Wall clock time and date at job start Tue Mar 31 2020 11:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.21242 * 2 1 4 4 C 1.53000 * 109.47113 * 64.30231 * 3 2 1 5 5 C 1.50698 * 109.47382 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99905 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00082 * 180.02562 * 5 4 3 8 8 C 1.39273 * 120.00013 * 174.40463 * 7 5 4 9 9 C 1.39673 * 119.57260 * 341.10643 * 8 7 5 10 10 C 1.38659 * 119.49371 * 179.72856 * 9 8 7 11 11 C 1.38350 * 118.66775 * 0.52996 * 10 9 8 12 12 C 1.40581 * 119.13071 * 359.73286 * 11 10 9 13 13 C 1.41329 * 119.78702 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00374 * 6.37955 * 13 12 11 15 15 C 1.40035 * 119.99795 * 186.38568 * 13 12 11 16 16 N 1.30743 * 120.00075 * 353.64963 * 15 13 12 17 17 Si 1.86806 * 119.99762 * 173.65250 * 15 13 12 18 18 H 1.48498 * 109.47133 * 94.98395 * 17 15 13 19 19 H 1.48499 * 109.46819 * 214.98563 * 17 15 13 20 20 H 1.48498 * 109.46911 * 334.98021 * 17 15 13 21 21 N 1.31903 * 119.57355 * 161.37013 * 8 7 5 22 22 C 1.54480 * 110.24525 * 238.07397 * 2 1 3 23 23 C 1.54624 * 101.76475 * 215.58063 * 22 2 1 24 24 C 1.51276 * 104.19653 * 24.79708 * 23 22 2 25 25 O 1.21280 * 124.94262 * 163.74234 * 24 23 22 26 26 N 1.34415 * 110.11708 * 343.74833 * 24 23 22 27 27 H 1.09008 * 109.47364 * 181.92431 * 1 2 3 28 28 H 1.09004 * 109.47297 * 61.92996 * 1 2 3 29 29 H 1.08995 * 109.47528 * 301.92576 * 1 2 3 30 30 H 1.09000 * 109.47312 * 184.29987 * 3 2 1 31 31 H 1.08994 * 109.47722 * 304.29765 * 3 2 1 32 32 H 1.08997 * 109.47069 * 299.99583 * 4 3 2 33 33 H 1.09003 * 109.46834 * 59.99679 * 4 3 2 34 34 H 0.96998 * 119.99895 * 354.39699 * 7 5 4 35 35 H 1.07999 * 120.25163 * 359.97438 * 9 8 7 36 36 H 1.07994 * 120.66451 * 180.24154 * 10 9 8 37 37 H 1.07996 * 120.43595 * 179.74992 * 11 10 9 38 38 H 0.96995 * 120.00016 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.97055 * 333.70432 * 22 2 1 40 40 H 1.09002 * 110.96779 * 97.42669 * 22 2 1 41 41 H 1.09001 * 110.48850 * 143.47830 * 23 22 2 42 42 H 1.09004 * 110.49154 * 265.98686 * 23 22 2 43 43 H 0.97002 * 124.35301 * 179.56698 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4358 0.0000 4 6 1.6478 2.1305 1.2998 5 6 2.1690 3.5445 1.3002 6 8 2.8058 3.9562 0.3538 7 7 1.9273 4.3515 2.3522 8 6 2.5056 5.6174 2.4061 9 6 3.6169 5.9020 1.6093 10 6 4.1878 7.1646 1.6600 11 6 3.6410 8.1065 2.5132 12 6 2.5253 7.7569 3.2938 13 6 1.9559 8.7081 4.1704 14 1 2.3106 9.7281 4.1647 15 6 0.9318 8.3279 5.0465 16 7 0.4168 7.1287 4.9690 17 14 0.3013 9.5343 6.3258 18 1 -0.8949 10.2371 5.7964 19 1 -0.0641 8.7982 7.5627 20 1 1.3618 10.5266 6.6355 21 7 1.9998 6.5303 3.2126 22 6 2.0645 -0.7665 -1.2301 23 6 3.3287 -1.4451 -0.6538 24 6 3.0523 -1.5450 0.8301 25 8 3.6579 -2.2568 1.6031 26 7 2.0379 -0.7302 1.1674 27 1 -0.3634 -1.0271 0.0345 28 1 -0.3634 0.4836 -0.9068 29 1 -0.3634 0.5434 0.8722 30 1 3.1458 1.4227 -0.0770 31 1 1.6408 1.9769 -0.8489 32 1 0.5606 2.1436 1.3769 33 1 2.0657 1.5893 2.1488 34 1 1.3507 4.0507 3.0718 35 1 4.0260 5.1457 0.9559 36 1 5.0451 7.4064 1.0493 37 1 4.0654 9.0974 2.5784 38 1 -0.2928 6.8655 5.5756 39 1 1.3434 -1.5097 -1.5703 40 1 2.3229 -0.0793 -2.0358 41 1 3.4592 -2.4376 -1.0852 42 1 4.2098 -0.8308 -0.8393 43 1 1.6865 -0.6369 2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:17 Heat of formation + Delta-G solvation = -38.902831 kcal Electronic energy + Delta-G solvation = -25877.164535 eV Core-core repulsion = 22115.017518 eV Total energy + Delta-G solvation = -3762.147017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98170 -39.80535 -37.89176 -37.31193 -34.33764 -33.36376 -33.02775 -31.63875 -30.45566 -30.23616 -29.01522 -25.99819 -25.36869 -24.07379 -21.77755 -21.57765 -21.06215 -20.27563 -19.65170 -17.61834 -17.24263 -16.95471 -16.47842 -15.91701 -15.74032 -15.06818 -14.89384 -14.54092 -14.40722 -14.09243 -13.92748 -13.86687 -13.37273 -13.23991 -12.87122 -12.81921 -12.58441 -12.40401 -12.20836 -12.00198 -11.85809 -11.47101 -11.29336 -11.17740 -11.09443 -10.90850 -10.80963 -10.70505 -10.15922 -10.06468 -9.86930 -9.37655 -9.25768 -8.98666 -8.08013 -7.73145 -7.14522 -6.46660 -4.54333 2.40857 2.44493 2.86298 3.06226 3.08707 3.09503 3.19371 3.33858 3.49575 3.91880 3.98989 4.13991 4.37214 4.62606 4.66228 4.73623 4.88344 5.00648 5.07711 5.19677 5.22148 5.38628 5.41480 5.47335 5.61545 5.67084 5.72818 5.85322 5.89544 6.03635 6.13976 6.39151 6.59454 6.73573 6.76574 6.80621 6.81251 7.10105 7.43978 7.47441 7.81639 7.85720 8.04943 8.09408 8.25229 8.61298 8.67966 8.92967 10.00191 10.26910 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.002671 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.624950 B =10478.523575 C =11081.757481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 C -0.107 4.107 4 C -0.140 4.140 5 C 0.511 3.489 6 O -0.522 6.522 7 N -0.647 5.647 8 C 0.355 3.645 9 C -0.313 4.313 10 C -0.050 4.050 11 C -0.288 4.288 12 C 0.278 3.722 13 C -0.435 4.435 14 H 0.085 0.915 15 C 0.071 3.929 16 N -0.723 5.723 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.261 1.261 21 N -0.507 5.507 22 C -0.123 4.123 23 C -0.158 4.158 24 C 0.520 3.480 25 O -0.539 6.539 26 N -0.721 5.721 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.407 0.593 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 -14.586 -8.709 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 C -0.146 4.146 4 C -0.180 4.180 5 C 0.297 3.703 6 O -0.398 6.398 7 N -0.291 5.291 8 C 0.121 3.879 9 C -0.338 4.338 10 C -0.075 4.075 11 C -0.311 4.311 12 C 0.152 3.848 13 C -0.467 4.467 14 H 0.103 0.897 15 C -0.153 4.153 16 N -0.345 5.345 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.185 1.185 21 N -0.226 5.226 22 C -0.160 4.160 23 C -0.198 4.198 24 C 0.307 3.693 25 O -0.416 6.416 26 N -0.377 5.377 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.242 0.758 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.063 -15.059 -8.486 17.555 hybrid contribution -0.137 0.785 0.957 1.245 sum -3.200 -14.274 -7.529 16.452 Atomic orbital electron populations 1.22164 0.93100 1.02776 1.03565 1.21124 0.94721 0.91861 0.85480 1.21753 1.02581 0.92646 0.97607 1.21688 1.02875 0.92978 1.00478 1.20524 0.80463 0.87291 0.82009 1.90615 1.39420 1.75537 1.34261 1.43261 1.48505 1.14403 1.22922 1.18532 0.89658 0.85437 0.94298 1.21594 1.02141 0.99422 1.10595 1.20817 0.97202 0.93344 0.96098 1.21727 1.03511 0.99899 1.05971 1.18188 0.88334 0.88309 0.89987 1.19565 1.15267 0.96494 1.15366 0.89654 1.26042 0.95701 0.95610 0.97963 1.70115 1.16985 1.17497 1.29905 0.86320 0.79717 0.80929 0.79896 1.19543 1.20130 1.18475 1.68063 1.30540 1.01553 1.22431 1.22695 0.96680 0.99790 0.96874 1.22368 1.00169 1.03890 0.93382 1.20877 0.78992 0.78415 0.91039 1.90763 1.52070 1.41162 1.57638 1.46431 1.36289 1.43561 1.11407 0.91822 0.90557 0.91482 0.90403 0.89419 0.88574 0.89011 0.75777 0.85215 0.88325 0.88200 0.91846 0.89728 0.88725 0.88156 0.87609 0.75225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 8.58 37.16 0.32 -0.55 16 2 C 0.15 1.06 0.87 -130.90 -0.11 0.95 16 3 C -0.11 -0.98 3.67 -26.73 -0.10 -1.08 16 4 C -0.14 -1.48 5.28 -27.88 -0.15 -1.62 16 5 C 0.51 8.51 7.67 -10.99 -0.08 8.43 16 6 O -0.52 -10.37 12.78 5.56 0.07 -10.30 16 7 N -0.65 -12.47 5.41 -11.40 -0.06 -12.53 16 8 C 0.36 8.69 7.51 -154.97 -1.16 7.53 16 9 C -0.31 -7.58 8.83 -38.89 -0.34 -7.92 16 10 C -0.05 -1.18 10.15 -39.38 -0.40 -1.58 16 11 C -0.29 -7.24 9.83 -38.66 -0.38 -7.62 16 12 C 0.28 7.63 6.54 -85.00 -0.56 7.08 16 13 C -0.43 -11.54 9.13 -37.73 -0.34 -11.88 16 14 H 0.09 2.12 7.85 -52.49 -0.41 1.71 16 15 C 0.07 1.78 5.49 -17.34 -0.10 1.69 16 16 N -0.72 -18.54 11.49 55.55 0.64 -17.90 16 17 Si 0.91 18.26 29.56 -169.99 -5.03 13.24 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 N -0.51 -13.72 7.92 -10.25 -0.08 -13.80 16 22 C -0.12 -0.69 6.21 -25.10 -0.16 -0.84 16 23 C -0.16 -1.16 6.86 -26.75 -0.18 -1.34 16 24 C 0.52 5.64 8.43 -10.86 -0.09 5.55 16 25 O -0.54 -8.31 18.03 5.56 0.10 -8.21 16 26 N -0.72 -6.06 4.83 -46.62 -0.23 -6.28 16 27 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 6.53 -51.93 -0.34 0.03 16 30 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.10 0.81 6.56 -51.93 -0.34 0.47 16 33 H 0.09 0.88 7.36 -51.93 -0.38 0.50 16 34 H 0.41 6.99 8.83 -40.82 -0.36 6.63 16 35 H 0.13 3.08 5.34 -52.50 -0.28 2.80 16 36 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 39 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 40 H 0.09 0.45 7.89 -51.93 -0.41 0.04 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.41 3.15 8.64 -40.82 -0.35 2.80 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -34.09 356.48 -8.85 -42.94 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.80 Total: 10.71 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.84 Total: -3.23 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.27 Total: -50.52 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.51 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.09 -8.85 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.033 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds