Wall clock time and date at job start Tue Mar 31 2020 11:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.41879 * 2 1 4 4 O 1.44423 * 110.37038 * 237.69855 * 2 1 3 5 5 C 1.44430 * 105.27522 * 200.65538 * 4 2 1 6 6 C 1.54480 * 104.80009 * 40.50699 * 5 4 2 7 7 H 1.09000 * 118.18828 * 115.52500 * 6 5 4 8 8 C 1.52999 * 118.06808 * 273.17370 * 6 5 4 9 9 C 1.53001 * 60.65120 * 90.41084 * 8 6 5 10 10 N 1.46493 * 119.80550 * 113.33018 * 9 8 6 11 11 C 1.34784 * 120.00187 * 55.24789 * 10 9 8 12 12 O 1.21575 * 120.00048 * 5.15486 * 11 10 9 13 13 N 1.34776 * 120.00021 * 185.15507 * 11 10 9 14 14 C 1.39246 * 119.99720 * 174.83984 * 13 11 10 15 15 C 1.39692 * 119.57507 * 185.34322 * 14 13 11 16 16 C 1.38644 * 119.49678 * 179.97438 * 15 14 13 17 17 C 1.38354 * 118.66655 * 359.97438 * 16 15 14 18 18 C 1.40570 * 119.13621 * 0.02562 * 17 16 15 19 19 C 1.41334 * 119.78604 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00132 * 359.97438 * 19 18 17 21 21 C 1.40028 * 119.99832 * 180.02562 * 19 18 17 22 22 N 1.30745 * 119.99788 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00178 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47015 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47213 * 119.99812 * 23 21 19 26 26 H 1.48500 * 109.47111 * 240.00124 * 23 21 19 27 27 N 1.31906 * 119.57707 * 5.07004 * 14 13 11 28 28 H 1.09000 * 109.47126 * 302.64804 * 1 2 3 29 29 H 1.08996 * 109.47135 * 62.64626 * 1 2 3 30 30 H 1.09002 * 109.47105 * 182.64694 * 1 2 3 31 31 H 1.09000 * 109.47329 * 182.30909 * 3 2 1 32 32 H 1.09000 * 109.47592 * 302.31810 * 3 2 1 33 33 H 1.09007 * 109.47074 * 62.31482 * 3 2 1 34 34 H 1.09000 * 110.37223 * 159.33928 * 5 4 2 35 35 H 1.08998 * 110.36788 * 281.67741 * 5 4 2 36 36 H 1.09001 * 117.43229 * 342.73383 * 8 6 5 37 37 H 1.09001 * 117.43524 * 198.09093 * 8 6 5 38 38 H 0.96996 * 120.00405 * 235.24425 * 10 9 8 39 39 H 0.96998 * 120.00260 * 354.84518 * 13 11 10 40 40 H 1.07995 * 120.24903 * 359.97438 * 15 14 13 41 41 H 1.08001 * 120.66498 * 179.97438 * 16 15 14 42 42 H 1.08003 * 120.42796 * 180.02562 * 17 16 15 43 43 H 0.96999 * 119.99675 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0638 1.4339 0.0000 4 8 2.0327 -0.7235 -1.1444 5 6 3.3874 -1.0870 -0.7997 6 6 3.3178 -1.5056 0.6857 7 1 3.5421 -2.5416 0.9397 8 6 3.4592 -0.4143 1.7486 9 6 2.0678 -0.7741 1.2238 10 7 1.0928 -1.4035 2.1178 11 6 0.7663 -0.8108 3.2834 12 8 1.2085 0.2897 3.5506 13 7 -0.0503 -1.4382 4.1529 14 6 -0.3019 -0.8757 5.4016 15 6 -1.0580 -1.5852 6.3377 16 6 -1.3070 -1.0238 7.5807 17 6 -0.7943 0.2312 7.8570 18 6 -0.0409 0.8945 6.8729 19 6 0.4899 2.1768 7.1406 20 1 0.3158 2.6440 8.0986 21 6 1.2405 2.8418 6.1633 22 7 1.4508 2.2763 5.0034 23 14 1.9415 4.5368 6.5168 24 1 1.5633 4.9520 7.8915 25 1 3.4213 4.4944 6.4015 26 1 1.3964 5.5118 5.5383 27 7 0.1814 0.3180 5.6873 28 1 -0.3633 0.5544 0.8653 29 1 -0.3633 0.4722 -0.9127 30 1 -0.3633 -1.0266 0.0475 31 1 3.1529 1.4162 -0.0414 32 1 1.6757 1.9661 -0.8684 33 1 1.7431 1.9410 0.9101 34 1 3.7241 -1.9221 -1.4139 35 1 4.0524 -0.2322 -0.9223 36 1 3.8828 0.5400 1.4353 37 1 3.7110 -0.7291 2.7613 38 1 0.6820 -2.2468 1.8708 39 1 -0.4626 -2.2816 3.9089 40 1 -1.4455 -2.5635 6.0951 41 1 -1.8896 -1.5554 8.3185 42 1 -0.9706 0.6951 8.8162 43 1 1.9711 2.7368 4.3266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:37 Heat of formation + Delta-G solvation = 11.850804 kcal Electronic energy + Delta-G solvation = -27636.274818 eV Core-core repulsion = 23876.328644 eV Total energy + Delta-G solvation = -3759.946174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08659 -40.79580 -39.27993 -36.28960 -35.68768 -34.79200 -34.15361 -33.19428 -32.16091 -30.66766 -28.34678 -27.55294 -27.32990 -24.77493 -23.71747 -23.06695 -21.74644 -21.57824 -20.27142 -19.68315 -18.79735 -18.09034 -17.37936 -16.94472 -16.45741 -16.26877 -16.19028 -15.91165 -15.57055 -15.32246 -14.80749 -14.70107 -14.64121 -14.10266 -14.00184 -13.75737 -13.67876 -13.28224 -13.09932 -12.90985 -12.71194 -12.51819 -12.49345 -12.30228 -12.27129 -12.07988 -11.72957 -11.69706 -11.45979 -11.08182 -10.85397 -10.76569 -10.65053 -9.86853 -9.75666 -9.07948 -8.76371 -7.99906 -6.37940 0.98580 1.30145 1.40351 1.52228 1.53901 1.66122 2.27912 2.40589 2.61228 2.90955 3.06377 3.18399 3.40539 3.64385 3.83208 3.98129 4.03557 4.10159 4.18635 4.33824 4.38839 4.63954 4.69534 4.74661 4.75310 4.76276 4.83608 4.85982 4.87255 4.95493 4.98647 5.08110 5.08771 5.21264 5.24619 5.30797 5.68147 5.74877 5.82553 5.87554 5.94765 6.04369 6.32719 6.44154 6.84501 7.10340 7.26535 8.05291 8.40194 8.60610 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.004945 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.990534 B = 5660.650258 C = 7093.949139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.127 3.873 3 C -0.160 4.160 4 O -0.371 6.371 5 C 0.071 3.929 6 C -0.172 4.172 7 H 0.139 0.861 8 C -0.123 4.123 9 C 0.080 3.920 10 N -0.698 5.698 11 C 0.661 3.339 12 O -0.495 6.495 13 N -0.663 5.663 14 C 0.366 3.634 15 C -0.348 4.348 16 C -0.034 4.034 17 C -0.333 4.333 18 C 0.238 3.762 19 C -0.465 4.465 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.677 5.677 23 Si 0.968 3.032 24 H -0.256 1.256 25 H -0.271 1.271 26 H -0.272 1.272 27 N -0.502 5.502 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.404 0.596 39 H 0.415 0.585 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 -8.066 -12.768 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.086 3.914 3 C -0.218 4.218 4 O -0.290 6.290 5 C -0.005 4.005 6 C -0.191 4.191 7 H 0.157 0.843 8 C -0.161 4.161 9 C -0.010 4.010 10 N -0.357 5.357 11 C 0.359 3.641 12 O -0.360 6.360 13 N -0.313 5.313 14 C 0.126 3.874 15 C -0.373 4.373 16 C -0.058 4.058 17 C -0.356 4.356 18 C 0.113 3.887 19 C -0.496 4.496 20 H 0.101 0.899 21 C -0.214 4.214 22 N -0.295 5.295 23 Si 0.790 3.210 24 H -0.180 1.180 25 H -0.196 1.196 26 H -0.197 1.197 27 N -0.221 5.221 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.240 0.760 39 H 0.252 0.748 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.129 -6.602 -13.570 15.646 hybrid contribution -0.640 -0.475 1.161 1.409 sum 3.489 -7.077 -12.409 14.705 Atomic orbital electron populations 1.21518 0.92165 1.02664 1.01618 1.21897 0.95311 0.90989 0.83159 1.22175 1.02040 0.95269 1.02289 1.89196 1.28008 1.74048 1.37795 1.23107 0.84145 1.01451 0.91782 1.24777 1.00166 0.99801 0.94382 0.84305 1.23164 0.95545 0.99494 0.97864 1.21917 0.83555 1.01478 0.94028 1.43989 1.46803 1.26440 1.18444 1.16622 0.81343 0.85297 0.80839 1.91382 1.53453 1.16932 1.74273 1.42393 1.49544 1.25878 1.13498 1.18818 0.92343 0.91212 0.84996 1.20898 1.16048 1.03725 0.96634 1.21002 0.95430 0.93738 0.95608 1.21797 1.12706 0.99656 1.01400 1.18852 0.89383 0.93408 0.87071 1.19884 1.28694 1.00165 1.00889 0.89927 1.26960 0.96708 1.02792 0.94921 1.70546 1.22143 1.34620 1.02234 0.85368 0.78249 0.77878 0.79529 1.17962 1.19625 1.19684 1.68655 1.25214 1.08171 1.20055 0.93510 0.91145 0.91319 0.91063 0.90932 0.93070 0.85653 0.90856 0.87847 0.90075 0.75972 0.74782 0.85247 0.84666 0.87973 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 8.29 71.98 0.60 -2.71 16 2 C 0.13 3.40 1.22 -10.29 -0.01 3.39 16 3 C -0.16 -4.32 8.10 71.98 0.58 -3.74 16 4 O -0.37 -8.88 11.10 -148.98 -1.65 -10.53 16 5 C 0.07 1.29 7.03 72.49 0.51 1.80 16 6 C -0.17 -3.64 7.21 -9.78 -0.07 -3.71 16 7 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 8 C -0.12 -3.52 8.73 30.59 0.27 -3.25 16 9 C 0.08 2.25 2.61 4.62 0.01 2.26 16 10 N -0.70 -20.55 4.39 -433.41 -1.90 -22.46 16 11 C 0.66 26.66 8.41 179.05 1.51 28.16 16 12 O -0.49 -25.05 11.56 -3.95 -0.05 -25.10 16 13 N -0.66 -25.60 5.39 -322.11 -1.74 -27.33 16 14 C 0.37 17.76 7.43 133.26 0.99 18.75 16 15 C -0.35 -14.88 9.96 22.72 0.23 -14.66 16 16 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 17 C -0.33 -16.96 9.83 22.87 0.22 -16.74 16 18 C 0.24 13.83 6.55 40.19 0.26 14.09 16 19 C -0.47 -26.69 9.14 23.47 0.21 -26.47 16 20 H 0.08 4.48 7.85 -2.91 -0.02 4.45 16 21 C 0.01 0.68 5.50 85.29 0.47 1.14 16 22 N -0.68 -38.65 8.98 21.84 0.20 -38.45 16 23 Si 0.97 40.93 29.56 68.60 2.03 42.96 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 N -0.50 -28.75 5.73 -186.36 -1.07 -29.82 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 31 H 0.07 1.70 5.40 -2.39 -0.01 1.69 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.22 7.23 -2.39 -0.02 1.20 16 36 H 0.10 2.86 6.28 -2.39 -0.01 2.85 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.40 9.08 8.85 -92.71 -0.82 8.26 16 39 H 0.42 11.82 8.72 -92.71 -0.81 11.01 16 40 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 43 H 0.27 14.48 8.29 -92.71 -0.77 13.71 16 Total: -1.00 -73.32 349.83 1.25 -72.07 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -0.57 Total: 41.60 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 6.01 Total: -2.94 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -4.51 Total: -118.06 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.70 Total: -35.63 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -73.32 1.25 -72.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.921 kcal (2) G-P(sol) polarization free energy of solvation -73.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds