6 28 28 H 1.08997 * 109.47092 * 182.60160 * 1 2 3 29 29 H 1.08997 * 109.47500 * 302.59776 * 1 2 3 30 30 H 1.08996 * 109.46757 * 62.60154 * 1 2 3 31 31 H 1.08998 * 110.34813 * 218.06123 * 3 2 1 32 32 H 1.08992 * 110.34948 * 340.33485 * 3 2 1 33 33 H 1.09001 * 110.34771 * 200.63469 * 5 4 3 34 34 H 1.09008 * 110.43520 * 78.41374 * 5 4 3 35 35 H 1.08997 * 110.45392 * 343.07436 * 8 6 5 36 36 H 1.09003 * 110.45033 * 105.49552 * 8 6 5 37 37 H 0.96999 * 120.00378 * 354.83440 * 12 10 9 38 38 H 1.07998 * 120.25845 * 359.97438 * 14 13 12 39 39 H 1.08002 * 120.66431 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.43479 * 179.97438 * 16 15 14 41 41 H 0.97003 * 119.99739 * 179.97438 * 21 20 18 42 42 H 1.09009 * 110.44966 * 199.45918 * 27 9 8 43 43 H 1.09002 * 110.45402 * 77.03901 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1279 1.4233 0.0000 4 8 2.4849 1.6643 1.3911 5 6 3.0360 0.4203 1.8737 6 6 2.1370 -0.6766 1.2639 7 1 1.3784 -1.0356 1.9595 8 6 3.0364 -1.8012 0.7067 9 7 2.4521 -2.1202 -0.6198 10 6 2.2596 -3.3322 -1.1773 11 8 1.7613 -3.4205 -2.2827 12 7 2.6195 -4.4460 -0.5093 13 6 2.3234 -5.7003 -1.0365 14 6 2.6001 -6.8460 -0.2871 15 6 2.3051 -8.0942 -0.8139 16 6 1.7410 -8.1658 -2.0752 17 6 1.4864 -6.9762 -2.7796 18 6 0.9100 -7.0333 -4.0688 19 1 0.6670 -7.9886 -4.5098 20 6 0.6551 -5.8511 -4.7746 21 7 0.9499 -4.6945 -4.2408 22 14 -0.1074 -5.9263 -6.4782 23 1 -1.4336 -6.5896 -6.3982 24 1 -0.2744 -4.5488 -7.0072 25 1 0.7793 -6.7005 -7.3836 26 7 1.7803 -5.7910 -2.2352 27 6 2.1276 -0.7882 -1.1856 28 1 -0.3633 -1.0266 0.0466 29 1 -0.3634 0.5536 0.8657 30 1 -0.3633 0.4729 -0.9124 31 1 3.0165 1.4611 -0.6300 32 1 1.3875 2.1454 -0.3439 33 1 2.9931 0.3837 2.9623 34 1 4.0641 0.3012 1.5314 35 1 4.0616 -1.4486 0.5943 36 1 3.0040 -2.6735 1.3597 37 1 3.0848 -4.3739 0.3388 38 1 3.0412 -6.7605 0.6950 39 1 2.5115 -8.9925 -0.2510 40 1 1.5001 -9.1231 -2.5132 41 1 0.7736 -3.8756 -4.7300 42 1 1.3954 -0.8832 -1.9876 43 1 3.0306 -0.2995 -1.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:22 Heat of formation + Delta-G solvation = -16.254151 kcal Electronic energy + Delta-G solvation = -27163.387763 eV Core-core repulsion = 23402.222867 eV Total energy + Delta-G solvation = -3761.164896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84221 -40.70276 -39.29334 -37.03279 -35.91049 -34.87710 -33.57905 -32.22346 -31.90813 -30.81687 -28.06296 -27.47178 -27.05090 -25.88094 -23.63089 -23.00659 -22.89227 -20.73268 -20.27891 -19.73989 -18.54050 -17.86974 -17.29148 -16.90376 -16.53683 -16.28530 -16.22608 -15.98644 -15.63776 -15.50882 -14.90111 -14.66278 -14.61056 -14.36348 -13.99675 -13.88355 -13.72540 -13.32238 -13.17353 -12.87235 -12.73379 -12.62826 -12.56503 -12.32307 -12.01232 -11.82687 -11.78055 -11.77118 -11.71950 -11.52146 -10.87717 -10.82965 -10.70066 -9.90056 -9.56748 -9.11884 -8.79023 -8.02437 -6.41622 0.96417 1.28202 1.38626 1.50455 1.53445 1.61232 2.26439 2.50357 2.91340 3.02267 3.06435 3.25230 3.66497 3.76125 3.97569 4.05314 4.07298 4.14122 4.21966 4.33219 4.52960 4.54756 4.67198 4.69912 4.73506 4.78070 4.80952 4.86516 4.91108 4.96244 4.96704 5.02976 5.05546 5.10720 5.24448 5.27353 5.38067 5.67507 5.79745 5.84534 5.92709 6.06158 6.28682 6.40049 6.82650 7.05653 7.14688 7.95536 8.37423 8.58141 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.004029 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.162753 B = 6948.154485 C = 8387.975195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.061 3.939 4 O -0.394 6.394 5 C 0.055 3.945 6 C -0.122 4.122 7 H 0.102 0.898 8 C 0.104 3.896 9 N -0.648 5.648 10 C 0.681 3.319 11 O -0.514 6.514 12 N -0.659 5.659 13 C 0.364 3.636 14 C -0.345 4.345 15 C -0.032 4.032 16 C -0.330 4.330 17 C 0.238 3.762 18 C -0.468 4.468 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.687 5.687 22 Si 0.974 3.026 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.259 1.259 26 N -0.508 5.508 27 C 0.134 3.866 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.414 0.586 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.268 0.732 42 H 0.056 0.944 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 12.647 11.952 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.102 4.102 3 C -0.016 4.016 4 O -0.313 6.313 5 C -0.021 4.021 6 C -0.142 4.142 7 H 0.121 0.879 8 C -0.019 4.019 9 N -0.390 5.390 10 C 0.382 3.618 11 O -0.382 6.382 12 N -0.310 5.310 13 C 0.124 3.876 14 C -0.371 4.371 15 C -0.056 4.056 16 C -0.353 4.353 17 C 0.112 3.888 18 C -0.498 4.498 19 H 0.104 0.896 20 C -0.215 4.215 21 N -0.306 5.306 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.184 1.184 26 N -0.227 5.227 27 C 0.011 3.989 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.251 0.749 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.598 13.702 10.648 17.722 hybrid contribution -0.012 -1.198 -0.118 1.204 sum 3.586 12.504 10.530 16.736 Atomic orbital electron populations 1.21561 0.92499 1.01099 1.02753 1.22855 0.96795 0.95821 0.94758 1.23802 0.99880 0.94290 0.83612 1.89256 1.82419 1.33647 1.25943 1.23629 0.96275 0.81410 1.00821 1.23593 0.98196 0.96090 0.96313 0.87940 1.22743 0.97198 0.98571 0.83374 1.48371 1.66952 1.03398 1.20271 1.16135 0.80927 0.80033 0.84693 1.91379 1.45381 1.83591 1.17824 1.42379 1.61065 1.02487 1.25035 1.18850 0.93177 0.84225 0.91350 1.20896 1.21362 0.91541 1.03280 1.21024 0.93711 0.97020 0.93889 1.21814 1.16312 0.97983 0.99229 1.18873 0.89581 0.86785 0.93554 1.19886 1.35935 0.94485 0.99534 0.89559 1.27052 0.96213 0.94946 1.03325 1.70559 1.27072 0.97839 1.35094 0.85409 0.79465 0.78160 0.77523 1.18454 1.19976 1.18351 1.68649 1.18451 1.26383 1.09210 1.22385 0.99788 0.81026 0.95741 0.94593 0.90757 0.91783 0.90531 0.87672 0.87189 0.90464 0.88960 0.89563 0.74858 0.85061 0.84339 0.87684 0.92107 0.92536 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 8.75 71.98 0.63 -1.97 16 2 C -0.10 -2.01 1.09 -50.31 -0.05 -2.06 16 3 C 0.06 1.00 6.93 72.45 0.50 1.50 16 4 O -0.39 -7.25 11.67 -148.98 -1.74 -8.99 16 5 C 0.06 0.75 7.19 72.45 0.52 1.27 16 6 C -0.12 -2.08 3.87 -8.92 -0.03 -2.11 16 7 H 0.10 1.74 7.98 -2.39 -0.02 1.72 16 8 C 0.10 2.00 6.45 86.49 0.56 2.56 16 9 N -0.65 -19.91 3.32 -824.66 -2.74 -22.64 16 10 C 0.68 29.43 8.54 179.05 1.53 30.96 16 11 O -0.51 -28.25 12.38 -3.96 -0.05 -28.30 16 12 N -0.66 -26.72 5.36 -322.12 -1.73 -28.44 16 13 C 0.36 18.13 7.43 133.26 0.99 19.12 16 14 C -0.35 -14.94 9.95 22.72 0.23 -14.72 16 15 C -0.03 -1.42 10.15 22.40 0.23 -1.19 16 16 C -0.33 -16.95 9.83 22.87 0.22 -16.73 16 17 C 0.24 14.03 6.55 40.19 0.26 14.30 16 18 C -0.47 -27.24 9.14 23.46 0.21 -27.02 16 19 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 20 C 0.01 0.57 5.50 85.29 0.47 1.04 16 21 N -0.69 -40.86 8.98 21.84 0.20 -40.67 16 22 Si 0.97 41.63 29.56 68.60 2.03 43.66 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 N -0.51 -30.03 5.73 -186.37 -1.07 -31.10 16 27 C 0.13 3.54 6.22 86.51 0.54 4.08 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.11 7.14 -2.39 -0.02 1.10 16 32 H 0.11 1.51 7.91 -2.39 -0.02 1.49 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 0.86 7.14 -2.38 -0.02 0.84 16 35 H 0.09 1.42 7.14 -2.39 -0.02 1.40 16 36 H 0.09 1.46 6.92 -2.39 -0.02 1.44 16 37 H 0.41 12.54 7.16 -92.71 -0.66 11.88 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 40 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 41 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 42 H 0.06 1.85 7.66 -2.38 -0.02 1.83 16 43 H 0.08 1.89 7.15 -2.39 -0.02 1.87 16 Total: -1.00 -78.57 344.99 2.09 -76.48 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.38 Total: 30.97 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.80 Total: 9.02 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -5.33 Total: -122.85 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.79 Total: -37.29 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -78.57 2.09 -76.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.229 kcal (2) G-P(sol) polarization free energy of solvation -78.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds