Wall clock time and date at job start Tue Mar 31 2020 11:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.49143 * 2 1 4 4 C 1.53093 * 109.48123 * 120.02962 * 2 1 3 5 5 C 1.53179 * 109.16235 * 62.37222 * 4 2 1 6 6 C 1.53176 * 109.03818 * 56.98189 * 5 4 2 7 7 C 1.53086 * 109.16495 * 303.02046 * 6 5 4 8 8 H 1.09003 * 109.48074 * 297.61672 * 7 6 5 9 9 C 1.52997 * 109.48363 * 177.58976 * 7 6 5 10 10 S 1.81401 * 109.47149 * 179.97438 * 9 7 6 11 11 O 1.42093 * 110.54547 * 291.62539 * 10 9 7 12 12 O 1.42105 * 110.53941 * 68.37879 * 10 9 7 13 13 N 1.65595 * 104.44822 * 179.97438 * 10 9 7 14 14 C 1.47073 * 136.06232 * 269.62992 * 13 10 9 15 15 C 1.53755 * 87.89066 * 152.96329 * 14 13 10 16 16 C 1.50697 * 114.26590 * 139.79356 * 15 14 13 17 17 H 1.08007 * 119.99798 * 266.47593 * 16 15 14 18 18 C 1.37871 * 120.00040 * 86.47875 * 16 15 14 19 19 N 1.31521 * 120.00208 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00126 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46900 * 59.99453 * 20 18 16 22 22 H 1.48499 * 109.47047 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46975 * 299.99731 * 20 18 16 24 24 C 1.47072 * 136.05444 * 90.00052 * 13 10 9 25 25 O 1.42904 * 109.41726 * 57.60341 * 7 6 5 26 26 H 1.08996 * 109.47217 * 299.97005 * 1 2 3 27 27 H 1.09001 * 109.47211 * 59.97385 * 1 2 3 28 28 H 1.09002 * 109.47526 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47069 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47100 * 300.02440 * 3 2 1 31 31 H 1.09001 * 109.46888 * 60.02808 * 3 2 1 32 32 H 1.09001 * 109.52192 * 302.46723 * 4 2 1 33 33 H 1.08999 * 109.57693 * 182.30906 * 4 2 1 34 34 H 1.09004 * 109.54764 * 297.11291 * 5 4 2 35 35 H 1.09006 * 109.54455 * 176.85136 * 5 4 2 36 36 H 1.09000 * 109.52077 * 183.11076 * 6 5 4 37 37 H 1.08999 * 109.56996 * 62.95590 * 6 5 4 38 38 H 1.09002 * 109.47153 * 59.99800 * 9 7 6 39 39 H 1.09001 * 109.46832 * 299.99991 * 9 7 6 40 40 H 1.08994 * 113.46965 * 267.70266 * 14 13 10 41 41 H 1.09007 * 113.46318 * 38.13566 * 14 13 10 42 42 H 1.09004 * 114.39582 * 272.67929 * 15 14 13 43 43 H 0.96993 * 119.99683 * 180.02562 * 19 18 16 44 44 H 1.08996 * 113.46982 * 321.86407 * 24 13 10 45 45 H 1.09006 * 113.46489 * 92.25048 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 1.5756 -2.1814 1.2121 6 6 2.0763 -2.8323 -0.0809 7 6 1.5645 -2.0286 -1.2791 8 1 0.4749 -2.0552 -1.2959 9 6 2.1098 -2.6374 -2.5724 10 16 1.5025 -1.6852 -3.9920 11 8 0.1015 -1.8628 -4.1489 12 8 2.0830 -0.3882 -4.0075 13 7 2.1608 -2.4423 -5.3094 14 6 3.3960 -2.3137 -6.0973 15 6 3.2564 -3.8028 -6.4538 16 6 3.5999 -4.1322 -7.8836 17 1 2.8222 -4.1634 -8.6324 18 6 4.9069 -4.3940 -8.2358 19 7 5.8540 -4.3556 -7.3240 20 14 5.3329 -4.8017 -10.0084 21 1 4.9457 -3.6666 -10.8841 22 1 6.7940 -5.0408 -10.1239 23 1 4.5975 -6.0224 -10.4260 24 6 1.7646 -3.5351 -6.2104 25 8 2.0065 -0.6743 -1.1664 26 1 -0.3633 0.5133 0.8902 27 1 -0.3634 0.5142 -0.8897 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1305 1.4419 -0.0005 30 1 1.6769 1.9564 -0.8898 31 1 1.6777 1.9561 0.8903 32 1 1.6421 -0.2358 2.1399 33 1 3.1297 -0.6875 1.2721 34 1 0.4866 -2.2180 1.2408 35 1 1.9824 -2.7158 2.0707 36 1 1.7035 -3.8547 -0.1420 37 1 3.1663 -2.8410 -0.0870 38 1 1.7734 -3.6707 -2.6577 39 1 3.1994 -2.6102 -2.5555 40 1 3.2957 -1.6504 -6.9564 41 1 4.2753 -2.0911 -5.4927 42 1 3.7117 -4.4827 -5.7336 43 1 6.7736 -4.5394 -7.5720 44 1 1.2540 -4.3531 -5.7024 45 1 1.2333 -3.1939 -7.0991 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885293975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:18 Heat of formation + Delta-G solvation = -94.421919 kcal Electronic energy + Delta-G solvation = -25937.650584 eV Core-core repulsion = 22276.247279 eV Total energy + Delta-G solvation = -3661.403305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.30079 -38.17050 -36.56421 -35.42868 -34.63782 -33.89251 -32.59628 -30.43527 -28.28544 -27.68299 -26.76808 -24.89886 -24.51802 -23.06406 -21.98684 -19.78763 -19.50855 -18.10954 -17.10030 -16.77218 -16.43961 -16.07089 -15.81499 -15.46297 -15.23240 -14.58996 -14.47967 -14.02788 -13.82021 -13.39567 -13.22045 -12.99641 -12.83048 -12.68574 -12.28211 -12.26214 -12.10896 -11.89519 -11.65960 -11.59533 -11.53376 -11.45534 -11.44489 -11.34375 -11.21266 -11.12408 -10.94170 -10.64004 -10.51165 -10.30107 -10.15936 -9.51622 -9.18419 -9.06095 -8.55166 -8.13636 -6.13719 -4.18093 0.65286 3.18409 3.28843 3.33775 3.33973 3.36914 4.17288 4.37158 4.40543 4.48206 4.50667 4.54184 4.64562 4.75897 4.86484 4.98836 5.04196 5.14756 5.21062 5.31124 5.33361 5.47639 5.52516 5.60606 5.63019 5.71021 5.72123 5.77248 5.85854 5.88372 5.92647 6.09988 6.16444 6.20885 6.30180 6.43497 6.56007 6.76756 6.89184 7.07247 7.53099 7.66963 7.84231 8.25251 8.85036 9.47716 10.96053 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.003195 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.443792 B = 8761.585022 C = 8977.473103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.111 3.889 3 C -0.139 4.139 4 C -0.143 4.143 5 C -0.126 4.126 6 C -0.141 4.141 7 C 0.099 3.901 8 H 0.073 0.927 9 C -0.629 4.629 10 S 2.634 3.366 11 O -0.971 6.971 12 O -0.945 6.945 13 N -1.053 6.053 14 C 0.132 3.868 15 C 0.033 3.967 16 C -0.517 4.517 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.887 5.887 20 Si 0.895 3.105 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.125 3.875 25 O -0.365 6.365 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.264 0.736 44 H 0.053 0.947 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 4.548 17.634 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.072 3.928 3 C -0.197 4.197 4 C -0.181 4.181 5 C -0.163 4.163 6 C -0.180 4.180 7 C 0.040 3.960 8 H 0.091 0.909 9 C -0.756 4.756 10 S 2.729 3.271 11 O -0.961 6.961 12 O -0.936 6.936 13 N -0.894 5.894 14 C 0.007 3.993 15 C 0.012 3.988 16 C -0.556 4.556 17 H 0.081 0.919 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.000 4.000 25 O -0.285 6.285 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.936 5.505 17.733 20.193 hybrid contribution 0.584 -0.895 -0.371 1.131 sum -7.353 4.610 17.363 19.411 Atomic orbital electron populations 1.22544 0.95750 1.02885 1.03286 1.21533 0.93173 0.93081 0.85050 1.21771 1.02253 0.92976 1.02650 1.22201 1.02057 0.95851 0.97947 1.21677 1.01206 0.95744 0.97689 1.22142 1.02481 0.99483 0.93875 1.21629 0.98050 0.83205 0.93143 0.90898 1.30737 1.14143 1.15042 1.15679 1.04093 0.73846 0.74536 0.74613 1.93526 1.30302 1.86975 1.85321 1.93555 1.78948 1.35252 1.85804 1.59995 1.36078 1.52286 1.41030 1.23059 0.82539 1.02032 0.91681 1.20543 0.88827 0.91682 0.97795 1.20959 0.93325 1.48160 0.93134 0.91881 1.25026 0.96488 0.94544 0.97503 1.69936 1.00913 1.48282 1.33304 0.86611 0.77232 0.79053 0.84842 1.20060 1.21300 1.20124 1.22799 1.00826 0.85830 0.90509 1.88117 1.73747 1.23092 1.43523 0.91155 0.91315 0.91782 0.91540 0.91248 0.91150 0.90797 0.90778 0.91425 0.91178 0.90453 0.90401 0.84006 0.84094 0.91043 0.92481 0.91437 0.92640 0.92864 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 7.93 37.16 0.29 -1.57 16 2 C 0.11 1.24 1.11 -90.58 -0.10 1.14 16 3 C -0.14 -1.42 8.85 37.16 0.33 -1.09 16 4 C -0.14 -1.28 4.92 -26.59 -0.13 -1.41 16 5 C -0.13 -1.07 5.72 -26.55 -0.15 -1.23 16 6 C -0.14 -1.45 5.42 -26.60 -0.14 -1.59 16 7 C 0.10 1.29 2.37 -26.69 -0.06 1.23 16 8 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 9 C -0.63 -8.87 5.90 37.16 0.22 -8.65 16 10 S 2.63 48.76 5.76 -107.50 -0.62 48.14 16 11 O -0.97 -19.69 18.07 -57.54 -1.04 -20.73 16 12 O -0.95 -20.21 17.40 -61.86 -1.08 -21.29 16 13 N -1.05 -21.07 4.10 -124.99 -0.51 -21.58 16 14 C 0.13 2.92 8.27 -8.36 -0.07 2.85 16 15 C 0.03 0.75 3.79 -91.12 -0.35 0.41 16 16 C -0.52 -13.19 8.83 -34.44 -0.30 -13.49 16 17 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -24.20 13.26 55.43 0.74 -23.47 16 20 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.13 2.52 8.25 -8.49 -0.07 2.45 16 25 O -0.36 -5.32 8.92 -41.87 -0.37 -5.69 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.61 4.98 -51.93 -0.26 0.35 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.53 6.62 -51.93 -0.34 0.19 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.14 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.14 1.93 8.14 -51.92 -0.42 1.51 16 40 H 0.07 1.61 8.10 -51.93 -0.42 1.18 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.63 8.11 -51.93 -0.42 1.21 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -31.54 367.54 -10.66 -42.20 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.66 Total: 1.00 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.63 Total: -19.30 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.22 Total: -45.05 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -2.49 Total: -47.72 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 48.76 SS G_CDS: -0.62 Total: 48.14 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.54 -10.66 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885293975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.220 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds