Wall clock time and date at job start Tue Mar 31 2020 11:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.41879 * 2 1 4 4 O 1.44423 * 110.37038 * 237.69855 * 2 1 3 5 5 C 1.44430 * 105.27522 * 200.65538 * 4 2 1 6 6 C 1.54480 * 104.80009 * 40.50699 * 5 4 2 7 7 H 1.09000 * 118.18828 * 115.52500 * 6 5 4 8 8 C 1.52999 * 118.06808 * 273.17370 * 6 5 4 9 9 C 1.53001 * 60.65120 * 90.41084 * 8 6 5 10 10 N 1.46493 * 119.80550 * 113.33018 * 9 8 6 11 11 C 1.34784 * 120.00187 * 55.24789 * 10 9 8 12 12 O 1.21575 * 120.00048 * 5.15486 * 11 10 9 13 13 N 1.34776 * 120.00021 * 185.15507 * 11 10 9 14 14 C 1.39246 * 119.99720 * 174.83984 * 13 11 10 15 15 C 1.39692 * 119.57507 * 185.34322 * 14 13 11 16 16 C 1.38644 * 119.49678 * 179.97438 * 15 14 13 17 17 C 1.38354 * 118.66655 * 359.97438 * 16 15 14 18 18 C 1.40570 * 119.13621 * 0.02562 * 17 16 15 19 19 C 1.41334 * 119.78604 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00132 * 359.97438 * 19 18 17 21 21 C 1.40028 * 119.99832 * 180.02562 * 19 18 17 22 22 N 1.30745 * 119.99788 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00178 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47015 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47213 * 119.99812 * 23 21 19 26 26 H 1.48500 * 109.47111 * 240.00124 * 23 21 19 27 27 N 1.31906 * 119.57707 * 5.07004 * 14 13 11 28 28 H 1.09000 * 109.47126 * 302.64804 * 1 2 3 29 29 H 1.08996 * 109.47135 * 62.64626 * 1 2 3 30 30 H 1.09002 * 109.47105 * 182.64694 * 1 2 3 31 31 H 1.09000 * 109.47329 * 182.30909 * 3 2 1 32 32 H 1.09000 * 109.47592 * 302.31810 * 3 2 1 33 33 H 1.09007 * 109.47074 * 62.31482 * 3 2 1 34 34 H 1.09000 * 110.37223 * 159.33928 * 5 4 2 35 35 H 1.08998 * 110.36788 * 281.67741 * 5 4 2 36 36 H 1.09001 * 117.43229 * 342.73383 * 8 6 5 37 37 H 1.09001 * 117.43524 * 198.09093 * 8 6 5 38 38 H 0.96996 * 120.00405 * 235.24425 * 10 9 8 39 39 H 0.96998 * 120.00260 * 354.84518 * 13 11 10 40 40 H 1.07995 * 120.24903 * 359.97438 * 15 14 13 41 41 H 1.08001 * 120.66498 * 179.97438 * 16 15 14 42 42 H 1.08003 * 120.42796 * 180.02562 * 17 16 15 43 43 H 0.96999 * 119.99675 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0638 1.4339 0.0000 4 8 2.0327 -0.7235 -1.1444 5 6 3.3874 -1.0870 -0.7997 6 6 3.3178 -1.5056 0.6857 7 1 3.5421 -2.5416 0.9397 8 6 3.4592 -0.4143 1.7486 9 6 2.0678 -0.7741 1.2238 10 7 1.0928 -1.4035 2.1178 11 6 0.7663 -0.8108 3.2834 12 8 1.2085 0.2897 3.5506 13 7 -0.0503 -1.4382 4.1529 14 6 -0.3019 -0.8757 5.4016 15 6 -1.0580 -1.5852 6.3377 16 6 -1.3070 -1.0238 7.5807 17 6 -0.7943 0.2312 7.8570 18 6 -0.0409 0.8945 6.8729 19 6 0.4899 2.1768 7.1406 20 1 0.3158 2.6440 8.0986 21 6 1.2405 2.8418 6.1633 22 7 1.4508 2.2763 5.0034 23 14 1.9415 4.5368 6.5168 24 1 1.5633 4.9520 7.8915 25 1 3.4213 4.4944 6.4015 26 1 1.3964 5.5118 5.5383 27 7 0.1814 0.3180 5.6873 28 1 -0.3633 0.5544 0.8653 29 1 -0.3633 0.4722 -0.9127 30 1 -0.3633 -1.0266 0.0475 31 1 3.1529 1.4162 -0.0414 32 1 1.6757 1.9661 -0.8684 33 1 1.7431 1.9410 0.9101 34 1 3.7241 -1.9221 -1.4139 35 1 4.0524 -0.2322 -0.9223 36 1 3.8828 0.5400 1.4353 37 1 3.7110 -0.7291 2.7613 38 1 0.6820 -2.2468 1.8708 39 1 -0.4626 -2.2816 3.9089 40 1 -1.4455 -2.5635 6.0951 41 1 -1.8896 -1.5554 8.3185 42 1 -0.9706 0.6951 8.8162 43 1 1.9711 2.7368 4.3266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:38 Heat of formation + Delta-G solvation = 32.133305 kcal Electronic energy + Delta-G solvation = -27635.395303 eV Core-core repulsion = 23876.328644 eV Total energy + Delta-G solvation = -3759.066659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96888 -39.17842 -37.55272 -35.04387 -33.96156 -33.04376 -32.92144 -31.93824 -30.26410 -28.84871 -27.21068 -26.52177 -25.50185 -23.44934 -22.13412 -21.25064 -20.72169 -20.01802 -19.00087 -17.97072 -17.27567 -16.53418 -16.00644 -15.76706 -15.18561 -14.63686 -14.47884 -14.42651 -14.21742 -13.68830 -13.62180 -13.15755 -13.04781 -12.80159 -12.77874 -12.19227 -12.11188 -11.93221 -11.91917 -11.43805 -11.22956 -11.16235 -10.99085 -10.92734 -10.61897 -10.56291 -10.45668 -10.05567 -9.89743 -9.73835 -9.55278 -9.08125 -9.01472 -8.47052 -7.93826 -7.20159 -6.93409 -6.10101 -4.37306 2.84350 3.04550 3.13295 3.18350 3.21575 3.27824 3.50378 3.90651 4.07907 4.17858 4.38270 4.60225 4.71003 4.89023 4.94689 4.99409 5.07538 5.32750 5.34471 5.54488 5.72083 5.75430 5.84451 5.88572 5.95498 6.04584 6.06215 6.11025 6.15452 6.33162 6.35133 6.48402 6.60264 6.80616 6.85012 6.86480 7.00550 7.24497 7.35935 7.63289 7.74792 7.83162 8.18764 8.31366 8.66526 8.81481 9.07942 9.59741 10.27897 10.50716 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.004945 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.990534 B = 5660.650258 C = 7093.949139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.125 3.875 3 C -0.164 4.164 4 O -0.366 6.366 5 C 0.075 3.925 6 C -0.210 4.210 7 H 0.120 0.880 8 C -0.106 4.106 9 C 0.107 3.893 10 N -0.718 5.718 11 C 0.665 3.335 12 O -0.450 6.450 13 N -0.673 5.673 14 C 0.387 3.613 15 C -0.358 4.358 16 C -0.036 4.036 17 C -0.307 4.307 18 C 0.271 3.729 19 C -0.425 4.425 20 H 0.082 0.918 21 C 0.057 3.943 22 N -0.646 5.646 23 Si 0.892 3.108 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.276 1.276 27 N -0.470 5.470 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.387 0.613 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -6.321 -11.360 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 C -0.222 4.222 4 O -0.285 6.285 5 C -0.002 4.002 6 C -0.230 4.230 7 H 0.138 0.862 8 C -0.144 4.144 9 C 0.017 3.983 10 N -0.377 5.377 11 C 0.363 3.637 12 O -0.312 6.312 13 N -0.322 5.322 14 C 0.147 3.853 15 C -0.384 4.384 16 C -0.060 4.060 17 C -0.330 4.330 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.100 0.900 21 C -0.172 4.172 22 N -0.265 5.265 23 Si 0.717 3.283 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.201 1.201 27 N -0.188 5.188 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.220 0.780 39 H 0.227 0.773 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.994 -4.776 -12.119 13.625 hybrid contribution -0.538 -0.833 0.765 1.252 sum 3.457 -5.610 -11.354 13.127 Atomic orbital electron populations 1.21592 0.91865 1.02488 1.02419 1.22005 0.95442 0.91037 0.83082 1.22237 1.01228 0.95272 1.03419 1.89203 1.26725 1.74230 1.38388 1.22820 0.85091 0.99771 0.92496 1.24666 1.04115 0.99857 0.94343 0.86180 1.23268 0.94878 0.98126 0.98137 1.21685 0.83313 0.99586 0.93731 1.44354 1.47087 1.26256 1.19966 1.16408 0.81734 0.85627 0.79930 1.91387 1.51951 1.14827 1.73034 1.42550 1.49558 1.25262 1.14786 1.18331 0.92291 0.91542 0.83117 1.20432 1.17991 1.02616 0.97405 1.20539 0.96206 0.94628 0.94614 1.21623 1.11825 0.98206 1.01373 1.18384 0.88430 0.92530 0.86025 1.19599 1.26655 0.99177 1.00123 0.90025 1.26173 0.96726 0.98973 0.95352 1.70360 1.21448 1.33127 1.01530 0.86518 0.79138 0.83078 0.79601 1.18648 1.20133 1.20122 1.68686 1.24002 1.06412 1.19732 0.90573 0.92299 0.92254 0.92255 0.92074 0.89974 0.88784 0.91917 0.87948 0.87445 0.77972 0.77306 0.89229 0.88679 0.88642 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.29 37.16 0.31 -1.44 16 2 C 0.13 1.73 1.22 -89.85 -0.11 1.62 16 3 C -0.16 -2.22 8.10 37.16 0.30 -1.91 16 4 O -0.37 -4.89 11.10 -35.23 -0.39 -5.28 16 5 C 0.08 0.81 7.03 37.93 0.27 1.07 16 6 C -0.21 -2.47 7.21 -89.05 -0.64 -3.12 16 7 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 8 C -0.11 -1.52 8.73 -26.73 -0.23 -1.75 16 9 C 0.11 1.54 2.61 -130.26 -0.34 1.20 16 10 N -0.72 -10.80 4.39 -50.96 -0.22 -11.02 16 11 C 0.66 13.21 8.41 -86.91 -0.73 12.48 16 12 O -0.45 -10.89 11.56 5.30 0.06 -10.82 16 13 N -0.67 -13.15 5.39 -15.78 -0.09 -13.24 16 14 C 0.39 9.37 7.43 -154.99 -1.15 8.22 16 15 C -0.36 -8.03 9.96 -38.89 -0.39 -8.42 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.31 -7.74 9.83 -38.66 -0.38 -8.12 16 18 C 0.27 7.59 6.55 -85.00 -0.56 7.03 16 19 C -0.42 -11.65 9.14 -37.73 -0.34 -11.99 16 20 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 21 C 0.06 1.49 5.50 -17.34 -0.10 1.40 16 22 N -0.65 -17.54 8.98 55.55 0.50 -17.04 16 23 Si 0.89 19.15 29.56 -169.99 -5.02 14.12 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 27 N -0.47 -13.03 5.73 -10.26 -0.06 -13.09 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 31 H 0.06 0.72 5.40 -51.93 -0.28 0.44 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.62 7.23 -51.93 -0.38 0.25 16 36 H 0.10 1.39 6.28 -51.93 -0.33 1.06 16 37 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.39 4.71 8.85 -40.82 -0.36 4.35 16 39 H 0.39 5.97 8.72 -40.82 -0.36 5.61 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -32.05 349.83 -10.33 -42.38 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.88 Total: 13.64 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.49 Total: -4.92 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.13 Total: -54.39 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.33 Total: -16.11 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.05 -10.33 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.514 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds