Wall clock time and date at job start Tue Mar 31 2020 12:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53041 * 109.45949 * 2 1 4 4 C 1.53196 * 109.31262 * 181.36699 * 3 2 1 5 5 N 1.46924 * 108.77578 * 305.36967 * 4 3 2 6 6 C 1.34782 * 120.62611 * 233.58212 * 5 4 3 7 7 O 1.21360 * 119.99501 * 186.95515 * 6 5 4 8 8 C 1.49360 * 120.00106 * 6.95583 * 6 5 4 9 9 O 1.21358 * 120.00297 * 6.71944 * 8 6 5 10 10 N 1.34780 * 119.99917 * 186.72420 * 8 6 5 11 11 C 1.39112 * 119.99905 * 183.86906 * 10 8 6 12 12 C 1.39711 * 119.57945 * 339.11169 * 11 10 8 13 13 C 1.38654 * 119.49571 * 179.97438 * 12 11 10 14 14 C 1.38346 * 118.66923 * 359.97438 * 13 12 11 15 15 C 1.40595 * 119.13847 * 0.02562 * 14 13 12 16 16 C 1.41338 * 119.78630 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99921 * 5.11242 * 16 15 14 18 18 C 1.40031 * 119.99947 * 185.11083 * 16 15 14 19 19 N 1.30738 * 119.99916 * 184.84636 * 18 16 15 20 20 Si 1.86798 * 119.99981 * 4.84246 * 18 16 15 21 21 H 1.48502 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48507 * 109.47207 * 300.00140 * 20 18 16 23 23 H 1.48495 * 109.47413 * 59.99949 * 20 18 16 24 24 N 1.31936 * 119.57925 * 159.36819 * 11 10 8 25 25 C 1.46924 * 118.74388 * 53.85856 * 5 4 3 26 26 C 1.53043 * 109.44591 * 120.06035 * 2 1 3 27 27 H 1.09006 * 109.47262 * 59.99955 * 1 2 3 28 28 H 1.09004 * 109.47288 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47714 * 300.00268 * 1 2 3 30 30 H 1.08992 * 109.46088 * 240.02795 * 2 1 3 31 31 H 1.09010 * 109.49773 * 61.41957 * 3 2 1 32 32 H 1.08991 * 109.50010 * 301.31987 * 3 2 1 33 33 H 1.08995 * 109.58677 * 185.58055 * 4 3 2 34 34 H 1.09007 * 109.69798 * 65.22565 * 4 3 2 35 35 H 0.97002 * 119.99906 * 3.86237 * 10 8 6 36 36 H 1.07998 * 120.25215 * 359.95474 * 12 11 10 37 37 H 1.07994 * 120.66528 * 179.97438 * 13 12 11 38 38 H 1.08005 * 120.43221 * 180.02562 * 14 13 12 39 39 H 0.96994 * 119.99993 * 354.98433 * 19 18 16 40 40 H 1.08996 * 109.58369 * 65.92245 * 25 5 4 41 41 H 1.08995 * 109.59306 * 186.35142 * 25 5 4 42 42 H 1.08994 * 109.49884 * 298.57353 * 26 2 1 43 43 H 1.09000 * 109.49601 * 58.67001 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4392 -0.0345 5 7 4.0675 0.6238 1.0825 6 6 4.9616 1.1276 1.9563 7 8 5.4590 0.4084 2.7978 8 6 5.3401 2.5709 1.8888 9 8 4.7558 3.3167 1.1305 10 7 6.3307 3.0450 2.6702 11 6 6.6295 4.4036 2.6667 12 6 6.2387 5.1930 1.5822 13 6 6.5370 6.5470 1.5808 14 6 7.2171 7.0780 2.6623 15 6 7.5831 6.2314 3.7235 16 6 8.2788 6.7593 4.8348 17 1 8.4550 7.8224 4.9063 18 6 8.7394 5.9038 5.8432 19 7 9.2986 6.3995 6.9160 20 14 8.5549 4.0544 5.6556 21 1 9.1183 3.3769 6.8509 22 1 7.1161 3.7114 5.5236 23 1 9.2842 3.6047 4.4427 24 7 7.2828 4.9294 3.6853 25 6 3.5753 -0.7531 1.2254 26 6 2.0395 -0.7229 1.2490 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8931 -0.5134 -0.8902 31 1 1.6975 1.9498 0.9024 32 1 1.6574 1.9639 -0.8777 33 1 3.9416 2.4595 0.0652 34 1 3.9166 1.0156 -0.9777 35 1 6.8352 2.4388 3.2350 36 1 5.7086 4.7517 0.7512 37 1 6.2443 7.1747 0.7522 38 1 7.4637 8.1291 2.6910 39 1 9.4605 7.3535 6.9818 40 1 3.9187 -1.3532 0.3827 41 1 3.9481 -1.1798 2.1565 42 1 1.6972 -0.1957 2.1395 43 1 1.6568 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:58 Heat of formation + Delta-G solvation = -27.416812 kcal Electronic energy + Delta-G solvation = -26607.124571 eV Core-core repulsion = 22845.475625 eV Total energy + Delta-G solvation = -3761.648946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21702 -39.56175 -38.19367 -37.86986 -35.11569 -33.97932 -33.52511 -31.36632 -31.19387 -29.80717 -28.70537 -25.94719 -25.11725 -23.59558 -23.16664 -21.91442 -21.47263 -20.36724 -19.65817 -18.46816 -17.91924 -17.08760 -16.48974 -16.02449 -15.60081 -15.27053 -14.97637 -14.84963 -14.48216 -14.37383 -14.33970 -13.71709 -13.67042 -13.32821 -13.05345 -12.98339 -12.78891 -12.29888 -12.16516 -12.08555 -11.98706 -11.72863 -11.43877 -11.15285 -10.93809 -10.79494 -10.69273 -10.62020 -10.36827 -10.12180 -9.68838 -9.23589 -8.96442 -8.83043 -8.62260 -7.80111 -7.62446 -7.28483 -4.85299 1.22454 2.20940 2.46287 2.55674 3.22959 3.43543 3.55962 3.63425 3.96431 4.25302 4.37102 4.47351 4.50764 4.53963 4.57417 4.85354 5.03200 5.14514 5.24892 5.34912 5.36716 5.43020 5.51935 5.56521 5.64239 5.70319 5.73568 5.74710 5.85523 5.89573 6.07521 6.15422 6.18319 6.29960 6.42380 6.52712 6.90980 6.98284 7.06683 7.31124 7.39664 7.47769 7.63848 7.69474 7.99470 8.06849 8.26201 8.56291 9.29744 9.94706 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.003448 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.345030 B = 8117.547918 C = 9006.396067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.125 4.125 4 C 0.046 3.954 5 N -0.580 5.580 6 C 0.513 3.487 7 O -0.517 6.517 8 C 0.513 3.487 9 O -0.486 6.486 10 N -0.617 5.617 11 C 0.378 3.622 12 C -0.311 4.311 13 C -0.036 4.036 14 C -0.269 4.269 15 C 0.271 3.729 16 C -0.471 4.471 17 H 0.085 0.915 18 C 0.044 3.956 19 N -0.801 5.801 20 Si 1.150 2.850 21 H -0.329 1.329 22 H -0.279 1.279 23 H -0.293 1.293 24 N -0.594 5.594 25 C 0.107 3.893 26 C -0.129 4.129 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.063 0.937 35 H 0.419 0.581 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.284 0.716 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.081 -12.360 -13.340 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.163 4.163 4 C -0.075 4.075 5 N -0.314 5.314 6 C 0.295 3.705 7 O -0.393 6.393 8 C 0.295 3.705 9 O -0.362 6.362 10 N -0.262 5.262 11 C 0.147 3.853 12 C -0.336 4.336 13 C -0.060 4.060 14 C -0.292 4.292 15 C 0.147 3.853 16 C -0.503 4.503 17 H 0.103 0.897 18 C -0.178 4.178 19 N -0.422 5.422 20 Si 0.985 3.015 21 H -0.263 1.263 22 H -0.206 1.206 23 H -0.221 1.221 24 N -0.319 5.319 25 C -0.015 4.015 26 C -0.167 4.167 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.082 0.918 35 H 0.257 0.743 36 H 0.163 0.837 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.704 -14.033 -11.894 22.356 hybrid contribution -0.327 1.908 -1.155 2.254 sum -13.031 -12.126 -13.049 22.071 Atomic orbital electron populations 1.21823 0.95026 1.01593 1.01945 1.21185 0.95752 0.96467 0.98070 1.21918 0.95222 0.96165 1.02968 1.23311 0.94795 1.01751 0.87615 1.47919 1.41636 1.14271 1.27567 1.19906 0.80595 0.87875 0.82133 1.90777 1.52412 1.59851 1.36249 1.20031 0.80384 0.88743 0.81308 1.90212 1.51760 1.57568 1.36695 1.42951 1.32865 1.08390 1.41973 1.18069 0.94314 0.81936 0.90945 1.21685 1.15786 0.94651 1.01459 1.20946 0.94202 0.94330 0.96490 1.21663 1.10159 0.99887 0.97453 1.18277 0.89330 0.85304 0.92354 1.20762 1.29588 0.96697 1.03288 0.89690 1.27794 0.89615 1.10485 0.89931 1.70644 1.28816 1.17630 1.25155 0.81907 0.77467 0.69780 0.72342 1.26276 1.20645 1.22117 1.66031 1.25522 1.15027 1.25366 1.21833 0.94033 0.82044 1.03565 1.22065 0.94621 1.01207 0.98795 0.92583 0.92771 0.92643 0.91088 0.91378 0.90613 0.82479 0.91829 0.74320 0.83728 0.87336 0.87481 0.90489 0.90977 0.88735 0.91300 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.10 -0.72 2.68 -90.58 -0.24 -0.96 16 3 C -0.12 -1.11 5.36 -26.61 -0.14 -1.25 16 4 C 0.05 0.48 6.27 -3.71 -0.02 0.46 16 5 N -0.58 -6.98 2.97 -173.04 -0.51 -7.49 16 6 C 0.51 7.77 7.74 -11.63 -0.09 7.68 16 7 O -0.52 -8.81 15.95 5.49 0.09 -8.72 16 8 C 0.51 8.69 7.67 -11.63 -0.09 8.60 16 9 O -0.49 -8.24 9.76 5.49 0.05 -8.18 16 10 N -0.62 -12.00 5.39 -11.83 -0.06 -12.07 16 11 C 0.38 8.53 7.51 -155.09 -1.16 7.37 16 12 C -0.31 -6.59 8.90 -38.88 -0.35 -6.94 16 13 C -0.04 -0.74 10.15 -39.39 -0.40 -1.14 16 14 C -0.27 -6.20 9.83 -38.65 -0.38 -6.58 16 15 C 0.27 7.01 6.40 -84.99 -0.54 6.46 16 16 C -0.47 -12.68 9.57 -37.73 -0.36 -13.04 16 17 H 0.09 2.26 8.05 -52.49 -0.42 1.84 16 18 C 0.04 1.18 5.52 -17.35 -0.10 1.08 16 19 N -0.80 -21.71 13.65 55.55 0.76 -20.95 16 20 Si 1.15 28.28 25.61 -169.99 -4.35 23.93 16 21 H -0.33 -8.04 7.11 56.52 0.40 -7.64 16 22 H -0.28 -6.84 6.61 56.52 0.37 -6.46 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 N -0.59 -15.00 4.54 -10.27 -0.05 -15.05 16 25 C 0.11 1.03 6.44 -3.48 -0.02 1.01 16 26 C -0.13 -1.03 5.38 -26.38 -0.14 -1.17 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.16 1.99 3.78 -53.62 -0.20 1.79 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.42 7.88 8.33 -40.82 -0.34 7.54 16 36 H 0.15 2.85 5.16 -49.83 -0.26 2.59 16 37 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.11 2.29 8.06 -52.48 -0.42 1.86 16 39 H 0.28 7.32 8.72 -40.82 -0.36 6.96 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.01 7.05 -51.93 -0.37 0.64 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -29.21 345.91 -8.41 -37.62 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.84 Total: 4.75 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.70 Total: 0.96 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.13 Total: -55.56 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.14 Total: -16.90 kcal Atomic # 14 Polarization: 28.28 SS G_CDS: -4.35 Total: 23.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.21 -8.41 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.199 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds