Wall clock time and date at job start Tue Mar 31 2020 12:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53041 * 109.45949 * 2 1 4 4 C 1.53196 * 109.31262 * 181.36699 * 3 2 1 5 5 N 1.46924 * 108.77578 * 305.36967 * 4 3 2 6 6 C 1.34782 * 120.62611 * 233.58212 * 5 4 3 7 7 O 1.21360 * 119.99501 * 186.95515 * 6 5 4 8 8 C 1.49360 * 120.00106 * 6.95583 * 6 5 4 9 9 O 1.21358 * 120.00297 * 6.71944 * 8 6 5 10 10 N 1.34780 * 119.99917 * 186.72420 * 8 6 5 11 11 C 1.39112 * 119.99905 * 183.86906 * 10 8 6 12 12 C 1.39711 * 119.57945 * 339.11169 * 11 10 8 13 13 C 1.38654 * 119.49571 * 179.97438 * 12 11 10 14 14 C 1.38346 * 118.66923 * 359.97438 * 13 12 11 15 15 C 1.40595 * 119.13847 * 0.02562 * 14 13 12 16 16 C 1.41338 * 119.78630 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99921 * 5.11242 * 16 15 14 18 18 C 1.40031 * 119.99947 * 185.11083 * 16 15 14 19 19 N 1.30738 * 119.99916 * 184.84636 * 18 16 15 20 20 Si 1.86798 * 119.99981 * 4.84246 * 18 16 15 21 21 H 1.48502 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48507 * 109.47207 * 300.00140 * 20 18 16 23 23 H 1.48495 * 109.47413 * 59.99949 * 20 18 16 24 24 N 1.31936 * 119.57925 * 159.36819 * 11 10 8 25 25 C 1.46924 * 118.74388 * 53.85856 * 5 4 3 26 26 C 1.53043 * 109.44591 * 120.06035 * 2 1 3 27 27 H 1.09006 * 109.47262 * 59.99955 * 1 2 3 28 28 H 1.09004 * 109.47288 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47714 * 300.00268 * 1 2 3 30 30 H 1.08992 * 109.46088 * 240.02795 * 2 1 3 31 31 H 1.09010 * 109.49773 * 61.41957 * 3 2 1 32 32 H 1.08991 * 109.50010 * 301.31987 * 3 2 1 33 33 H 1.08995 * 109.58677 * 185.58055 * 4 3 2 34 34 H 1.09007 * 109.69798 * 65.22565 * 4 3 2 35 35 H 0.97002 * 119.99906 * 3.86237 * 10 8 6 36 36 H 1.07998 * 120.25215 * 359.95474 * 12 11 10 37 37 H 1.07994 * 120.66528 * 179.97438 * 13 12 11 38 38 H 1.08005 * 120.43221 * 180.02562 * 14 13 12 39 39 H 0.96994 * 119.99993 * 354.98433 * 19 18 16 40 40 H 1.08996 * 109.58369 * 65.92245 * 25 5 4 41 41 H 1.08995 * 109.59306 * 186.35142 * 25 5 4 42 42 H 1.08994 * 109.49884 * 298.57353 * 26 2 1 43 43 H 1.09000 * 109.49601 * 58.67001 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4392 -0.0345 5 7 4.0675 0.6238 1.0825 6 6 4.9616 1.1276 1.9563 7 8 5.4590 0.4084 2.7978 8 6 5.3401 2.5709 1.8888 9 8 4.7558 3.3167 1.1305 10 7 6.3307 3.0450 2.6702 11 6 6.6295 4.4036 2.6667 12 6 6.2387 5.1930 1.5822 13 6 6.5370 6.5470 1.5808 14 6 7.2171 7.0780 2.6623 15 6 7.5831 6.2314 3.7235 16 6 8.2788 6.7593 4.8348 17 1 8.4550 7.8224 4.9063 18 6 8.7394 5.9038 5.8432 19 7 9.2986 6.3995 6.9160 20 14 8.5549 4.0544 5.6556 21 1 9.1183 3.3769 6.8509 22 1 7.1161 3.7114 5.5236 23 1 9.2842 3.6047 4.4427 24 7 7.2828 4.9294 3.6853 25 6 3.5753 -0.7531 1.2254 26 6 2.0395 -0.7229 1.2490 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8931 -0.5134 -0.8902 31 1 1.6975 1.9498 0.9024 32 1 1.6574 1.9639 -0.8777 33 1 3.9416 2.4595 0.0652 34 1 3.9166 1.0156 -0.9777 35 1 6.8352 2.4388 3.2350 36 1 5.7086 4.7517 0.7512 37 1 6.2443 7.1747 0.7522 38 1 7.4637 8.1291 2.6910 39 1 9.4605 7.3535 6.9818 40 1 3.9187 -1.3532 0.3827 41 1 3.9481 -1.1798 2.1565 42 1 1.6972 -0.1957 2.1395 43 1 1.6568 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:57 Heat of formation + Delta-G solvation = -44.562533 kcal Electronic energy + Delta-G solvation = -26607.868065 eV Core-core repulsion = 22845.475625 eV Total energy + Delta-G solvation = -3762.392440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.51566 -40.95049 -39.67963 -38.91317 -36.60811 -35.51775 -34.82640 -33.04639 -32.11157 -31.55942 -29.52315 -27.57818 -26.53628 -24.39972 -24.28814 -23.66494 -22.71074 -21.63777 -20.76025 -20.25571 -19.21745 -18.48911 -17.85223 -17.34206 -16.98989 -16.88005 -16.28816 -15.92381 -15.74638 -15.47321 -15.32593 -15.11288 -14.84401 -14.73975 -14.46278 -14.29220 -14.19187 -13.90097 -13.69121 -12.98594 -12.82044 -12.78025 -12.70008 -12.28697 -12.25440 -12.16480 -11.91933 -11.81391 -11.67042 -11.43699 -11.33516 -11.18662 -10.49414 -10.06487 -9.87034 -9.73568 -9.44052 -9.24086 -6.84798 -0.13276 0.66910 0.78482 1.00955 1.55510 1.65969 1.92234 1.98725 2.24056 2.40355 2.62688 2.98175 3.50884 3.80220 3.84055 3.88346 4.02604 4.11044 4.22122 4.33224 4.43067 4.54470 4.57691 4.63833 4.66911 4.74184 4.76764 4.90346 4.90676 5.06273 5.06782 5.10484 5.16660 5.26820 5.32866 5.36902 5.37709 5.45392 5.53350 5.65291 5.69340 5.85837 5.96472 6.10043 6.34776 6.48289 6.62457 6.70435 7.43570 7.93426 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.003448 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.345030 B = 8117.547918 C = 9006.396067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.122 4.122 4 C 0.044 3.956 5 N -0.568 5.568 6 C 0.513 3.487 7 O -0.543 6.543 8 C 0.516 3.484 9 O -0.484 6.484 10 N -0.626 5.626 11 C 0.363 3.637 12 C -0.298 4.298 13 C -0.025 4.025 14 C -0.282 4.282 15 C 0.256 3.744 16 C -0.505 4.505 17 H 0.073 0.927 18 C 0.018 3.982 19 N -0.828 5.828 20 Si 1.180 2.820 21 H -0.330 1.330 22 H -0.282 1.282 23 H -0.292 1.292 24 N -0.614 5.614 25 C 0.102 3.898 26 C -0.124 4.124 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.420 0.580 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.283 0.717 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.293 -14.037 -16.572 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.160 4.160 4 C -0.077 4.077 5 N -0.301 5.301 6 C 0.294 3.706 7 O -0.421 6.421 8 C 0.300 3.700 9 O -0.360 6.360 10 N -0.272 5.272 11 C 0.133 3.867 12 C -0.322 4.322 13 C -0.049 4.049 14 C -0.304 4.304 15 C 0.131 3.869 16 C -0.538 4.538 17 H 0.092 0.908 18 C -0.200 4.200 19 N -0.451 5.451 20 Si 1.014 2.986 21 H -0.264 1.264 22 H -0.210 1.210 23 H -0.220 1.220 24 N -0.340 5.340 25 C -0.019 4.019 26 C -0.162 4.162 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.105 0.895 35 H 0.257 0.743 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.967 -15.731 -15.180 26.494 hybrid contribution 0.147 2.366 -0.448 2.412 sum -14.820 -13.366 -15.628 25.348 Atomic orbital electron populations 1.21798 0.94251 1.02292 1.01831 1.21181 0.96344 0.95295 0.98261 1.21907 0.93842 0.97417 1.02815 1.23336 0.95941 1.00565 0.87812 1.48102 1.39963 1.15345 1.26670 1.19567 0.81490 0.86732 0.82765 1.90774 1.53792 1.59922 1.37592 1.20449 0.79404 0.89763 0.80408 1.90227 1.51347 1.58116 1.36336 1.43045 1.33950 1.07235 1.42939 1.18434 0.93981 0.83449 0.90795 1.22130 1.14029 0.94916 1.01112 1.21421 0.92201 0.94550 0.96708 1.21859 1.10659 1.00385 0.97479 1.18477 0.89383 0.86157 0.92886 1.20737 1.32037 0.96273 1.04738 0.90842 1.28380 0.89441 1.12198 0.89958 1.70655 1.31018 1.17631 1.25802 0.81478 0.77049 0.67960 0.72106 1.26367 1.21041 1.21993 1.65929 1.26231 1.15079 1.26748 1.22095 0.95178 0.80540 1.04042 1.22060 0.93161 1.02505 0.98495 0.91935 0.91697 0.93571 0.89548 0.93245 0.89029 0.84394 0.89477 0.74257 0.81719 0.82916 0.86275 0.90636 0.88524 0.89961 0.92908 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 71.98 0.66 -0.78 16 2 C -0.09 -1.05 2.68 -10.77 -0.03 -1.08 16 3 C -0.12 -1.81 5.36 30.67 0.16 -1.65 16 4 C 0.04 0.79 6.27 86.36 0.54 1.33 16 5 N -0.57 -12.40 2.97 -819.74 -2.43 -14.83 16 6 C 0.51 14.90 7.74 87.24 0.68 15.58 16 7 O -0.54 -18.18 15.95 -3.28 -0.05 -18.23 16 8 C 0.52 16.81 7.67 87.24 0.67 17.48 16 9 O -0.48 -15.39 9.76 -3.27 -0.03 -15.42 16 10 N -0.63 -23.90 5.39 -309.71 -1.67 -25.57 16 11 C 0.36 16.03 7.51 133.30 1.00 17.03 16 12 C -0.30 -11.83 8.90 22.73 0.20 -11.63 16 13 C -0.02 -0.95 10.15 22.39 0.23 -0.72 16 14 C -0.28 -12.63 9.83 22.87 0.22 -12.40 16 15 C 0.26 13.32 6.40 40.20 0.26 13.58 16 16 C -0.51 -28.07 9.57 23.47 0.22 -27.84 16 17 H 0.07 4.10 8.05 -2.91 -0.02 4.07 16 18 C 0.02 0.98 5.52 85.29 0.47 1.45 16 19 N -0.83 -46.53 13.65 21.84 0.30 -46.23 16 20 Si 1.18 58.90 25.61 68.60 1.76 60.65 16 21 H -0.33 -16.23 7.11 99.48 0.71 -15.52 16 22 H -0.28 -14.05 6.61 99.48 0.66 -13.39 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 24 N -0.61 -31.00 4.54 -186.42 -0.85 -31.85 16 25 C 0.10 1.69 6.44 86.51 0.56 2.25 16 26 C -0.12 -1.61 5.38 30.82 0.17 -1.45 16 27 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.14 3.14 3.78 -73.64 -0.28 2.86 16 34 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.42 15.78 8.33 -92.71 -0.77 15.01 16 36 H 0.17 5.90 5.16 -5.26 -0.03 5.88 16 37 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 39 H 0.28 15.27 8.72 -92.71 -0.81 14.46 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.61 7.05 -2.39 -0.02 1.60 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.01 345.91 2.94 -61.07 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.10 Total: 19.26 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.01 Total: 11.14 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.65 Total: -118.48 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.08 Total: -33.65 kcal Atomic # 14 Polarization: 58.90 SS G_CDS: 1.76 Total: 60.65 kcal Total: -64.01 2.94 -61.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.509 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds