Wall clock time and date at job start Tue Mar 31 2020 11:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.21242 * 2 1 4 4 C 1.53000 * 109.47113 * 64.30231 * 3 2 1 5 5 C 1.50698 * 109.47382 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99905 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00082 * 180.02562 * 5 4 3 8 8 C 1.39273 * 120.00013 * 174.40463 * 7 5 4 9 9 C 1.39673 * 119.57260 * 341.10643 * 8 7 5 10 10 C 1.38659 * 119.49371 * 179.72856 * 9 8 7 11 11 C 1.38350 * 118.66775 * 0.52996 * 10 9 8 12 12 C 1.40581 * 119.13071 * 359.73286 * 11 10 9 13 13 C 1.41329 * 119.78702 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00374 * 6.37955 * 13 12 11 15 15 C 1.40035 * 119.99795 * 186.38568 * 13 12 11 16 16 N 1.30743 * 120.00075 * 353.64963 * 15 13 12 17 17 Si 1.86806 * 119.99762 * 173.65250 * 15 13 12 18 18 H 1.48498 * 109.47133 * 94.98395 * 17 15 13 19 19 H 1.48499 * 109.46819 * 214.98563 * 17 15 13 20 20 H 1.48498 * 109.46911 * 334.98021 * 17 15 13 21 21 N 1.31903 * 119.57355 * 161.37013 * 8 7 5 22 22 C 1.54480 * 110.24525 * 238.07397 * 2 1 3 23 23 C 1.54624 * 101.76475 * 215.58063 * 22 2 1 24 24 C 1.51276 * 104.19653 * 24.79708 * 23 22 2 25 25 O 1.21280 * 124.94262 * 163.74234 * 24 23 22 26 26 N 1.34415 * 110.11708 * 343.74833 * 24 23 22 27 27 H 1.09008 * 109.47364 * 181.92431 * 1 2 3 28 28 H 1.09004 * 109.47297 * 61.92996 * 1 2 3 29 29 H 1.08995 * 109.47528 * 301.92576 * 1 2 3 30 30 H 1.09000 * 109.47312 * 184.29987 * 3 2 1 31 31 H 1.08994 * 109.47722 * 304.29765 * 3 2 1 32 32 H 1.08997 * 109.47069 * 299.99583 * 4 3 2 33 33 H 1.09003 * 109.46834 * 59.99679 * 4 3 2 34 34 H 0.96998 * 119.99895 * 354.39699 * 7 5 4 35 35 H 1.07999 * 120.25163 * 359.97438 * 9 8 7 36 36 H 1.07994 * 120.66451 * 180.24154 * 10 9 8 37 37 H 1.07996 * 120.43595 * 179.74992 * 11 10 9 38 38 H 0.96995 * 120.00016 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.97055 * 333.70432 * 22 2 1 40 40 H 1.09002 * 110.96779 * 97.42669 * 22 2 1 41 41 H 1.09001 * 110.48850 * 143.47830 * 23 22 2 42 42 H 1.09004 * 110.49154 * 265.98686 * 23 22 2 43 43 H 0.97002 * 124.35301 * 179.56698 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4358 0.0000 4 6 1.6478 2.1305 1.2998 5 6 2.1690 3.5445 1.3002 6 8 2.8058 3.9562 0.3538 7 7 1.9273 4.3515 2.3522 8 6 2.5056 5.6174 2.4061 9 6 3.6169 5.9020 1.6093 10 6 4.1878 7.1646 1.6600 11 6 3.6410 8.1065 2.5132 12 6 2.5253 7.7569 3.2938 13 6 1.9559 8.7081 4.1704 14 1 2.3106 9.7281 4.1647 15 6 0.9318 8.3279 5.0465 16 7 0.4168 7.1287 4.9690 17 14 0.3013 9.5343 6.3258 18 1 -0.8949 10.2371 5.7964 19 1 -0.0641 8.7982 7.5627 20 1 1.3618 10.5266 6.6355 21 7 1.9998 6.5303 3.2126 22 6 2.0645 -0.7665 -1.2301 23 6 3.3287 -1.4451 -0.6538 24 6 3.0523 -1.5450 0.8301 25 8 3.6579 -2.2568 1.6031 26 7 2.0379 -0.7302 1.1674 27 1 -0.3634 -1.0271 0.0345 28 1 -0.3634 0.4836 -0.9068 29 1 -0.3634 0.5434 0.8722 30 1 3.1458 1.4227 -0.0770 31 1 1.6408 1.9769 -0.8489 32 1 0.5606 2.1436 1.3769 33 1 2.0657 1.5893 2.1488 34 1 1.3507 4.0507 3.0718 35 1 4.0260 5.1457 0.9559 36 1 5.0451 7.4064 1.0493 37 1 4.0654 9.0974 2.5784 38 1 -0.2928 6.8655 5.5756 39 1 1.3434 -1.5097 -1.5703 40 1 2.3229 -0.0793 -2.0358 41 1 3.4592 -2.4376 -1.0852 42 1 4.2098 -0.8308 -0.8393 43 1 1.6865 -0.6369 2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:16 Heat of formation + Delta-G solvation = -62.054712 kcal Electronic energy + Delta-G solvation = -25878.168476 eV Core-core repulsion = 22115.017518 eV Total energy + Delta-G solvation = -3763.150958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80666 -41.23481 -39.56582 -38.27576 -36.02759 -35.11286 -33.96829 -32.35426 -32.25393 -31.40986 -30.36318 -27.53180 -26.48560 -24.93755 -23.53742 -23.16788 -21.79352 -21.39025 -20.76232 -19.37256 -18.64228 -18.07822 -17.69548 -16.96525 -16.81668 -16.61010 -16.30342 -15.90909 -15.68434 -15.35686 -15.03385 -14.72446 -14.63814 -14.51646 -14.07708 -13.93515 -13.73915 -13.41901 -13.20357 -13.00761 -12.93686 -12.85697 -12.64494 -12.56853 -12.43471 -12.16836 -11.86585 -11.77562 -11.57704 -11.46977 -11.04721 -10.92651 -10.56442 -10.12888 -9.99948 -9.66466 -8.99649 -8.33408 -6.52392 0.71960 1.07872 1.42287 1.50808 1.56737 1.58879 1.77806 2.10343 2.23562 2.42373 2.85619 3.35863 3.54524 3.59623 3.88710 3.94474 3.99843 4.10404 4.25569 4.33482 4.39510 4.52808 4.55873 4.65536 4.78210 4.86429 4.92369 4.93695 4.97756 4.99758 5.02345 5.15936 5.19379 5.22836 5.25697 5.41447 5.60659 5.66668 5.91468 5.92017 6.05539 6.08002 6.25680 6.51150 6.76859 6.92494 7.23418 7.27236 8.08307 8.43094 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.002671 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.624950 B =10478.523575 C =11081.757481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 C -0.103 4.103 4 C -0.127 4.127 5 C 0.508 3.492 6 O -0.554 6.554 7 N -0.648 5.648 8 C 0.346 3.654 9 C -0.328 4.328 10 C -0.049 4.049 11 C -0.310 4.310 12 C 0.244 3.756 13 C -0.466 4.466 14 H 0.090 0.910 15 C 0.027 3.973 16 N -0.752 5.752 17 Si 0.988 3.012 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.258 1.258 21 N -0.534 5.534 22 C -0.115 4.115 23 C -0.155 4.155 24 C 0.510 3.490 25 O -0.595 6.595 26 N -0.714 5.714 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.416 0.584 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.280 0.720 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -15.098 -9.159 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.074 3.926 3 C -0.142 4.142 4 C -0.167 4.167 5 C 0.298 3.702 6 O -0.431 6.431 7 N -0.293 5.293 8 C 0.110 3.890 9 C -0.353 4.353 10 C -0.074 4.074 11 C -0.333 4.333 12 C 0.118 3.882 13 C -0.498 4.498 14 H 0.109 0.891 15 C -0.195 4.195 16 N -0.374 5.374 17 Si 0.808 3.192 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.181 1.181 21 N -0.253 5.253 22 C -0.153 4.153 23 C -0.195 4.195 24 C 0.298 3.702 25 O -0.476 6.476 26 N -0.367 5.367 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.253 0.747 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.531 -15.584 -8.968 18.542 hybrid contribution 0.322 0.904 1.025 1.404 sum -4.210 -14.679 -7.943 17.213 Atomic orbital electron populations 1.22174 0.91394 1.03553 1.04305 1.21181 0.95805 0.90195 0.85454 1.21747 1.01656 0.94030 0.96799 1.21756 1.04472 0.88533 1.01896 1.21655 0.79259 0.88836 0.80474 1.90583 1.40744 1.76539 1.35267 1.43398 1.48705 1.13017 1.24161 1.18955 0.89770 0.86812 0.93444 1.21836 1.02506 0.99979 1.10946 1.21183 0.97693 0.92838 0.95658 1.21898 1.03721 1.00963 1.06697 1.18704 0.89455 0.89127 0.90956 1.19940 1.16547 0.96833 1.16439 0.89143 1.26954 0.95320 0.97591 0.99680 1.70179 1.17276 1.19149 1.30770 0.85110 0.79000 0.78229 0.76847 1.18785 1.19162 1.18138 1.68103 1.31481 1.02045 1.23719 1.22762 0.95992 1.00116 0.96389 1.22409 1.01224 1.04940 0.90959 1.21504 0.78713 0.77782 0.92242 1.90727 1.54019 1.43569 1.59320 1.46522 1.35422 1.42637 1.12159 0.91038 0.89347 0.91290 0.92108 0.89169 0.85604 0.87669 0.74747 0.84775 0.85247 0.86965 0.90935 0.87756 0.87389 0.86978 0.87429 0.74976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.58 71.98 0.62 -0.56 16 2 C 0.16 1.76 0.87 4.05 0.00 1.77 16 3 C -0.10 -1.69 3.67 30.59 0.11 -1.57 16 4 C -0.13 -2.42 5.28 29.85 0.16 -2.26 16 5 C 0.51 16.58 7.67 87.66 0.67 17.25 16 6 O -0.55 -21.83 12.78 -3.01 -0.04 -21.87 16 7 N -0.65 -24.97 5.41 -308.37 -1.67 -26.64 16 8 C 0.35 17.20 7.51 133.25 1.00 18.20 16 9 C -0.33 -16.08 8.83 22.72 0.20 -15.88 16 10 C -0.05 -2.34 10.15 22.40 0.23 -2.12 16 11 C -0.31 -15.86 9.83 22.87 0.22 -15.64 16 12 C 0.24 13.73 6.54 40.19 0.26 13.99 16 13 C -0.47 -25.17 9.13 23.47 0.21 -24.96 16 14 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 15 C 0.03 1.33 5.49 85.29 0.47 1.79 16 16 N -0.75 -38.78 11.49 21.84 0.25 -38.53 16 17 Si 0.99 37.14 29.56 68.60 2.03 39.17 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 19 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 N -0.53 -29.57 7.92 -186.36 -1.48 -31.04 16 22 C -0.12 -0.94 6.21 31.65 0.20 -0.75 16 23 C -0.16 -2.02 6.86 30.58 0.21 -1.81 16 24 C 0.51 10.69 8.43 87.90 0.74 11.43 16 25 O -0.59 -18.66 18.03 -3.03 -0.05 -18.71 16 26 N -0.71 -10.81 4.83 -420.00 -2.03 -12.84 16 27 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.09 0.51 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.51 6.53 -2.39 -0.02 0.50 16 30 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.13 1.73 6.56 -2.39 -0.02 1.71 16 33 H 0.11 1.80 7.36 -2.39 -0.02 1.78 16 34 H 0.42 14.22 8.83 -92.71 -0.82 13.40 16 35 H 0.13 6.41 5.34 -3.13 -0.02 6.39 16 36 H 0.13 5.17 8.06 -2.91 -0.02 5.14 16 37 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 38 H 0.28 12.88 8.29 -92.71 -0.77 12.11 16 39 H 0.10 0.51 7.91 -2.39 -0.02 0.50 16 40 H 0.11 0.67 7.89 -2.39 -0.02 0.65 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.37 8.14 -2.38 -0.02 1.36 16 43 H 0.41 5.71 8.64 -92.71 -0.80 4.90 16 Total: -1.00 -76.76 356.48 1.77 -74.99 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.56 Total: 36.60 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 5.31 Total: -1.12 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.92 Total: -109.05 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.09 Total: -40.59 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -76.76 1.77 -74.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.938 kcal (2) G-P(sol) polarization free energy of solvation -76.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds